Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003366

Physical Location & Seq

Genomic Coordinates Reverse (-)

26139950 .. 26142370

Gene Structure 2421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1153100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2421 bp

ATGACGAAACTACACTTCTCCTCCCTCCCCACCACCACCTTCATCATCGTCACCGCCGCCATCCTCTTCGCCGTTATCCCACCACCAGCTCATGCCCTCGGCTCCGGCTCAACCCTCGCCGTAATATCCGCTACCGGCACCGTCTGTGGTGTCGTTTCGGACCAACCGCGGCTGCGCATCGTCTGCTACCGCCGCGGCCAAACCGTCGAGGTCGAGCCCAACATCTCATTCTCAGCCATCTCCGGCGGCCGAACCTCCCTCTGCGGCATCCGCTCCGGCGGATACAGCCTCCTCTGCTGGGACAACATCACCTCCCAAAAGTCCACCTTCCAATCCAAACGCCTTTACTTCAACAGAACCGTTCCGTTAGAAAATCTCGCAGTCGGCGACGACCATATCTGCGCCAGAACCGTCGACACAGACACCGTAGAATGCTGGCGGCCCAACGACGTGCCCAAAATGCCATCTAGGGCGGACCAATTCTCCTCGATTTCATCTGGATCGGGCTTCTCTTGCGGAATTCTGAAACCCAGCCTCCAGGTTCGATGCTGGGGCAGAGCAACTGCAATGGCGGAAGAAATACAACACGGGTTCGGAAACATGTCAATGGAGACCATCACAGCTGGCGACTCGCATGTGTGCGGGATCAACATCACCGGGCTTCTGGTATGCAGGGGAAGAAATGGCGGCGGTCAATTGAACGCCCCTTCCGGCTCGCCTTTTGAGTACTCCGCTCTGTCACTCGGAGGAAATCACAGCTGCGCAATCAGAACTCATAATCAAACAGTCGTCTGCTGGGGAGGAATGGGCCAGTTTTCAATTAACAAAACAAATGGAGTGTCTTTTCAAATTTTAGCTTCTGGGTCGGATTTCATATGTGGATTAACCACCAGGAATTTTTCGATTGTTTGTTGGGGTCCGGGCTGGCCCATTCTCTCCGGTTCAGAATCAGGGGTGGAGCTCGAATTGCCCGAAATTCTCCCCGGTTCTTGTGTCAATTCCTCCTGCAGTGAATGTGGAATTTACCCTCAGTCTCAAAGACTCTGTTTTGGTACTGGTAACATTTGCAACCGCTGTTTTTCTCCAATTTCAGTGCCCCCACCAGCATTACCACCGCCGCCATCAACACCGCCACAGACGTCAACGCGGCGGTCTGCGACGTTGACTACGGGTTTATTGGTGTTTGCCATTGTGGGTTCTGTCGGAGGATTTGCAGGTATTTGTACAGTTATTTATTGTTTGTGGATTGGCGGTTGTTTTGGGAACAAGAAGATTCATAATTCAGTTCAGCCGACAATTACTAGAGCTGCAAGCTCAAACAATGGCAATGGGACAACGTCAAACAATAGTCCTCCGTCGAGATCGTCCACCATCCGCCGCCAGGGCTCGAGGATCATGCGGCGGCAGAGGAGCGGAACATCCTCGAAGCATCCTGACAGGGCGGAGGAGTTTTCACTGTCCGAGCTCGCGGGCGCCACGAATGACTTCTCAATGGAGAACAAGATTGGCTCCGGAAGCTTCGGAGTTGTATATAGGGGCAAACTGCAAGACGGCCGGGAAGTTGCGATCAAGCGAGGCGAAACGGCCTCGAAGATGAAGAAGTTTCAGGAGAAGGAGAGCGCATTCGATTCGGAAGTTGCGTTCTTGTCGAGAGTTCATCACAAGCACCTCGTGAGGCTTGTCGGATATTGCGAAGAGAGGGATGAGAGGCTTTTGGTATATGAGTACATGAAAAACGGTGCGCTTTTCGATCACTTGCATGACAAGAACAATGTGGAGAGGAGTAGCAGTTTGTTGAATTCGTGGAGAGTGAGGATCAAGGTTGCATTGGATGCTTCAAGAGGCATTGAGTATCTGCACAATTACGCCGTGCCGCCTATCATTCATCGAGATATCAAATCATCGAATATCTTGCTCGACGCGACTTGGACCGCGAGGGTGTCTGATTTCGGGTTGTCGTTGATGGGGCCGGACTCAGAGGCGGATTTTAGGCCAACGAAGGCGGCAGGGACGGTTGGCTACATTGATCCGGAGTACTATGGACTCAACTTGTTGACAGCAAAGAGCGATGTCTATGGACTTGGTGTGGTGCTATTGGAGCTTCTGACGGGGAAGAGGGCGATATTTAAGGATGCGGAGAACGAGGGGACGCCTATAAGCGTGGTGGATTTCGCAGTGCCGGCGATTATGAGCGGGGAGTTGGTGAGGGTTTTGGACAGGCGGGTTGGGCCGCCGGAGGTGAATGAATCGGAGGCGATTGAGCTGATGGCGTATACCGCAATGCATTGCGTGAATTTGGAAGGGAAAGATAGGCCGACGATGGCGGACATTGTGGCGAATTTGGAGAGGGCGTTTGCTCTCTGCGATGAAAGCCCCGGCAACATATCTAGTGGTGGAAACTCCATTGTGTCTGCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0042802 GO:0042803 GO:0046983

