Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001052

Physical Location & Seq

Genomic Coordinates Forward (+)

47297196 .. 47298066

Gene Structure 871 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57984

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGGTGAATTGCATCTTGCAATAAGATTTTCATGCACATCACTGGTTAACATGATGTTCAAATACTCTAGACCTCTTTTGCCGAAGATGCATTATGTAAGGCCGTTGACTGTGATGCAGCAAGACATGCTACGTCACCAAGCTGTCAACATAGTTGCAGCCCGGCTTAGTCGGGCGGAACCACCTCTTAGGAAGGAAGTGCAAGGCAACTTTTTCAGACTGATGACTGTATTTTCGGGATTGTTTGCTGTTGGAAAATGGTTTGGAGAAGTATGCATGTGGAAAAACCCCATCACAACAGCACTTGTACATGTTCTCTTTGTGATGCTTGTGTACCCTCCTCACATGAACACAAGGATCTCATATGCAGATGCCGTGCACCCAGATGAGCTTGATGAAGAATTCGACACATTTCCAACATCTAAGGGTTCAGATATAGTTCGGATGAGGTATGATCGCTTAAGGAGTGTTGCTGGAAGGATTCAAACGGTGGTGGGTGATGTTGCAACTCAAGGGGAGCGAATGCAGGCGCTTCTCAGCTGGCGGGATCCTCGTGCCACTATGTTATTTATCACATTCTGTCTTGTGGCTGCTATTGTGTTATACGTAACACCTTTCCAGGTTTTGGTTCTTCTCGGTGGGGTTTACTTCATGAGGCACCCCAGGTTCAGGCATAAGATGCCATCAGCCCCAGTTAACTTTTTCCGAAGGCTGCCAGCGAGGACGGATAGTATGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005789 GO:0007154 GO:0007165 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030100 GO:0030133 GO:0030334 GO:0030336 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0035556 GO:0040012 GO:0040013 GO:0042175 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044464 GO:0045202 GO:0045806 GO:0046872 GO:0046928 GO:0048167 GO:0048168 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0051046 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051270 GO:0051271 GO:0051588 GO:0051716 GO:0055037 GO:0060341 GO:0060627 GO:0065007 GO:0065008 GO:0070382 GO:0080134 GO:0097458 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098827 GO:0099177 GO:0099501 GO:0099503 GO:1902882 GO:1902883 GO:1903530 GO:2000145 GO:2000146

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

246

Amino Acids

28.38

Weight (kDa)

