Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8337093.1

Orthogroup ID

OG0001052

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 941

Gene Structure 940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8337093.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 940 bp

ctgtacttcgatggccagaggttccgcagcactataaaagaaaaggatctcagccctgtttggaacgagagcttctacttcaacatctctgatccttcaaacctccactatcttagtctcgaggcctatgtctacaacgatgtcaaagctactcactccaggtcctttcttggaaagatcagcctcactggaaattcatttgtcccctattctgatgctgttgtcttgcattaccctttggaaaagcgtggcatcttctcacgtgtaagaggagagctcggcttgaaggtttatgttactgatgacccaacaattaagtcctccatgccattgcctgcttctgaatccgttactgatcaggatccaggccttgcacagacccaaggagtttcgactcctggcatgagctcatttcggagtgagaaatctcagacaagacacacctttcaccatctgccgaatccaggtcaagagagccaacatcagcatcatgcttctgctgcaccagatactcattatgtacccaagtatgaagttgatcaaatgaaatctgaaccgcagcctgcaaagctggttcgcatgtactctgcttcagcatcacaacctgttgactatgcacttaaagagacaagcccttaccttggaggtgggagagttgttggtggacgtgttattcacggagacaagactgcaagcacctatgatctagttgaaaggatgtactttctctatgtaagggttgttaaagctcgcgagcttcctgccatggatgttactggaagtctagatccttatgttgaagctagaattggaaactacaaagggattacaaaacactacgagaagcaacaaaatccagtatggaatcaagttttcgctttttcaaaggaccgcatgcaagcatctgtgttagaagttgtggttaaagacaaggacctgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005789 GO:0007154 GO:0007165 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030100 GO:0030133 GO:0030334 GO:0030336 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032879 GO:0035556 GO:0040012 GO:0040013 GO:0042175 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044464 GO:0045202 GO:0045806 GO:0046872 GO:0046928 GO:0048167 GO:0048168 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0051046 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051270 GO:0051271 GO:0051588 GO:0051716 GO:0055037 GO:0060341 GO:0060627 GO:0065007 GO:0065008 GO:0070382 GO:0080134 GO:0097458 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098827 GO:0099177 GO:0099501 GO:0099503 GO:1902882 GO:1902883 GO:1903530 GO:2000145 GO:2000146

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

313

Amino Acids

35.28

Weight (kDa)

7.98

Isoelectric Point (pI)

