Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001052

Physical Location & Seq

Genomic Coordinates Reverse (-)

20304341 .. 20309033

Gene Structure 4693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028225

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3159 bp

ATGTTTTTAAAACTTGGAACTCTAAAACAAGGTTCTTCTTTCTTTTTTGCCAATCTCTGCAAGCAACTAGATATATATTCTTCCCCAGTATCGGATCAATTTGATCAAAGTCCCATGAGTAACCTCAAGTTAGGGGTGGAGGTCGTGGCTGCACATGACCTCATGCCCAAAGATGGACAGGGCTCAGCTAGTGCCTTTGTGGAGCTCCACTTTGATCATCAGAGATTCCGAACCAGTGTAAAAGAAAGAGATCTCAATCCTGTCTGGAATGAAAGCTTTTACTTCAACGTTACTGATCCAAATGACCTCTCTAACCTAAGTCTCGAAGCCTATGTTTACAACCATAGTAAAGCCAACTCCAAATCATTCTTGGGGAAGGTTTGTCTTACTGGGACATCATTTGTCCCATACTCTGATGCTTGTGTTTTGCACTATCCTTTGGAAAAGAGAGGCCTTTTCTCACGTGTGAAGGGAGAGCTTGGCCTCAAAGTTTTTGTTACTGATGACCCGTCTATCAGATCCTCAAATCCACTTCCAGCAATGGACTCTTCGATGGATAGAGGTTCACGCCACACACATGGTCAAGCACCCTCACAACAAGTTCCAAATAATGTCCCAAACCCATTCTCTGATGACAGAGCTGATTCGAGACGCACATTTCGTCACCTTCCAAATCCTACCATAGCACAACAGCAGAATATTCCTTCAGCGGCTACCCAGCCATCAGTGAACTATGGGATGCAGGAGATGAGGTCTGAACCACAGGGACCTCAAATTGTTCGCATGTACTCAGGTTCATCATCTCAACCTTCTGATTATATGCTTAAAGAGACGAGTCCTTTCCTTGGAGGGGGGCAAATTGTTGGTGGGCGGGTTATGCGTACCAACAGACCATCCAGCACCTATGACCTTGTTGAAAAGATGCAATACCTCTTTGTACGAGTTGTGAAAGCTCGCGATCTTCCTGCGATGGATGTTACTGGAAGCCTTGATCCATATGTTGAAGTAAGATTAGGGAACTATAGAGGAGTGACAAAGCATTTTGAGAAGCAGAAGAACCCTGAATGGAATGAGGTGTTTGCCTTTGCAAAGGAAAATGAGCAAGCACATGTATTGGAGGTTGTGGTCAAAGACAAGGATCTTATGAAAGATGACTATGTTGGGTTTGTGCGGTTTGATCTCCATGAAGTTCCTACACGAGTTCCACCTGATAGTCCATTGGCTCCAGAATGGTATCGGATAGAAAACAAGAAAGGGGAGAAGAGGAATGGGGAACTGATGCTTGCTGTATGGTATGGCACACAAGCTGATGAGGCTTTTCCAGATGCGTGGCATTCTGATGCAATTGGTCCTGATGATACTTCTTCGGCTACTTTTGCACATTCGCGCTCAAAAGTTTACCATTCACCACGATTATGGTATGTACGAGTAAATGTAATTGAGGCACAGGACTTGATTATATCTGACAGGTCTCGGTTCCCAGATGCATATGCAAAAGTACAAATTGGTAATCAGATCCTAAAGACAAAAACAGTTCAAACTCGAATTCTGAACCCAATGTGGAATGAGGACCTGATGTTTGTTGCTGCTGAACCCTTTGATGACCATCTGATCATTTCAGTTGAAGATCGTGTTGGTCCAAACAAAGATGAGACCTTAGGAAGGGTTGTCATACCATTGAACACTGTTGAGAGGCGTGCTGATGATCGAAATATTCGTGGGCGGTGGTATAACCTTGAAAAGCACTTGTCAGATGCCATGGAGCTGGAGGGAGAGCAGCGGAAGAAAGATAAAGAAAGAGATAAGTTTTCCAGCAGAATCCATCTTCGTATTTGTCTTGATGGAGGGTATCACGTGCTTGATGAGTCTACTCACTATAGTAGTGACCTTCGACCTACAGCTAAGCCGCTTTGGAAGCCATCCATTGGTGTCTTGGAGCTCGGAATTCTAAATGCTAATGGTCTACACCCAATGAAAACAAGGGATGGGAAGGGTACATCAGATACATATTGTGTAGCAAAGTATGGGCACAAATGGGTTCGTACTCGAACCATAAATAACAGTCTAAGCCCAAAGTACAATGAGCAGTACACTTGGGAGGTATTTGATCCTGCAACCGTTCTCACAGTGGGGGTTTTCGATAACTCTCAAATTTTTGGTAATTCAAATGGCAACAGAGATGTGAAAATTGGCAAGGTCAGGATTCGTATATCTACCCTTGAGACTGGTCGCGTCTACACACACTCTTACCCATTACTAGTCCTTCATCCTTCAGGTGTCAAGAAGATGGGTGAATTGCATCTTGCAATAAGATTTTCATGCACATCACTTGTTAACATGATGTTCAAATACTCCAGACCTCTTTTGCCGAAGATGCATTATGTAAGGCCGTTGACTGTGATGCAGCAAGACATGCTACGTCACCAAGCTGTCAACATAGTTGCAGCCCGGCTTGGTCGCGCGGAACCACCTCTTAGGAAGGAAGTGGTGGAATACATGTCTGATGCAGATTCTCATCTTTGGAGCATGAGGCGTAGCAAGGCAAACTTTTTCAGACTGATGACTGTGTTTTCAGGATTGTTTGCTGTTGGAAAATGGTTTGGAGAAGTATGCATGTGGAAAAACCCCATCACAACAGCACTTGTACATGTTCTCTTTGTGATGCTTGTGTGCTTTCCTGAACTGATTTTGCCAACTGTTTTCCTGTACATGTTTCTGATTGGGATTTGGAATTTCCGATATCGCCCAAGGTACCCTCCTCACATGAACACAAGGATCTCATATGCAGATGCTGTGCACCCAGATGAGCTTGATGAAGAATTCGACACATTTCCAACATCTAAGGGTTCAGATATAGTTCGGATGAGGTATGATCGCTTAAGGAGTGTTGCTGGAAGGATTCAAACCGTGGTGGGTGATGTTGCAACTCAAGGGGAGCGAATTCAGGCGCTTCTCAGCTGGCGGGATCCTCGTGCCACTATGTTATTTATCACATTCTGTCTTGTGGCTGCTATTGTGTTATATGTAACACCTTTCCAGGTTTTGGTTCTTCTTGGTGGGGTTTACTTCATGAGGCATCCCAGGTTCAGGCATAAGATGCCATCAGCCCCAGTTAACTTTTTCCGAAGGCTGCCAGCGAGGACAGATAGTATGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005789 GO:0007154 GO:0007165 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030100 GO:0030133 GO:0030334 GO:0030336 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0035556 GO:0040012 GO:0040013 GO:0042175 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044464 GO:0045202 GO:0045806 GO:0046872 GO:0046928 GO:0048167 GO:0048168 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0051046 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051270 GO:0051271 GO:0051588 GO:0051716 GO:0055037 GO:0060341 GO:0060627 GO:0065007 GO:0065008 GO:0070382 GO:0080134 GO:0097458 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098827 GO:0099177 GO:0099501 GO:0099503 GO:1902882 GO:1902883 GO:1903530 GO:2000145 GO:2000146

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

1053

Amino Acids

120.16

Weight (kDa)

9.09

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	43 - 131	1.5e-19	C2 domain
C2	PF00168	310 - 411	5.4e-21	C2 domain
C2	PF00168	474 - 579	9.1e-22	C2 domain
C2	PF00168	643 - 752	4.2e-21	C2 domain
PRT_C	PF08372	897 - 1052	5.1e-82	Plant phosphoribosyltransferase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11610 AT4G11610 AT4G11610
fragaria_vesca	FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_7g13890 FvH4_7g13890 FvH4_7g13890 FvH4_7g13890 FvH4_7g13890