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr RCC1_2

Protein Analysis

807

Amino Acids

86.75

Weight (kDa)

7.91

Isoelectric Point (pI)

49.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	497 - 779	9e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	497 - 781	2.4e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55950
fragaria_vesca	FvH4_3g38710 FvH4_7g24490
malus_domestica	MD00G1166500.v1.1 MD01G1153100.v1.1 MD03G1068800.v1.1 MD07G1222100.v1.1 MD11G1073300.v1.1
prunus_persica	Prupe.2G250300_v2.0.a1 Prupe.6G056600_v2.0.a1
pyrus_communis	pycom01g17070 pycom03g05510
rosa_chinensis	RchiOBHm_Chr1g0370251 RchiOBHm_Chr5g0065501 RchiOBHm_Chr5g0069861
rosa_laevigata	RLG00000027065 RLG00000036103
rosa_multiflora	Rmu_co8321277.1_g000001 Rmu_sc0000738.1_g000002 Rmu_sc0026893.1_g000001 Rmu_sc0037931.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011190 Rroxscaffold_4G00286710 Rroxscaffold_4G00287300
rosa_rugosa	Rorug01G0355200 Rorug05G0400300
rosa_samantha	Rh1AG363800 Rh1BG326900 Rh1CG340200 Rh1DG357300 Rh5AG457400 Rh5BG476200 Rh5CG500000 Rh5DG488000
rosa_wichuraiana	Rw1G032010 Rw5G042700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1142
Acc16I	TGCGCA	2 cut(s)	176, 763
Acc36I	ACCTGC	1 cut(s)	1205
AccB1I	GGYRCC	2 cut(s)	137, 1472
AccBSI	CCGCTC	4 cut(s)	273, 734, 1413, 2193
AccI	GTMKAC	2 cut(s)	414, 2273
AccII	CGCG	6 cut(s)	169, 195, 1147, 1469, 1922, 1934
AccIII	TCCGGA	2 cut(s)	1511, 2029
AclWI	GGATC	5 cut(s)	508, 653, 1400, 1823, 2021
AcoI	YGGCCR	3 cut(s)	196, 247, 1552
AcsI	RAATTY	8 cut(s)	519, 849, 895, 975, 1020, 1798, 2293, 2338
AcyI	GRCGYC	3 cut(s)	1139, 1473, 2150
AdeI	CACNNNGTG	1 cut(s)	1672
AfaI	GTAC	5 cut(s)	728, 1054, 1225, 1727, 2036
AfiI	CCNNNNNNNGG	2 cut(s)	298, 1381
AflIII	ACRYGT	1 cut(s)	600
AgsI	TTSAA	6 cut(s)	352, 700, 819, 848, 1798, 1839
AjiI	CACGTC	1 cut(s)	451
AjnI	CCWGG	3 cut(s)	537, 890, 1380
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AloI	GAACNNNNNNTCC	4 cut(s)	692, 724, 1625, 1657
