Rorug07G0045400

Multiple C2 and transmembrane domain-containing protein 1

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
3325917 .. 3327987
2071 bp
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UTR
Exon/CDS
Intron
Rorug07G0045400.1

Sequence Viewer

Length: 225 bp
ATGAACCACAATGGGGTTGCTGGGTTTAATTGGCGTTTGGTTATGAAGTTGGAAGGTTACCAAAAACATAGACAGTTCACCAGAAGAAGCAAGTTGGAAAGCCTAGCTGATATCATTTTGTATTCCTTTAAACCCAAGTATACTGATGAATGGGAAATGCCACATCGATCGTGTATGATATATGCAGAACTCCCTAACCAGTGTAGGCAGAATTCCAATCCATGA

Protein Analysis

74

Amino Acids

8.91

Weight (kDa)

9.34

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 140
AcsI RAATTY 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 13
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
ApoI RAATTY 1 cut(s) 211
AsuHPI GGTGA 1 cut(s) 70
BfaI CTAG 1 cut(s) 104
Bsa29I ATCGAT 1 cut(s) 166
Bsc4I CCNNNNNNNGG 1 cut(s) 13
Bse1I ACTGG 1 cut(s) 199
BseCI ATCGAT 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 13
BseNI ACTGG 1 cut(s) 199
BseYI CCCAGC 1 cut(s) 20
Bsh1285I CGRYCG 1 cut(s) 170
BshVI ATCGAT 1 cut(s) 166
BsiEI CGRYCG 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 13
Bsp143I GATC 1 cut(s) 167
BspDI ATCGAT 1 cut(s) 166
BsrI ACTGG 1 cut(s) 199
BssMI GATC 1 cut(s) 167
BssNAI GTATAC 1 cut(s) 141
Bst1107I GTATAC 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 75
BstEII GGTNACC 1 cut(s) 56
BstKTI GATC 1 cut(s) 170
BstMBI GATC 1 cut(s) 167
BstMCI CGRYCG 1 cut(s) 170
BstPI GGTNACC 1 cut(s) 56
BstZ17I GTATAC 1 cut(s) 141
Bsu15I ATCGAT 1 cut(s) 166
BsuTUI ATCGAT 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 206
ClaI ATCGAT 1 cut(s) 166
CviAII CATG 1 cut(s) 222
CviJI RGCY 2 cut(s) 102, 107
CviKI_1 RGCY 2 cut(s) 102, 107
DpnI GATC 1 cut(s) 169
DpnII GATC 1 cut(s) 167
DraI TTTAAA 1 cut(s) 130
Eco32I GATATC 1 cut(s) 112
Eco91I GGTNACC 1 cut(s) 56
EcoO65I GGTNACC 1 cut(s) 56
EcoRI GAATTC 1 cut(s) 211
EcoRV GATATC 1 cut(s) 112
FaeI CATG 1 cut(s) 225
FaiI YATR 7 cut(s) 44, 69, 141, 176, 181, 183, 223
FatI CATG 1 cut(s) 221
FblI GTMKAC 1 cut(s) 140
FspBI CTAG 1 cut(s) 104
GsaI CCCAGC 1 cut(s) 24
Hin1II CATG 1 cut(s) 225
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 2 cut(s) 78, 141
Hpy8I GTNNAC 2 cut(s) 78, 141
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 185
Hsp92II CATG 1 cut(s) 225
Kzo9I GATC 1 cut(s) 167
LpnPI CCDG 3 cut(s) 6, 94, 212
MaeI CTAG 1 cut(s) 104
MaeIII GTNAC 1 cut(s) 56
MalI GATC 1 cut(s) 169
MboI GATC 1 cut(s) 167
MboII GAAGA 1 cut(s) 96
MluCI AATT 2 cut(s) 28, 211
MmeI TCCRAC 2 cut(s) 30, 75
MseI TTAA 2 cut(s) 27, 129
NdeII GATC 1 cut(s) 167
NlaIII CATG 1 cut(s) 225
Ple19I CGATCG 1 cut(s) 170
PspEI GGTNACC 1 cut(s) 56
PspFI CCCAGC 1 cut(s) 20
PvuI CGATCG 1 cut(s) 170
SaqAI TTAA 2 cut(s) 27, 129
Sau3AI GATC 1 cut(s) 167
SetI ASST 2 cut(s) 58, 109
SgeI CNNG 7 cut(s) 33, 93, 103, 116, 148, 183, 211
Sse9I AATT 2 cut(s) 28, 211
SspMI CTAG 1 cut(s) 104
TaaI ACNGT 1 cut(s) 75
TaqI TCGA 1 cut(s) 166
TasI AATT 2 cut(s) 28, 211
Tru1I TTAA 2 cut(s) 27, 129
Tru9I TTAA 2 cut(s) 27, 129
TscAI CASTG 1 cut(s) 206
TspDTI ATGAA 3 cut(s) 17, 59, 162
TspRI CASTG 1 cut(s) 206
XapI RAATTY 1 cut(s) 211
XmiI GTMKAC 1 cut(s) 140
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.