malus_domestica	MD01G1055400.v1.1 MD06G1081100.v1.1 MD07G1139900.v1.1 MD17G1025600.v1.1
prunus_persica	Prupe.2G165500_v2.0.a1 Prupe.2G165500_v2.0.a1 Prupe.5G098200_v2.0.a1 Prupe.5G098200_v2.0.a1
pyrus_communis	pycom01g08090 pycom06g07810 pycom07g13790 pycom14g09900 pycom17g16030
rosa_chinensis	RchiOBHm_Chr1g0354121 RchiOBHm_Chr1g0354261 RchiOBHm_Chr7g0198021
rosa_laevigata	RLG00000003892 RLG00000028225
rosa_multiflora	Rmu_co8337093.1_g000001 Rmu_co8489259.1_g000001 Rmu_co8505511.1_g000001 Rmu_sc0000221.1_g000032 Rmu_sc0001926.1_g000016 Rmu_sc0006991.1_g000004
rosa_roxburghii	Rroxscaffold_3G00258010 Rroxscaffold_4G00301210
rosa_rugosa	Rorug01G0241600 Rorug01G0241700 Rorug07G0045400 Rorug07G0045500
rosa_samantha	Rh1AG252300 Rh1BG224200 Rh1CG236900 Rh1DG251200 Rh7AG168800 Rh7BG171900 Rh7CG178400 Rh7DG171200
rosa_wichuraiana	Rw1G022010 Rw1G022130 Rw7G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	2751
AccB1I	GGYRCC	1 cut(s)	2751
AccB7I	CCANNNNNTGG	2 cut(s)	1925, 3043
AccI	GTMKAC	3 cut(s)	1868, 1963, 2235
AccII	CGCG	5 cut(s)	957, 1387, 2232, 2460, 2462
AciI	CCGC	8 cut(s)	710, 871, 1171, 1723, 1780, 1907, 2462, 2962
AclI	AACGTT	1 cut(s)	288
AcsI	RAATTY	6 cut(s)	1545, 1944, 2151, 2731, 2819, 2940
AcuI	CTGAAG	2 cut(s)	690, 2256
AcvI	CACGTG	2 cut(s)	464, 1855
AfiI	CCNNNNNNNGG	8 cut(s)	91, 173, 845, 850, 1662, 1925, 3043, 3087
AflII	CTTAAG	1 cut(s)	2878
AflIII	ACRYGT	5 cut(s)	463, 1108, 2496, 2647, 2709
AhlI	ACTAGT	1 cut(s)	2257
AjnI	CCWGG	2 cut(s)	3036, 3080
AjuI	GAANNNNNNNTTGG	2 cut(s)	1617, 1649
Alw21I	GWGCWC	3 cut(s)	207, 1941, 2799
Alw26I	GTCTC	6 cut(s)	326, 643, 824, 1476, 1646, 2216
Alw44I	GTGCAC	1 cut(s)	2795
AlwNI	CAGNNNCTG	1 cut(s)	2792
AoxI	GGCC	3 cut(s)	451, 481, 2387
ApaLI	GTGCAC	1 cut(s)	2795
ApeKI	GCWGC	7 cut(s)	149, 1586, 1777, 2404, 2444, 3008, 3130
ApoI	RAATTY	6 cut(s)	1545, 1944, 2151, 2731, 2819, 2940
ArsI	GACNNNNNNTTYG	4 cut(s)	642, 674, 1562, 1594
Asp718I	GGTACC	1 cut(s)	2751
AspLEI	GCGC	3 cut(s)	1389, 2462, 2950
AspS9I	GGNCC	4 cut(s)	767, 1349, 1570, 1637
AsuC2I	CCSGG	1 cut(s)	2449
AsuHPI	GGTGA	5 cut(s)	656, 1398, 2303, 2414, 2927
AvaII	GGWCC	4 cut(s)	767, 1349, 1570, 1637
AxyI	CCTNAGG	1 cut(s)	1657
BaeGI	GKGCMC	2 cut(s)	2031, 2799
BamHI	GGATCC	1 cut(s)	2965
BanI	GGYRCC	1 cut(s)	2751
BanII	GRGCYC	3 cut(s)	185, 207, 1941
BauI	CACGAG	2 cut(s)	1197, 2970
BbrPI	CACGTG	2 cut(s)	464, 1855
Bbv12I	GWGCWC	3 cut(s)	207, 1941, 2799