Alw21I	GWGCWC	2 cut(s)	963, 1467
Alw26I	GTCTC	2 cut(s)	605, 1038
AlwI	GGATC	5 cut(s)	508, 653, 1400, 1823, 2021
Ama87I	CYCGRG	1 cut(s)	1387
Aor13HI	TCCGGA	2 cut(s)	1511, 2029
ApeKI	GCWGC	3 cut(s)	172, 759, 1307
ApoI	RAATTY	8 cut(s)	519, 849, 895, 975, 1020, 1798, 2293, 2338
ArsI	GACNNNNNNTTYG	2 cut(s)	824, 856
Asp700I	GAANNNNTTC	1 cut(s)	1484
AspLEI	GCGC	6 cut(s)	177, 404, 764, 1475, 1622, 1744
AspS9I	GGNCC	9 cut(s)	160, 441, 475, 808, 917, 927, 1929, 1967, 2228
AsuC2I	CCSGG	5 cut(s)	658, 921, 984, 1556, 2376
AsuHPI	GGTGA	5 cut(s)	43, 301, 646, 2215, 2251
AvaI	CYCGRG	1 cut(s)	1387
AvaII	GGWCC	4 cut(s)	160, 475, 917, 1929
BaeGI	GKGCMC	2 cut(s)	456, 1098
BanI	GGYRCC	2 cut(s)	137, 1472
BanII	GRGCYC	4 cut(s)	219, 963, 1388, 1467
BauI	CACGAG	1 cut(s)	1670
Bbv12I	GWGCWC	2 cut(s)	963, 1467
BbvI	GCAGC	3 cut(s)	159, 746, 1294
BccI	CCATC	9 cut(s)	68, 245, 472, 623, 1129, 1379, 1957, 2260, 2314
BceAI	ACGGC	5 cut(s)	56, 104, 1567, 1599, 1853
BcgI	CGANNNNNNTGC	6 cut(s)	1378, 1412, 1611, 1645, 1894, 1928
BciT130I	CCWGG	3 cut(s)	539, 892, 1382
BciVI	GTATCC	1 cut(s)	275
BcnI	CCSGG	5 cut(s)	658, 921, 984, 1556, 2376
BcoDI	GTCTC	2 cut(s)	605, 1038
BfaI	CTAG	3 cut(s)	468, 1302, 2388
BfmI	CTRYAG	2 cut(s)	1006, 2412
BfoI	RGCGCY	1 cut(s)	1476
BfuAI	ACCTGC	1 cut(s)	1205
BfuI	GTATCC	1 cut(s)	275
BglI	GCCNNNNNGGC	1 cut(s)	1383
BmcAI	AGTACT	2 cut(s)	728, 2036
Bme1390I	CCNGG	8 cut(s)	539, 658, 892, 921, 984, 1382, 1556, 2376
Bme18I	GGWCC	4 cut(s)	160, 475, 917, 1929
BmeT110I	CYCGRG	1 cut(s)	1387
BmgBI	CACGTC	1 cut(s)	451
BmgT120I	GGNCC	9 cut(s)	160, 441, 475, 808, 917, 927, 1929, 1967, 2228
BmiI	GGNNCC	6 cut(s)	103, 139, 918, 1474, 1510, 1968
BmrFI	CCNGG	8 cut(s)	539, 658, 892, 921, 984, 1382, 1556, 2376
BmsI	GCATC	6 cut(s)	186, 276, 536, 1438, 1822, 2122
BpmI	CTGGAG	1 cut(s)	521
BpuMI	CCSGG	5 cut(s)	658, 921, 984, 1556, 2376
BsaBI	GATNNNNATC	1 cut(s)	650
BsaHI	GRCGYC	3 cut(s)	1139, 1473, 2150