10.11

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRT_C	PF08372	112 - 246	1.8e-72	Plant phosphoribosyltransferase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11610 AT4G11610 AT4G11610
fragaria_vesca	FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_7g13890 FvH4_7g13890 FvH4_7g13890 FvH4_7g13890 FvH4_7g13890
malus_domestica	MD01G1055400.v1.1 MD06G1081100.v1.1 MD07G1139900.v1.1 MD17G1025600.v1.1
prunus_persica	Prupe.2G165500_v2.0.a1 Prupe.2G165500_v2.0.a1 Prupe.5G098200_v2.0.a1 Prupe.5G098200_v2.0.a1
pyrus_communis	pycom01g08090 pycom06g07810 pycom07g13790 pycom14g09900 pycom17g16030
rosa_chinensis	RchiOBHm_Chr1g0354121 RchiOBHm_Chr1g0354261 RchiOBHm_Chr7g0198021
rosa_laevigata	RLG00000003892 RLG00000028225
rosa_multiflora	Rmu_co8337093.1_g000001 Rmu_co8489259.1_g000001 Rmu_co8505511.1_g000001 Rmu_sc0000221.1_g000032 Rmu_sc0001926.1_g000016 Rmu_sc0006991.1_g000004
rosa_roxburghii	Rroxscaffold_3G00258010 Rroxscaffold_4G00301210
rosa_rugosa	Rorug01G0241600 Rorug01G0241700 Rorug07G0045400 Rorug07G0045500
rosa_samantha	Rh1AG252300 Rh1BG224200 Rh1CG236900 Rh1DG251200 Rh7AG168800 Rh7BG171900 Rh7CG178400 Rh7DG171200
rosa_wichuraiana	Rw1G022010 Rw1G022130 Rw7G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	657
AccB7I	CCANNNNNTGG	1 cut(s)	625
AciI	CCGC	2 cut(s)	176, 544
AclWI	GGATC	3 cut(s)	365, 542, 555
AcsI	RAATTY	1 cut(s)	401
AfaI	GTAC	2 cut(s)	309, 335
AfiI	CCNNNNNNNGG	2 cut(s)	625, 669
AflII	CTTAAG	1 cut(s)	460
AflIII	ACRYGT	1 cut(s)	310
AgsI	TTSAA	2 cut(s)	61, 485
AjnI	CCWGG	2 cut(s)	618, 662
AluBI	AGCT	3 cut(s)	143, 391, 540
AluI	AGCT	3 cut(s)	143, 391, 540
Alw21I	GWGCWC	1 cut(s)	381
Alw44I	GTGCAC	1 cut(s)	377
AlwI	GGATC	3 cut(s)	365, 542, 555
AoxI	GGCC	1 cut(s)	101
ApaLI	GTGCAC	1 cut(s)	377
ApeKI	GCWGC	4 cut(s)	118, 158, 590, 712
ApoI	RAATTY	1 cut(s)	401
ArsI	GACNNNNNNTTYG	2 cut(s)	217, 249
AspLEI	GCGC	1 cut(s)	532
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	3 cut(s)	17, 128, 509
BaeGI	GKGCMC	1 cut(s)	381
BamHI	GGATCC	1 cut(s)	547
BanI	GGYRCC	1 cut(s)	657
BauI	CACGAG	1 cut(s)	552
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	4 cut(s)	130, 170, 577, 699
BccI	CCATC	2 cut(s)	299, 691
BceAI	ACGGC	2 cut(s)	88, 359
BciT130I	CCWGG	2 cut(s)	620, 664
BcnI	CCSGG	1 cut(s)	163
BfaI	CTAG	1 cut(s)	69
BfoI	RGCGCY	1 cut(s)	533
BfrI	CTTAAG	1 cut(s)	460
BisI	GCNGC	4 cut(s)	119, 159, 591, 713
BlsI	GCNGC	4 cut(s)	120, 160, 592, 714
Bme1390I	CCNGG	3 cut(s)	163, 620, 664
BmiI	GGNNCC	3 cut(s)	180, 549, 659
BmrFI	CCNGG	3 cut(s)	163, 620, 664
BmrI	ACTGGG	1 cut(s)	686
BmsI	GCATC	6 cut(s)	22, 78, 105, 315, 361, 669
BmuI	ACTGGG	1 cut(s)	686
BpuEI	CTTGAG	1 cut(s)	495
BpuMI	CCSGG	1 cut(s)	163
BsaAI	YACGTR	1 cut(s)	607
BsaJI	CCNNGG	1 cut(s)	662
Bsc4I	CCNNNNNNNGG	2 cut(s)	625, 669
Bse1I	ACTGG	2 cut(s)	48, 692
BseBI	CCWGG	2 cut(s)	620, 664
BseDI	CCNNGG	1 cut(s)	662
BseGI	GGATG	1 cut(s)	450
BseLI	CCNNNNNNNGG	2 cut(s)	625, 669
BseMII	CTCAG	1 cut(s)	550
BseNI	ACTGG	2 cut(s)	48, 692
BseRI	GAGGAG	1 cut(s)	330
BseSI	GKGCMC	1 cut(s)	381
BseXI	GCAGC	4 cut(s)	130, 170, 577, 699
BshFI	GGCC	1 cut(s)	103