BbvI	GCAGC	7 cut(s)	136, 1573, 1789, 2416, 2456, 2995, 3117
BceAI	ACGGC	1 cut(s)	2374
BcgI	CGANNNNNNTGC	2 cut(s)	947, 981
BciT130I	CCWGG	2 cut(s)	3038, 3082
BclI	TGATCA	3 cut(s)	103, 214, 1611
BcnI	CCSGG	1 cut(s)	2449
BcoDI	GTCTC	6 cut(s)	326, 643, 824, 1476, 1646, 2216
BcuI	ACTAGT	1 cut(s)	2257
BfaI	CTAG	3 cut(s)	68, 189, 2258
BfmI	CTRYAG	3 cut(s)	1021, 1876, 1896
BfoI	RGCGCY	1 cut(s)	2951
BfrI	CTTAAG	1 cut(s)	2878
BglII	AGATCT	1 cut(s)	250
BisI	GCNGC	9 cut(s)	150, 711, 1587, 1778, 1907, 2405, 2445, 3009, 3131
BlpI	GCTNAGC	2 cut(s)	184, 1902
BlsI	GCNGC	9 cut(s)	151, 712, 1588, 1779, 1908, 2406, 2446, 3010, 3132
Bme1390I	CCNGG	3 cut(s)	2449, 3038, 3082
Bme18I	GGWCC	4 cut(s)	767, 1349, 1570, 1637
BmgT120I	GGNCC	4 cut(s)	767, 1349, 1570, 1637
BmiI	GGNNCC	6 cut(s)	768, 1224, 1478, 2466, 2753, 2967
BmrFI	CCNGG	3 cut(s)	2449, 3038, 3082
BmrI	ACTGGG	3 cut(s)	80, 399, 3104
BmuI	ACTGGG	3 cut(s)	80, 399, 3104
BpmI	CTGGAG	3 cut(s)	1209, 1787, 2338
Bpu1102I	GCTNAGC	2 cut(s)	184, 1902
BpuEI	CTTGAG	3 cut(s)	110, 2240, 2913
BpuMI	CCSGG	1 cut(s)	2449
BsaAI	YACGTR	2 cut(s)	464, 1855
BsaBI	GATNNNNATC	3 cut(s)	255, 1605, 2514
BsaI	GGTCTC	2 cut(s)	1476, 1646
BsaJI	CCNNGG	5 cut(s)	844, 1758, 2747, 2907, 3080
BsaXI	ACNNNNNCTCC	2 cut(s)	737, 767
Bsc4I	CCNNNNNNNGG	8 cut(s)	91, 173, 845, 850, 1662, 1925, 3043, 3087
Bse1I	ACTGG	6 cut(s)	86, 234, 394, 985, 2230, 3110
Bse21I	CCTNAGG	1 cut(s)	1657
Bse3DI	GCAATG	1 cut(s)	546
Bse8I	GATNNNNATC	3 cut(s)	255, 1605, 2514
BseBI	CCWGG	2 cut(s)	3038, 3082
BseDI	CCNNGG	5 cut(s)	844, 1758, 2747, 2907, 3080
BseGI	GGATG	8 cut(s)	744, 893, 979, 1919, 1990, 2266, 2868, 3076
BseJI	GATNNNNATC	3 cut(s)	255, 1605, 2514
BseLI	CCNNNNNNNGG	8 cut(s)	91, 173, 845, 850, 1662, 1925, 3043, 3087
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	3 cut(s)	198, 804, 2968
BseNI	ACTGG	6 cut(s)	86, 234, 394, 985, 2230, 3110
BseRI	GAGGAG	2 cut(s)	1041, 2748
BseSI	GKGCMC	2 cut(s)	2031, 2799
BseXI	GCAGC	7 cut(s)	136, 1573, 1789, 2416, 2456, 2995, 3117
BseYI	CCCAGC	1 cut(s)	717
BsgI	GTGCAG	1 cut(s)	135
Bsh1236I	CGCG	5 cut(s)	957, 1387, 2232, 2460, 2462
BshFI	GGCC	3 cut(s)	453, 483, 2389
BshNI	GGYRCC	1 cut(s)	2751
BsiHKAI	GWGCWC	3 cut(s)	207, 1941, 2799
BsiSI	CCGG	1 cut(s)	2449
BslFI	GGGAC	5 cut(s)	96, 389, 406, 599, 780
BslI	CCNNNNNNNGG	8 cut(s)	91, 173, 845, 850, 1662, 1925, 3043, 3087
BsmAI	GTCTC	6 cut(s)	326, 643, 824, 1476, 1646, 2216
BsmBI	CGTCTC	2 cut(s)	643, 824