BsaI	GGTCTC	1 cut(s)	605
BsaJI	CCNNGG	6 cut(s)	97, 167, 193, 982, 1381, 2374
BsaWI	WCCGGW	3 cut(s)	938, 1511, 2029
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 1381
Bse118I	RCCGGY	2 cut(s)	134, 2179
Bse1I	ACTGG	2 cut(s)	811, 1060
Bse3DI	GCAATG	4 cut(s)	573, 1333, 2284, 2286
Bse8I	GATNNNNATC	1 cut(s)	650
BseAI	TCCGGA	2 cut(s)	1511, 2029
BseBI	CCWGG	3 cut(s)	539, 892, 1382
BseDI	CCNNGG	6 cut(s)	97, 167, 193, 982, 1381, 2374
BseGI	GGATG	8 cut(s)	60, 267, 1371, 1418, 1429, 1708, 1837, 2137
BseJI	GATNNNNATC	1 cut(s)	650
BseLI	CCNNNNNNNGG	2 cut(s)	298, 1381
BseMI	GCAATG	4 cut(s)	573, 1333, 2284, 2286
BseMII	CTCAG	3 cut(s)	246, 1043, 1989
BseNI	ACTGG	2 cut(s)	811, 1060
BseRI	GAGGAG	6 cut(s)	10, 281, 475, 1423, 1460, 1795
BseSI	GKGCMC	2 cut(s)	456, 1098
BseX3I	CGGCCG	2 cut(s)	247, 1552
BseXI	GCAGC	3 cut(s)	159, 746, 1294
BseYI	CCCAGC	4 cut(s)	297, 530, 549, 795
BsgI	GTGCAG	1 cut(s)	1841
Bsh1236I	CGCG	6 cut(s)	169, 195, 1147, 1469, 1922, 1934
Bsh1285I	CGRYCG	2 cut(s)	250, 1555
BshNI	GGYRCC	2 cut(s)	137, 1472
BsiEI	CGRYCG	2 cut(s)	250, 1555
BsiHKAI	GWGCWC	2 cut(s)	963, 1467
BsiHKCI	CYCGRG	1 cut(s)	1387
BslFI	GGGAC	4 cut(s)	314, 1345, 2023, 2161
BslI	CCNNNNNNNGG	2 cut(s)	298, 1381
BsmAI	GTCTC	2 cut(s)	605, 1038
BsmFI	GGGAC	4 cut(s)	314, 1345, 2023, 2161
BsmI	GAATGC	2 cut(s)	437, 1622
Bso31I	GGTCTC	1 cut(s)	605
BsoBI	CYCGRG	1 cut(s)	1387
Bsp1286I	GDGCHC	6 cut(s)	219, 456, 963, 1098, 1388, 1467
Bsp13I	TCCGGA	2 cut(s)	1511, 2029
Bsp1407I	TGTACA	1 cut(s)	1223
Bsp143I	GATC	8 cut(s)	500, 645, 1361, 1392, 1566, 1750, 1815, 2026
BspCNI	CTCAG	3 cut(s)	245, 1042, 1988
BspEI	TCCGGA	2 cut(s)	1511, 2029
BspFNI	CGCG	6 cut(s)	169, 195, 1147, 1469, 1922, 1934
BspLI	GGNNCC	6 cut(s)	103, 139, 918, 1474, 1510, 1968
BspMAI	CTGCAG	2 cut(s)	1010, 2416
BspMI	ACCTGC	1 cut(s)	1205
BspPI	GGATC	5 cut(s)	508, 653, 1400, 1823, 2021
BspT107I	GGYRCC	2 cut(s)	137, 1472
BspTNI	GGTCTC	1 cut(s)	605
BsrBI	CCGCTC	4 cut(s)	273, 734, 1413, 2193