BshNI	GGYRCC	1 cut(s)	657
BsiHKAI	GWGCWC	1 cut(s)	381
BsiSI	CCGG	1 cut(s)	163
BslI	CCNNNNNNNGG	2 cut(s)	625, 669
BsmI	GAATGC	1 cut(s)	528
BsnI	GGCC	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp1407I	TGTACA	1 cut(s)	307
Bsp143I	GATC	3 cut(s)	357, 454, 547
BspACI	CCGC	2 cut(s)	176, 544
BspANI	GGCC	1 cut(s)	103
BspCNI	CTCAG	1 cut(s)	549
BspHI	TCATGA	1 cut(s)	651
BspLI	GGNNCC	3 cut(s)	180, 549, 659
BspPI	GGATC	3 cut(s)	365, 542, 555
BspT107I	GGYRCC	1 cut(s)	657
BspTI	CTTAAG	1 cut(s)	460
BsrGI	TGTACA	1 cut(s)	307
BsrI	ACTGG	2 cut(s)	48, 692
BssECI	CCNNGG	1 cut(s)	662
BssMI	GATC	3 cut(s)	357, 454, 547
BssSI	CACGAG	1 cut(s)	552
Bst2BI	CACGAG	1 cut(s)	552
Bst2UI	CCWGG	2 cut(s)	620, 664
Bst4CI	ACNGT	3 cut(s)	112, 229, 490
BstAFI	CTTAAG	1 cut(s)	460
BstAPI	GCANNNNNTGC	2 cut(s)	127, 679
BstAUI	TGTACA	1 cut(s)	307
BstBAI	YACGTR	1 cut(s)	607
BstC8I	GCNNGC	3 cut(s)	528, 542, 717
BstDEI	CTNAG	4 cut(s)	167, 188, 423, 536
BstF5I	GGATG	1 cut(s)	450
BstH2I	RGCGCY	1 cut(s)	533
BstHHI	GCGC	1 cut(s)	532
BstKTI	GATC	3 cut(s)	360, 457, 550
BstMBI	GATC	3 cut(s)	357, 454, 547
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 127, 679
BstNI	CCWGG	2 cut(s)	620, 664
BstNSI	RCATGY	3 cut(s)	130, 280, 314
BstSCI	CCNGG	3 cut(s)	161, 618, 662
BstSLI	GKGCMC	1 cut(s)	381
BstSNI	TACGTA	1 cut(s)	607
BstV1I	GCAGC	4 cut(s)	130, 170, 577, 699
BstX2I	RGATCY	2 cut(s)	357, 547
BstYI	RGATCY	2 cut(s)	357, 547
BsuRI	GGCC	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	450
BtsIMutI	CAGTG	1 cut(s)	41
Cac8I	GCNNGC	3 cut(s)	528, 542, 717
CciI	TCATGA	1 cut(s)	651
CfoI	GCGC	1 cut(s)	532
Csp6I	GTAC	2 cut(s)	308, 334
CviAII	CATG	7 cut(s)	33, 52, 127, 277, 311, 346, 652
CviJI	RGCY	9 cut(s)	103, 143, 161, 166, 391, 540, 590, 689, 712
CviKI_1	RGCY	9 cut(s)	103, 143, 161, 166, 391, 540, 590, 689, 712
CviQI	GTAC	2 cut(s)	308, 334
DdeI	CTNAG	4 cut(s)	167, 188, 423, 536
DpnI	GATC	3 cut(s)	359, 456, 549
DpnII	GATC	3 cut(s)	357, 454, 547
EciI	GGCGGA	1 cut(s)	191
Eco105I	TACGTA	1 cut(s)	607
EcoRI	GAATTC	1 cut(s)	401
EcoRII	CCWGG	2 cut(s)	618, 662
EcoT22I	ATGCAT	2 cut(s)	93, 278
FaeI	CATG	7 cut(s)	36, 55, 130, 280, 314, 349, 655
FatI	CATG	7 cut(s)	32, 51, 126, 276, 310, 345, 651
FauI	CCCGC	1 cut(s)	537
FauNDI	CATATG	1 cut(s)	364
Fnu4HI	GCNGC	4 cut(s)	119, 159, 591, 713
FokI	GGATG	1 cut(s)	457
Fsp4HI	GCNGC	4 cut(s)	119, 159, 591, 713
FspBI	CTAG	1 cut(s)	69
GlaI	GCGC	1 cut(s)	531
GluI	GCNGC	4 cut(s)	119, 159, 591, 713
HaeII	RGCGCY	1 cut(s)	533
HaeIII	GGCC	1 cut(s)	103
HapII	CCGG	1 cut(s)	163
HhaI	GCGC	1 cut(s)	532
Hin1II	CATG	7 cut(s)	36, 55, 130, 280, 314, 349, 655
Hin6I	GCGC	1 cut(s)	530
HinP1I	GCGC	1 cut(s)	530
HincII	GTYRAC	4 cut(s)	49, 108, 148, 697
HindII	GTYRAC	4 cut(s)	49, 108, 148, 697
HinfI	GANTC	1 cut(s)	481
HpaI	GTTAAC	2 cut(s)	49, 697
HpaII	CCGG	1 cut(s)	163
HphI	GGTGA	3 cut(s)	17, 128, 509
Hpy166II	GTNNAC	7 cut(s)	49, 108, 148, 334, 379, 646, 697
Hpy188I	TCNGA	4 cut(s)	218, 433, 444, 707
Hpy188III	TCNNGA	3 cut(s)	69, 237, 652
Hpy8I	GTNNAC	7 cut(s)	49, 108, 148, 334, 379, 646, 697
HpyAV	CCTTC	3 cut(s)	187, 471, 702