BsmFI	GGGAC	5 cut(s)	96, 389, 406, 599, 780
BsmI	GAATGC	1 cut(s)	1333
BsnI	GGCC	3 cut(s)	453, 483, 2389
Bso31I	GGTCTC	2 cut(s)	1476, 1646
Bsp1286I	GDGCHC	5 cut(s)	185, 207, 1941, 2031, 2799
Bsp1407I	TGTACA	2 cut(s)	2644, 2706
Bsp1720I	GCTNAGC	2 cut(s)	184, 1902
Bsp19I	CCATGG	1 cut(s)	1758
Bsp68I	TCGCGA	1 cut(s)	957
BspACI	CCGC	8 cut(s)	710, 871, 1171, 1723, 1780, 1907, 2462, 2962
BspANI	GGCC	3 cut(s)	453, 483, 2389
BspCNI	CTCAG	3 cut(s)	197, 803, 2967
BspFNI	CGCG	5 cut(s)	957, 1387, 2232, 2460, 2462
BspHI	TCATGA	1 cut(s)	3069
BspLI	GGNNCC	6 cut(s)	768, 1224, 1478, 2466, 2753, 2967
BspT107I	GGYRCC	1 cut(s)	2751
BspTI	CTTAAG	1 cut(s)	2878
BspTNI	GGTCTC	2 cut(s)	1476, 1646
BsrDI	GCAATG	1 cut(s)	546
BsrGI	TGTACA	2 cut(s)	2644, 2706
BsrI	ACTGG	6 cut(s)	86, 234, 394, 985, 2230, 3110
BssECI	CCNNGG	5 cut(s)	844, 1758, 2747, 2907, 3080
BssSI	CACGAG	2 cut(s)	1197, 2970
BssT1I	CCWWGG	3 cut(s)	844, 1758, 2747
Bst2BI	CACGAG	2 cut(s)	1197, 2970
Bst2UI	CCWGG	2 cut(s)	3038, 3082
Bst4CI	ACNGT	9 cut(s)	1534, 1687, 2063, 2119, 2128, 2398, 2566, 2698, 2908
Bst6I	CTCTTC	2 cut(s)	553, 1256
BstAFI	CTTAAG	1 cut(s)	2878
BstAPI	GCANNNNNTGC	2 cut(s)	2413, 3097
BstAUI	TGTACA	2 cut(s)	2644, 2706
BstBAI	YACGTR	2 cut(s)	464, 1855
BstC8I	GCNNGC	7 cut(s)	62, 955, 1104, 1284, 1698, 2960, 3135
BstDEI	CTNAG	9 cut(s)	184, 317, 790, 1657, 1902, 2066, 2474, 2841, 2954
BstDSI	CCRYGG	2 cut(s)	1758, 2907
BstENI	CCTNNNNNAGG	1 cut(s)	1660
BstF5I	GGATG	8 cut(s)	744, 893, 979, 1919, 1990, 2266, 2868, 3076
BstFNI	CGCG	5 cut(s)	957, 1387, 2232, 2460, 2462
BstH2I	RGCGCY	1 cut(s)	2951
BstHHI	GCGC	3 cut(s)	1389, 2462, 2950
BstMAI	GTCTC	6 cut(s)	326, 643, 824, 1476, 1646, 2216
BstMWI	GCNNNNNNNGC	7 cut(s)	877, 1313, 1376, 1915, 2374, 2413, 3097
BstNI	CCWGG	2 cut(s)	3038, 3082
BstNSI	RCATGY	7 cut(s)	787, 1112, 2416, 2500, 2617, 2651, 2713
BstSCI	CCNGG	3 cut(s)	2447, 3036, 3080
BstSFI	CTRYAG	3 cut(s)	1021, 1876, 1896
BstSLI	GKGCMC	2 cut(s)	2031, 2799
BstUI	CGCG	5 cut(s)	957, 1387, 2232, 2460, 2462
BstV1I	GCAGC	7 cut(s)	136, 1573, 1789, 2416, 2456, 2995, 3117
BstX2I	RGATCY	6 cut(s)	250, 518, 1138, 1515, 2775, 2965
BstXI	CCANNNNNNTGG	4 cut(s)	578, 1329, 1416, 1765
BstYI	RGATCY	6 cut(s)	250, 518, 1138, 1515, 2775, 2965
Bsu36I	CCTNAGG	1 cut(s)	1657
BsuRI	GGCC	3 cut(s)	453, 483, 2389
BtgI	CCRYGG	2 cut(s)	1758, 2907
BtgZI	GCGATG	1 cut(s)	983
BtsCI	GGATG	8 cut(s)	744, 893, 979, 1919, 1990, 2266, 2868, 3076