45.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11610 AT4G11610 AT4G11610
fragaria_vesca	FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_5g02110 FvH4_7g13890 FvH4_7g13890 FvH4_7g13890 FvH4_7g13890 FvH4_7g13890
malus_domestica	MD01G1055400.v1.1 MD06G1081100.v1.1 MD07G1139900.v1.1 MD17G1025600.v1.1
prunus_persica	Prupe.2G165500_v2.0.a1 Prupe.2G165500_v2.0.a1 Prupe.5G098200_v2.0.a1 Prupe.5G098200_v2.0.a1
pyrus_communis	pycom01g08090 pycom06g07810 pycom07g13790 pycom14g09900 pycom17g16030
rosa_chinensis	RchiOBHm_Chr1g0354121 RchiOBHm_Chr1g0354261 RchiOBHm_Chr7g0198021
rosa_laevigata	RLG00000003892 RLG00000028225
rosa_multiflora	Rmu_co8337093.1_g000001 Rmu_co8489259.1_g000001 Rmu_co8505511.1_g000001 Rmu_sc0000221.1_g000032 Rmu_sc0001926.1_g000016 Rmu_sc0006991.1_g000004
rosa_roxburghii	Rroxscaffold_3G00258010 Rroxscaffold_4G00301210
rosa_rugosa	Rorug01G0241600 Rorug01G0241700 Rorug07G0045400 Rorug07G0045500
rosa_samantha	Rh1AG252300 Rh1BG224200 Rh1CG236900 Rh1DG251200 Rh7AG168800 Rh7BG171900 Rh7CG178400 Rh7DG171200
rosa_wichuraiana	Rw1G022010 Rw1G022130 Rw7G014760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	1 cut(s)	753
AciI	CCGC	3 cut(s)	25, 557, 892
AclWI	GGATC	5 cut(s)	54, 86, 356, 369, 782
AcoI	YGGCCR	1 cut(s)	13
AcsI	RAATTY	1 cut(s)	193
AcuI	CTGAAG	1 cut(s)	576
AcvI	CACGTG	1 cut(s)	263
AfaI	GTAC	4 cut(s)	5, 522, 584, 722
AfiI	CCNNNNNNNGG	2 cut(s)	464, 641
AflIII	ACRYGT	2 cut(s)	262, 667
AgsI	TTSAA	6 cut(s)	82, 99, 286, 713, 800, 885
AjiI	CACGTC	1 cut(s)	668
AjnI	CCWGG	4 cut(s)	158, 364, 397, 463
AjuI	GAANNNNNNNTTGG	2 cut(s)	792, 824
AluBI	AGCT	8 cut(s)	72, 149, 277, 408, 571, 749, 757, 803
AluI	AGCT	8 cut(s)	72, 149, 277, 408, 571, 749, 757, 803
Alw21I	GWGCWC	2 cut(s)	279, 410
Alw26I	GTCTC	3 cut(s)	122, 620, 675
AlwI	GGATC	5 cut(s)	54, 86, 356, 369, 782
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	3 cut(s)	13, 123, 367
ApeKI	GCWGC	3 cut(s)	27, 500, 559
ApoI	RAATTY	1 cut(s)	193
AspS9I	GGNCC	3 cut(s)	162, 889, 934
AsuHPI	GGTGA	1 cut(s)	440
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	3 cut(s)	162, 889, 934
BalI	TGGCCA	1 cut(s)	15
BamHI	GGATCC	1 cut(s)	361
BanII	GRGCYC	2 cut(s)	279, 410
BbrPI	CACGTG	1 cut(s)	263
Bbv12I	GWGCWC	2 cut(s)	279, 410
BbvI	GCAGC	3 cut(s)	39, 487, 571
BccI	CCATC	2 cut(s)	5, 459
BcgI	CGANNNNNNTGC	2 cut(s)	743, 777
BciT130I	CCWGG	4 cut(s)	160, 366, 399, 465
BclI	TGATCA	2 cut(s)	355, 538
BcoDI	GTCTC	3 cut(s)	122, 620, 675
BfaI	CTAG	3 cut(s)	707, 785, 804
BisI	GCNGC	3 cut(s)	28, 501, 560
BlsI	GCNGC	3 cut(s)	29, 502, 561
Bme1390I	CCNGG	4 cut(s)	160, 366, 399, 465
Bme18I	GGWCC	3 cut(s)	162, 889, 934