BsrDI	GCAATG	4 cut(s)	573, 1333, 2284, 2286
BsrFI	RCCGGY	2 cut(s)	134, 2179
BsrGI	TGTACA	1 cut(s)	1223
BsrI	ACTGG	2 cut(s)	811, 1060
BssAI	RCCGGY	2 cut(s)	134, 2179
BssECI	CCNNGG	6 cut(s)	97, 167, 193, 982, 1381, 2374
BssMI	GATC	8 cut(s)	500, 645, 1361, 1392, 1566, 1750, 1815, 2026
BssNAI	GTATAC	1 cut(s)	2274
BssNI	GRCGYC	3 cut(s)	1139, 1473, 2150
BssSI	CACGAG	1 cut(s)	1670
Bst1107I	GTATAC	1 cut(s)	2274
Bst2BI	CACGAG	1 cut(s)	1670
Bst2UI	CCWGG	3 cut(s)	539, 892, 1382
Bst6I	CTCTTC	3 cut(s)	71, 1689, 2108
BstACI	GRCGYC	3 cut(s)	1139, 1473, 2150
BstAPI	GCANNNNNTGC	2 cut(s)	183, 1832
BstAUI	TGTACA	1 cut(s)	1223
BstC8I	GCNNGC	8 cut(s)	437, 625, 716, 926, 1312, 1467, 1471, 2181
BstDEI	CTNAG	3 cut(s)	232, 1029, 1975
BstDSI	CCRYGG	2 cut(s)	167, 193
BstF5I	GGATG	8 cut(s)	60, 267, 1371, 1418, 1429, 1708, 1837, 2137
BstFNI	CGCG	6 cut(s)	169, 195, 1147, 1469, 1922, 1934
BstH2I	RGCGCY	1 cut(s)	1476
BstHHI	GCGC	6 cut(s)	177, 404, 764, 1475, 1622, 1744
BstKTI	GATC	8 cut(s)	503, 648, 1364, 1395, 1569, 1753, 1818, 2029
BstMAI	GTCTC	2 cut(s)	605, 1038
BstMBI	GATC	8 cut(s)	500, 645, 1361, 1392, 1566, 1750, 1815, 2026
BstMCI	CGRYCG	2 cut(s)	250, 1555
BstNI	CCWGG	3 cut(s)	539, 892, 1382
BstNSI	RCATGY	2 cut(s)	604, 638
BstSCI	CCNGG	8 cut(s)	537, 656, 890, 919, 982, 1380, 1554, 2374
BstSFI	CTRYAG	2 cut(s)	1006, 2412
BstSLI	GKGCMC	2 cut(s)	456, 1098
BstUI	CGCG	6 cut(s)	169, 195, 1147, 1469, 1922, 1934
BstV1I	GCAGC	3 cut(s)	159, 746, 1294
BstZ17I	GTATAC	1 cut(s)	2274
BstZI	CGGCCG	2 cut(s)	247, 1552
BsuI	GTATCC	1 cut(s)	275
BtgI	CCRYGG	2 cut(s)	167, 193
BtgZI	GCGATG	2 cut(s)	2082, 2379
BtrI	CACGTC	1 cut(s)	451
BtsCI	GGATG	8 cut(s)	60, 267, 1371, 1418, 1429, 1708, 1837, 2137
BtsI	GCAGTG	2 cut(s)	1015, 2181
BtsIMutI	CAGTG	4 cut(s)	1015, 1098, 1454, 2181
BveI	ACCTGC	1 cut(s)	1205
Cac8I	GCNNGC	8 cut(s)	437, 625, 716, 926, 1312, 1467, 1471, 2181
CfoI	GCGC	6 cut(s)	177, 404, 764, 1475, 1622, 1744
Cfr10I	RCCGGY	2 cut(s)	134, 2179