BtsIMutI	CAGTG	4 cut(s)	241, 732, 1683, 2133
BtuMI	TCGCGA	1 cut(s)	957
Cac8I	GCNNGC	7 cut(s)	62, 955, 1104, 1284, 1698, 2960, 3135
CaiI	CAGNNNCTG	1 cut(s)	2792
CciI	TCATGA	1 cut(s)	3069
CfoI	GCGC	3 cut(s)	1389, 2462, 2950
Cfr13I	GGNCC	4 cut(s)	767, 1349, 1570, 1637
CseI	GACGC	2 cut(s)	660, 2221
DdeI	CTNAG	9 cut(s)	184, 317, 790, 1657, 1902, 2066, 2474, 2841, 2954
DraI	TTTAAA	1 cut(s)	9
Eam1104I	CTCTTC	2 cut(s)	553, 1256
EarI	CTCTTC	2 cut(s)	553, 1256
Ecl136II	GAGCTC	2 cut(s)	205, 1939
Eco130I	CCWWGG	3 cut(s)	844, 1758, 2747
Eco147I	AGGCCT	1 cut(s)	453
Eco24I	GRGCYC	3 cut(s)	185, 207, 1941
Eco31I	GGTCTC	2 cut(s)	1476, 1646
Eco32I	GATATC	1 cut(s)	2741
Eco47I	GGWCC	4 cut(s)	767, 1349, 1570, 1637
Eco53kI	GAGCTC	2 cut(s)	205, 1939
Eco57I	CTGAAG	2 cut(s)	690, 2256
Eco72I	CACGTG	2 cut(s)	464, 1855
Eco81I	CCTNAGG	1 cut(s)	1657
EcoICRI	GAGCTC	2 cut(s)	205, 1939
EcoNI	CCTNNNNNAGG	1 cut(s)	1660
EcoO109I	RGGNCCY	2 cut(s)	767, 1570
EcoRI	GAATTC	4 cut(s)	1545, 1944, 2819, 2940
EcoRII	CCWGG	2 cut(s)	3036, 3080
EcoRV	GATATC	1 cut(s)	2741
EcoT14I	CCWWGG	3 cut(s)	844, 1758, 2747
EcoT22I	ATGCAT	3 cut(s)	1489, 2379, 2615
EcoT38I	GRGCYC	3 cut(s)	185, 207, 1941
ErhI	CCWWGG	3 cut(s)	844, 1758, 2747
Esp3I	CGTCTC	2 cut(s)	643, 824
FalI	AAGNNNNNCTT	2 cut(s)	2531, 2563
FaqI	GGGAC	5 cut(s)	96, 389, 406, 599, 780
FauI	CCCGC	2 cut(s)	864, 2955
FauNDI	CATATG	3 cut(s)	997, 1489, 2782
FbaI	TGATCA	3 cut(s)	103, 214, 1611
FblI	GTMKAC	3 cut(s)	1868, 1963, 2235
Fnu4HI	GCNGC	9 cut(s)	150, 711, 1587, 1778, 1907, 2405, 2445, 3009, 3131
FokI	GGATG	8 cut(s)	751, 880, 986, 1906, 1997, 2253, 2875, 3063
FriOI	GRGCYC	3 cut(s)	185, 207, 1941
Fsp4HI	GCNGC	9 cut(s)	150, 711, 1587, 1778, 1907, 2405, 2445, 3009, 3131
FspBI	CTAG	3 cut(s)	68, 189, 2258
GlaI	GCGC	3 cut(s)	1388, 2461, 2949
GluI	GCNGC	9 cut(s)	150, 711, 1587, 1778, 1907, 2405, 2445, 3009, 3131
GsaI	CCCAGC	1 cut(s)	721
GsuI	CTGGAG	3 cut(s)	1209, 1787, 2338
HaeII	RGCGCY	1 cut(s)	2951
HaeIII	GGCC	3 cut(s)	453, 483, 2389
HapII	CCGG	1 cut(s)	2449
HgaI	GACGC	2 cut(s)	660, 2221
HhaI	GCGC	3 cut(s)	1389, 2462, 2950
Hin6I	GCGC	3 cut(s)	1387, 2460, 2948
HinP1I	GCGC	3 cut(s)	1387, 2460, 2948
HincII	GTYRAC	4 cut(s)	2335, 2394, 2434, 3115
HindII	GTYRAC	4 cut(s)	2335, 2394, 2434, 3115
HindIII	AAGCTT	1 cut(s)	274
HinfI	GANTC	9 cut(s)	225, 545, 644, 835, 1818, 1865, 2203, 2510, 2899
HpaI	GTTAAC	2 cut(s)	2335, 3115
HpaII	CCGG	1 cut(s)	2449