HpyCH4III	ACNGT	3 cut(s)	112, 229, 490
HpyCH4IV	ACGT	2 cut(s)	133, 606
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 127, 679
HpyF3I	CTNAG	4 cut(s)	167, 188, 423, 536
HpySE526I	ACGT	2 cut(s)	133, 606
Hsp92II	CATG	7 cut(s)	36, 55, 130, 280, 314, 349, 655
HspAI	GCGC	1 cut(s)	530
KspAI	GTTAAC	2 cut(s)	49, 697
Kzo9I	GATC	3 cut(s)	357, 454, 547
LmnI	GCTCC	1 cut(s)	517
Lsp1109I	GCAGC	4 cut(s)	130, 170, 577, 699
LweI	GCATC	6 cut(s)	22, 78, 105, 315, 361, 669
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	2 cut(s)	133, 606
MaeIII	GTNAC	2 cut(s)	134, 607
MalI	GATC	3 cut(s)	359, 456, 549
MboI	GATC	3 cut(s)	357, 454, 547
MboII	GAAGA	3 cut(s)	97, 410, 623
MflI	RGATCY	2 cut(s)	357, 547
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	2 cut(s)	8, 401
MmeI	TCCRAC	2 cut(s)	232, 440
MnlI	CCTC	8 cut(s)	84, 195, 348, 351, 441, 561, 648, 714
Mph1103I	ATGCAT	2 cut(s)	93, 278
MseI	TTAA	3 cut(s)	48, 461, 696
MslI	CAYNNNNRTG	1 cut(s)	384
MspA1I	CMGCKG	1 cut(s)	540
MspCI	CTTAAG	1 cut(s)	460
MspI	CCGG	1 cut(s)	163
MspR9I	CCNGG	3 cut(s)	163, 620, 664
Mva1269I	GAATGC	1 cut(s)	528
MvaI	CCWGG	2 cut(s)	620, 664
MwoI	GCNNNNNNNGC	3 cut(s)	88, 127, 679
NciI	CCSGG	1 cut(s)	163
NdeI	CATATG	1 cut(s)	364
NdeII	GATC	3 cut(s)	357, 454, 547
NlaIII	CATG	7 cut(s)	36, 55, 130, 280, 314, 349, 655
NlaIV	GGNNCC	3 cut(s)	180, 549, 659
NmuCI	GTSAC	1 cut(s)	134
NsiI	ATGCAT	2 cut(s)	93, 278
NspI	RCATGY	3 cut(s)	130, 280, 314
PagI	TCATGA	1 cut(s)	651
PciI	ACATGT	1 cut(s)	310
PctI	GAATGC	1 cut(s)	528
PfeI	GAWTC	1 cut(s)	481
PflMI	CCANNNNNTGG	1 cut(s)	625
PkrI	GCNGC	4 cut(s)	120, 160, 592, 714
Ppu21I	YACGTR	1 cut(s)	607
PscI	ACATGT	1 cut(s)	310
Psp6I	CCWGG	2 cut(s)	618, 662
PspGI	CCWGG	2 cut(s)	618, 662
PspN4I	GGNNCC	3 cut(s)	180, 549, 659
PsuI	RGATCY	2 cut(s)	357, 547
PvuII	CAGCTG	1 cut(s)	540
RsaI	GTAC	2 cut(s)	309, 335
RsaNI	GTAC	2 cut(s)	308, 334
RseI	CAYNNNNRTG	1 cut(s)	384
SaqAI	TTAA	3 cut(s)	48, 461, 696
SatI	GCNGC	4 cut(s)	119, 159, 591, 713
Sau3AI	GATC	3 cut(s)	357, 454, 547
ScrFI	CCNGG	3 cut(s)	163, 620, 664
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	6 cut(s)	22, 78, 105, 315, 361, 669
SmiMI	CAYNNNNRTG	1 cut(s)	384
SmlI	CTYRAG	2 cut(s)	460, 510
SmoI	CTYRAG	2 cut(s)	460, 510
SnaBI	TACGTA	1 cut(s)	607
Sse9I	AATT	2 cut(s)	8, 401
SsiI	CCGC	2 cut(s)	176, 544
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	3 cut(s)	161, 618, 662
TaaI	ACNGT	3 cut(s)	112, 229, 490
TaiI	ACGT	2 cut(s)	136, 609
TaqI	TCGA	1 cut(s)	405
TasI	AATT	2 cut(s)	8, 401
TatI	WGTACW	1 cut(s)	307
TfiI	GAWTC	1 cut(s)	481
Tru1I	TTAA	3 cut(s)	48, 461, 696
Tru9I	TTAA	3 cut(s)	48, 461, 696
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	4 cut(s)	118, 158, 590, 712
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	4 cut(s)	21, 362, 411, 640
TspGWI	ACGGA	1 cut(s)	740
TspRI	CASTG	1 cut(s)	48
Van91I	CCANNNNNTGG	1 cut(s)	625
Vha464I	CTTAAG	1 cut(s)	460
VneI	GTGCAC	1 cut(s)	377
XapI	RAATTY	1 cut(s)	401
XbaI	TCTAGA	1 cut(s)	68
XceI	RCATGY	3 cut(s)	130, 280, 314
XspI	CTAG	1 cut(s)	69
Zsp2I	ATGCAT	2 cut(s)	93, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.