BmeT110I	CYCGRG	1 cut(s)	119
BmgBI	CACGTC	1 cut(s)	668
BmgT120I	GGNCC	3 cut(s)	162, 889, 934
BmiI	GGNNCC	2 cut(s)	23, 363
BmrFI	CCNGG	4 cut(s)	160, 366, 399, 465
BmsI	GCATC	5 cut(s)	205, 261, 496, 605, 911
BplI	GAGNNNNNCTC	2 cut(s)	261, 293
BpmI	CTGGAG	1 cut(s)	142
BsaAI	YACGTR	1 cut(s)	263
BsaBI	GATNNNNATC	1 cut(s)	360
BsaJI	CCNNGG	3 cut(s)	382, 640, 765
Bsc4I	CCNNNNNNNGG	2 cut(s)	464, 641
Bse1I	ACTGG	3 cut(s)	193, 781, 857
Bse3DI	GCAATG	1 cut(s)	329
Bse8I	GATNNNNATC	1 cut(s)	360
BseBI	CCWGG	4 cut(s)	160, 366, 399, 465
BseDI	CCNNGG	3 cut(s)	382, 640, 765
BseGI	GGATG	2 cut(s)	723, 775
BseJI	GATNNNNATC	1 cut(s)	360
BseLI	CCNNNNNNNGG	2 cut(s)	464, 641
BseMI	GCAATG	1 cut(s)	329
BseMII	CTCAG	2 cut(s)	64, 443
BseNI	ACTGG	3 cut(s)	193, 781, 857
BseRI	GAGGAG	1 cut(s)	285
BseXI	GCAGC	3 cut(s)	39, 487, 571
BsgI	GTGCAG	1 cut(s)	486
Bsh1236I	CGCG	1 cut(s)	753
BshFI	GGCC	3 cut(s)	15, 125, 369
BsiHKAI	GWGCWC	2 cut(s)	279, 410
BsiHKCI	CYCGRG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	2 cut(s)	464, 641
BsmAI	GTCTC	3 cut(s)	122, 620, 675
BsmFI	GGGAC	1 cut(s)	188
BsnI	GGCC	3 cut(s)	15, 125, 369
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	279, 410
Bsp143I	GATC	8 cut(s)	46, 91, 177, 355, 361, 538, 703, 787
Bsp19I	CCATGG	1 cut(s)	765
Bsp68I	TCGCGA	1 cut(s)	753
BspACI	CCGC	3 cut(s)	25, 557, 892
BspANI	GGCC	3 cut(s)	15, 125, 369
BspCNI	CTCAG	2 cut(s)	63, 442
BspFNI	CGCG	1 cut(s)	753
BspLI	GGNNCC	2 cut(s)	23, 363
BspPI	GGATC	5 cut(s)	54, 86, 356, 369, 782
BsrDI	GCAATG	1 cut(s)	329
BsrI	ACTGG	3 cut(s)	193, 781, 857
BssECI	CCNNGG	3 cut(s)	382, 640, 765
BssMI	GATC	8 cut(s)	46, 91, 177, 355, 361, 538, 703, 787
BssT1I	CCWWGG	3 cut(s)	382, 640, 765
Bst2UI	CCWGG	4 cut(s)	160, 366, 399, 465
BstBAI	YACGTR	1 cut(s)	263
BstC8I	GCNNGC	7 cut(s)	336, 564, 694, 751, 755, 896, 900
BstDEI	CTNAG	3 cut(s)	50, 113, 429
BstDSI	CCRYGG	1 cut(s)	765
BstF5I	GGATG	2 cut(s)	723, 775
BstFNI	CGCG	1 cut(s)	753
BstKTI	GATC	8 cut(s)	49, 94, 180, 358, 364, 541, 706, 790
BstMAI	GTCTC	3 cut(s)	122, 620, 675
BstMBI	GATC	8 cut(s)	46, 91, 177, 355, 361, 538, 703, 787
BstMWI	GCNNNNNNNGC	2 cut(s)	500, 568
BstNI	CCWGG	4 cut(s)	160, 366, 399, 465
BstNSI	RCATGY	2 cut(s)	583, 898
BstSCI	CCNGG	4 cut(s)	158, 364, 397, 463
BstUI	CGCG	1 cut(s)	753
BstV1I	GCAGC	3 cut(s)	39, 487, 571
BstX2I	RGATCY	3 cut(s)	46, 361, 787
BstYI	RGATCY	3 cut(s)	46, 361, 787
BsuRI	GGCC	3 cut(s)	15, 125, 369
BtgI	CCRYGG	1 cut(s)	765
BtrI	CACGTC	1 cut(s)	668
BtsCI	GGATG	2 cut(s)	723, 775
BtsIMutI	CAGTG	1 cut(s)	186
BtuMI	TCGCGA	1 cut(s)	753
Cac8I	GCNNGC	7 cut(s)	336, 564, 694, 751, 755, 896, 900
Cfr13I	GGNCC	3 cut(s)	162, 889, 934