HphI	GGTGA	5 cut(s)	656, 1398, 2303, 2414, 2927
HpyCH4III	ACNGT	9 cut(s)	1534, 1687, 2063, 2119, 2128, 2398, 2566, 2698, 2908
HpyCH4IV	ACGT	4 cut(s)	288, 463, 1854, 2419
HpyF10VI	GCNNNNNNNGC	7 cut(s)	877, 1313, 1376, 1915, 2374, 2413, 3097
HpyF3I	CTNAG	9 cut(s)	184, 317, 790, 1657, 1902, 2066, 2474, 2841, 2954
HpySE526I	ACGT	4 cut(s)	288, 463, 1854, 2419
HspAI	GCGC	3 cut(s)	1387, 2460, 2948
KpnI	GGTACC	1 cut(s)	2755
Ksp22I	TGATCA	3 cut(s)	103, 214, 1611
KspAI	GTTAAC	2 cut(s)	2335, 3115
LmnI	GCTCC	7 cut(s)	202, 210, 1228, 1762, 1936, 2523, 2935
Lsp1109I	GCAGC	7 cut(s)	136, 1573, 1789, 2416, 2456, 2995, 3117
MaeI	CTAG	3 cut(s)	68, 189, 2258
MaeII	ACGT	4 cut(s)	288, 463, 1854, 2419
MaeIII	GTNAC	9 cut(s)	119, 289, 496, 662, 976, 1030, 1883, 2420, 3025
MfeI	CAATTG	1 cut(s)	1344
MflI	RGATCY	6 cut(s)	250, 518, 1138, 1515, 2775, 2965
MhlI	GDGCHC	5 cut(s)	185, 207, 1941, 2031, 2799
MlyI	GAGTC	3 cut(s)	539, 844, 1874
MmeI	TCCRAC	2 cut(s)	2569, 2858
Mph1103I	ATGCAT	3 cut(s)	1489, 2379, 2615
MseI	TTAA	5 cut(s)	8, 825, 2334, 2879, 3114
MslI	CAYNNNNRTG	4 cut(s)	576, 1338, 1414, 2802
MspA1I	CMGCKG	3 cut(s)	710, 1780, 2958
MspCI	CTTAAG	1 cut(s)	2878
MspI	CCGG	1 cut(s)	2449
MspR9I	CCNGG	3 cut(s)	2449, 3038, 3082
MunI	CAATTG	1 cut(s)	1344
Mva1269I	GAATGC	1 cut(s)	1333
MvaI	CCWGG	2 cut(s)	3038, 3082
MvnI	CGCG	5 cut(s)	957, 1387, 2232, 2460, 2462
MwoI	GCNNNNNNNGC	7 cut(s)	877, 1313, 1376, 1915, 2374, 2413, 3097
NciI	CCSGG	1 cut(s)	2449
NcoI	CCATGG	1 cut(s)	1758
NdeI	CATATG	3 cut(s)	997, 1489, 2782
NlaIV	GGNNCC	6 cut(s)	768, 1224, 1478, 2466, 2753, 2967
NmuCI	GTSAC	4 cut(s)	662, 1030, 1883, 2420
NruI	TCGCGA	1 cut(s)	957
NsiI	ATGCAT	3 cut(s)	1489, 2379, 2615
NspI	RCATGY	7 cut(s)	787, 1112, 2416, 2500, 2617, 2651, 2713
PagI	TCATGA	1 cut(s)	3069
PceI	AGGCCT	1 cut(s)	453
PciI	ACATGT	4 cut(s)	1108, 2496, 2647, 2709
PcsI	WCGNNNNNNNCGW	2 cut(s)	658, 1714
PctI	GAATGC	1 cut(s)	1333
PfeI	GAWTC	6 cut(s)	225, 644, 1818, 2203, 2510, 2899
PflMI	CCANNNNNTGG	2 cut(s)	1925, 3043
PkrI	GCNGC	9 cut(s)	151, 712, 1588, 1779, 1908, 2406, 2446, 3010, 3132
PleI	GAGTC	3 cut(s)	539, 843, 1873
PmaCI	CACGTG	2 cut(s)	464, 1855
PmlI	CACGTG	2 cut(s)	464, 1855
PpsI	GAGTC	3 cut(s)	539, 843, 1873
Ppu21I	YACGTR	2 cut(s)	464, 1855
PpuMI	RGGWCCY	2 cut(s)	767, 1570
PscI	ACATGT	4 cut(s)	1108, 2496, 2647, 2709
Psp124BI	GAGCTC	2 cut(s)	207, 1941
Psp1406I	AACGTT	1 cut(s)	288
Psp5II	RGGWCCY	2 cut(s)	767, 1570
Psp6I	CCWGG	2 cut(s)	3036, 3080
PspCI	CACGTG	2 cut(s)	464, 1855
PspFI	CCCAGC	1 cut(s)	717
PspGI	CCWGG	2 cut(s)	3036, 3080
PspN4I	GGNNCC	6 cut(s)	768, 1224, 1478, 2466, 2753, 2967
PspPI	GGNCC	4 cut(s)	767, 1349, 1570, 1637
PspPPI	RGGWCCY	2 cut(s)	767, 1570
PstNI	CAGNNNCTG	1 cut(s)	2792
PsuI	RGATCY	6 cut(s)	250, 518, 1138, 1515, 2775, 2965
PvuII	CAGCTG	1 cut(s)	2958
RruI	TCGCGA	1 cut(s)	957
RseI	CAYNNNNRTG	4 cut(s)	576, 1338, 1414, 2802
SacI	GAGCTC	2 cut(s)	207, 1941
SaqAI	TTAA	5 cut(s)	8, 825, 2334, 2879, 3114
SatI	GCNGC	9 cut(s)	150, 711, 1587, 1778, 1907, 2405, 2445, 3009, 3131
Sau96I	GGNCC	4 cut(s)	767, 1349, 1570, 1637
SchI	GAGTC	3 cut(s)	539, 844, 1874
ScrFI	CCNGG	3 cut(s)	2449, 3038, 3082
SduI	GDGCHC	5 cut(s)	185, 207, 1941, 2031, 2799
SfcI	CTRYAG	3 cut(s)	1021, 1876, 1896
SinI	GGWCC	4 cut(s)	767, 1349, 1570, 1637
SmiMI	CAYNNNNRTG	4 cut(s)	576, 1338, 1414, 2802
SmlI	CTYRAG	4 cut(s)	125, 2219, 2878, 2928
SmoI	CTYRAG	4 cut(s)	125, 2219, 2878, 2928
SpeI	ACTAGT	1 cut(s)	2257
SseBI	AGGCCT	1 cut(s)	453
SsiI	CCGC	8 cut(s)	710, 871, 1171, 1723, 1780, 1907, 2462, 2962
SspI	AATATT	2 cut(s)	700, 1714
SspMI	CTAG	3 cut(s)	68, 189, 2258
SstI	GAGCTC	2 cut(s)	207, 1941
StuI	AGGCCT	1 cut(s)	453
StyD4I	CCNGG	3 cut(s)	2447, 3036, 3080
StyI	CCWWGG	3 cut(s)	844, 1758, 2747
TaaI	ACNGT	9 cut(s)	1534, 1687, 2063, 2119, 2128, 2398, 2566, 2698, 2908
TaiI	ACGT	4 cut(s)	291, 466, 1857, 2422
TaqI	TCGA	9 cut(s)	324, 551, 647, 1543, 1708, 1891, 2047, 2139, 2823
TatI	WGTACW	6 cut(s)	786, 1498, 2076, 2088, 2644, 2706
TauI	GCSGC	2 cut(s)	713, 1909
TfiI	GAWTC	6 cut(s)	225, 644, 1818, 2203, 2510, 2899
Tru1I	TTAA	5 cut(s)	8, 825, 2334, 2879, 3114
Tru9I	TTAA	5 cut(s)	8, 825, 2334, 2879, 3114
TscAI	CASTG	4 cut(s)	241, 732, 1690, 2133
TseFI	GTSAC	4 cut(s)	662, 1030, 1883, 2420
TseI	GCWGC	7 cut(s)	149, 1586, 1777, 2404, 2444, 3008, 3130
Tsp45I	GTSAC	4 cut(s)	662, 1030, 1883, 2420
TspRI	CASTG	4 cut(s)	241, 732, 1690, 2133
Van91I	CCANNNNNTGG	2 cut(s)	1925, 3043
Vha464I	CTTAAG	1 cut(s)	2878
VneI	GTGCAC	1 cut(s)	2795
VpaK11BI	GGWCC	4 cut(s)	767, 1349, 1570, 1637
XagI	CCTNNNNNAGG	1 cut(s)	1660
XapI	RAATTY	6 cut(s)	1545, 1944, 2151, 2731, 2819, 2940
XceI	RCATGY	7 cut(s)	787, 1112, 2416, 2500, 2617, 2651, 2713
XcmI	CCANNNNNNNNNTGG	2 cut(s)	367, 1930
XmiI	GTMKAC	3 cut(s)	1868, 1963, 2235
XspI	CTAG	3 cut(s)	68, 189, 2258
Zsp2I	ATGCAT	3 cut(s)	1489, 2379, 2615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.