Csp6I	GTAC	4 cut(s)	4, 521, 583, 721
CviAII	CATG	6 cut(s)	325, 403, 491, 580, 766, 895
CviQI	GTAC	4 cut(s)	4, 521, 583, 721
DdeI	CTNAG	3 cut(s)	50, 113, 429
DpnI	GATC	8 cut(s)	48, 93, 179, 357, 363, 540, 705, 789
DpnII	GATC	8 cut(s)	46, 91, 177, 355, 361, 538, 703, 787
EaeI	YGGCCR	1 cut(s)	13
Ecl136II	GAGCTC	2 cut(s)	277, 408
Eco130I	CCWWGG	3 cut(s)	382, 640, 765
Eco147I	AGGCCT	2 cut(s)	125, 369
Eco24I	GRGCYC	2 cut(s)	279, 410
Eco47I	GGWCC	3 cut(s)	162, 889, 934
Eco53kI	GAGCTC	2 cut(s)	277, 408
Eco57I	CTGAAG	1 cut(s)	576
Eco72I	CACGTG	1 cut(s)	263
Eco88I	CYCGRG	1 cut(s)	119
EcoICRI	GAGCTC	2 cut(s)	277, 408
EcoO109I	RGGNCCY	2 cut(s)	162, 934
EcoRII	CCWGG	4 cut(s)	158, 364, 397, 463
EcoT14I	CCWWGG	3 cut(s)	382, 640, 765
EcoT38I	GRGCYC	2 cut(s)	279, 410
ErhI	CCWWGG	3 cut(s)	382, 640, 765
FaeI	CATG	6 cut(s)	328, 406, 494, 583, 769, 898
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	6 cut(s)	324, 402, 490, 579, 765, 894
FbaI	TGATCA	2 cut(s)	355, 538
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	3 cut(s)	28, 501, 560
FokI	GGATG	2 cut(s)	730, 782
FriOI	GRGCYC	2 cut(s)	279, 410
Fsp4HI	GCNGC	3 cut(s)	28, 501, 560
FspBI	CTAG	3 cut(s)	707, 785, 804
GluI	GCNGC	3 cut(s)	28, 501, 560
GsuI	CTGGAG	1 cut(s)	142
HaeIII	GGCC	3 cut(s)	15, 125, 369
Hin1II	CATG	6 cut(s)	328, 406, 494, 583, 769, 898
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HinfI	GANTC	4 cut(s)	344, 394, 460, 865
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	3 cut(s)	133, 610, 665
Hpy188I	TCNGA	6 cut(s)	91, 214, 343, 417, 432, 553
Hpy188III	TCNNGA	5 cut(s)	119, 359, 470, 752, 785
Hpy8I	GTNNAC	3 cut(s)	133, 610, 665
HpyAV	CCTTC	2 cut(s)	105, 280
HpyCH4IV	ACGT	2 cut(s)	262, 667
HpyCH4V	TGCA	7 cut(s)	229, 374, 503, 566, 617, 692, 898
HpyF10VI	GCNNNNNNNGC	2 cut(s)	500, 568
HpyF3I	CTNAG	3 cut(s)	50, 113, 429
HpySE526I	ACGT	2 cut(s)	262, 667
Hsp92II	CATG	6 cut(s)	328, 406, 494, 583, 769, 898
Ksp22I	TGATCA	2 cut(s)	355, 538
Kzo9I	GATC	8 cut(s)	46, 91, 177, 355, 361, 538, 703, 787
Lsp1109I	GCAGC	3 cut(s)	39, 487, 571
LweI	GCATC	5 cut(s)	205, 261, 496, 605, 911
MaeI	CTAG	3 cut(s)	707, 785, 804
MaeII	ACGT	2 cut(s)	262, 667
MaeIII	GTNAC	3 cut(s)	295, 349, 772
MalI	GATC	8 cut(s)	48, 93, 179, 357, 363, 540, 705, 789
MboI	GATC	8 cut(s)	46, 91, 177, 355, 361, 538, 703, 787
MboII	GAAGA	1 cut(s)	247
MflI	RGATCY	3 cut(s)	46, 361, 787
MhlI	GDGCHC	2 cut(s)	279, 410
MlsI	TGGCCA	1 cut(s)	15
MluCI	AATT	3 cut(s)	193, 312, 807
MluNI	TGGCCA	1 cut(s)	15
MlyI	GAGTC	1 cut(s)	388
MnlI	CCTC	7 cut(s)	12, 113, 115, 194, 263, 331, 638
Mox20I	TGGCCA	1 cut(s)	15
MscI	TGGCCA	1 cut(s)	15
MseI	TTAA	4 cut(s)	315, 621, 744, 924
Msp20I	TGGCCA	1 cut(s)	15
MspR9I	CCNGG	4 cut(s)	160, 366, 399, 465
MvaI	CCWGG	4 cut(s)	160, 366, 399, 465
MvnI	CGCG	1 cut(s)	753
MwoI	GCNNNNNNNGC	2 cut(s)	500, 568
NcoI	CCATGG	1 cut(s)	765
NdeII	GATC	8 cut(s)	46, 91, 177, 355, 361, 538, 703, 787
NlaIII	CATG	6 cut(s)	328, 406, 494, 583, 769, 898
NlaIV	GGNNCC	2 cut(s)	23, 363
NmeAIII	GCCGAG	1 cut(s)	258
NruI	TCGCGA	1 cut(s)	753
NspI	RCATGY	2 cut(s)	583, 898
PaeI	GCATGC	1 cut(s)	898
PaeR7I	CTCGAG	1 cut(s)	119
PceI	AGGCCT	2 cut(s)	125, 369
PfeI	GAWTC	3 cut(s)	344, 460, 865
PkrI	GCNGC	3 cut(s)	29, 502, 561
PleI	GAGTC	1 cut(s)	388
PmaCI	CACGTG	1 cut(s)	263
PmlI	CACGTG	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	388
Ppu21I	YACGTR	1 cut(s)	263
PpuMI	RGGWCCY	2 cut(s)	162, 934
Psp124BI	GAGCTC	2 cut(s)	279, 410
Psp5II	RGGWCCY	2 cut(s)	162, 934
Psp6I	CCWGG	4 cut(s)	158, 364, 397, 463
PspCI	CACGTG	1 cut(s)	263
PspGI	CCWGG	4 cut(s)	158, 364, 397, 463
PspN4I	GGNNCC	2 cut(s)	23, 363
PspPI	GGNCC	3 cut(s)	162, 889, 934
PspPPI	RGGWCCY	2 cut(s)	162, 934
PsuI	RGATCY	3 cut(s)	46, 361, 787
RruI	TCGCGA	1 cut(s)	753
RsaI	GTAC	4 cut(s)	5, 522, 584, 722
RsaNI	GTAC	4 cut(s)	4, 521, 583, 721
SacI	GAGCTC	2 cut(s)	279, 410
SaqAI	TTAA	4 cut(s)	315, 621, 744, 924
SatI	GCNGC	3 cut(s)	28, 501, 560
Sau3AI	GATC	8 cut(s)	46, 91, 177, 355, 361, 538, 703, 787
Sau96I	GGNCC	3 cut(s)	162, 889, 934
SchI	GAGTC	1 cut(s)	388
ScrFI	CCNGG	4 cut(s)	160, 366, 399, 465
SduI	GDGCHC	2 cut(s)	279, 410
SfaNI	GCATC	5 cut(s)	205, 261, 496, 605, 911
Sfr274I	CTCGAG	1 cut(s)	119
SinI	GGWCC	3 cut(s)	162, 889, 934
SlaI	CTCGAG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
SphI	GCATGC	1 cut(s)	898
Sse9I	AATT	3 cut(s)	193, 312, 807
SseBI	AGGCCT	2 cut(s)	125, 369
SsiI	CCGC	3 cut(s)	25, 557, 892
SspMI	CTAG	3 cut(s)	707, 785, 804
SstI	GAGCTC	2 cut(s)	279, 410
StuI	AGGCCT	2 cut(s)	125, 369
StyD4I	CCNGG	4 cut(s)	158, 364, 397, 463
StyI	CCWWGG	3 cut(s)	382, 640, 765
TaiI	ACGT	2 cut(s)	265, 670
TaqI	TCGA	3 cut(s)	9, 120, 392
TasI	AATT	3 cut(s)	193, 312, 807
TatI	WGTACW	3 cut(s)	3, 582, 720
TfiI	GAWTC	3 cut(s)	344, 460, 865
Tru1I	TTAA	4 cut(s)	315, 621, 744, 924
Tru9I	TTAA	4 cut(s)	315, 621, 744, 924
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	3 cut(s)	27, 500, 559
TspDTI	ATGAA	3 cut(s)	186, 546, 560
TspGWI	ACGGA	2 cut(s)	337, 693
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	3 cut(s)	162, 889, 934
XapI	RAATTY	1 cut(s)	193
XbaI	TCTAGA	1 cut(s)	784
XceI	RCATGY	2 cut(s)	583, 898
XhoI	CTCGAG	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	3 cut(s)	707, 785, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.