Cfr13I	GGNCC	9 cut(s)	160, 441, 475, 808, 917, 927, 1929, 1967, 2228
Cfr42I	CCGCGG	2 cut(s)	170, 196
CseI	GACGC	2 cut(s)	1928, 2158
Csp6I	GTAC	5 cut(s)	727, 1053, 1224, 1726, 2035
CviAII	CATG	6 cut(s)	92, 601, 635, 1396, 1729, 1760
CviQI	GTAC	5 cut(s)	727, 1053, 1224, 1726, 2035
DdeI	CTNAG	3 cut(s)	232, 1029, 1975
DinI	GGCGCC	1 cut(s)	1474
DpnI	GATC	8 cut(s)	502, 647, 1363, 1394, 1568, 1752, 1817, 2028
DpnII	GATC	8 cut(s)	500, 645, 1361, 1392, 1566, 1750, 1815, 2026
DraIII	CACNNNGTG	1 cut(s)	1672
EaeI	YGGCCR	3 cut(s)	196, 247, 1552
EagI	CGGCCG	2 cut(s)	247, 1552
Eam1104I	CTCTTC	3 cut(s)	71, 1689, 2108
EarI	CTCTTC	3 cut(s)	71, 1689, 2108
EciI	GGCGGA	7 cut(s)	294, 488, 587, 1364, 1457, 1997, 2339
Ecl136II	GAGCTC	2 cut(s)	961, 1465
EclXI	CGGCCG	2 cut(s)	247, 1552
Eco24I	GRGCYC	4 cut(s)	219, 963, 1388, 1467
Eco31I	GGTCTC	1 cut(s)	605
Eco32I	GATATC	1 cut(s)	1894
Eco47I	GGWCC	4 cut(s)	160, 475, 917, 1929
Eco52I	CGGCCG	2 cut(s)	247, 1552
Eco53kI	GAGCTC	2 cut(s)	961, 1465
Eco88I	CYCGRG	1 cut(s)	1387
EcoICRI	GAGCTC	2 cut(s)	961, 1465
EcoRI	GAATTC	2 cut(s)	519, 1798
EcoRII	CCWGG	3 cut(s)	537, 890, 1380
EcoRV	GATATC	1 cut(s)	1894
EcoT22I	ATGCAT	1 cut(s)	2286
EcoT38I	GRGCYC	4 cut(s)	219, 963, 1388, 1467
EgeI	GGCGCC	1 cut(s)	1474
EheI	GGCGCC	1 cut(s)	1474
FaeI	CATG	6 cut(s)	95, 604, 638, 1399, 1732, 1763
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FaqI	GGGAC	4 cut(s)	314, 1345, 2023, 2161
FatI	CATG	6 cut(s)	91, 600, 634, 1395, 1728, 1759
FauI	CCCGC	4 cut(s)	635, 1462, 2186, 2214
FauNDI	CATATG	1 cut(s)	875
FblI	GTMKAC	2 cut(s)	414, 2273
FokI	GGATG	8 cut(s)	47, 254, 1358, 1405, 1416, 1715, 1844, 2144
FriOI	GRGCYC	4 cut(s)	219, 963, 1388, 1467
FspBI	CTAG	3 cut(s)	468, 1302, 2388
FspI	TGCGCA	2 cut(s)	176, 763
GlaI	GCGC	6 cut(s)	176, 403, 763, 1474, 1621, 1743
GsaI	CCCAGC	4 cut(s)	301, 534, 553, 799
GsuI	CTGGAG	1 cut(s)	521
HaeII	RGCGCY	1 cut(s)	1476
HgaI	GACGC	2 cut(s)	1928, 2158
HhaI	GCGC	6 cut(s)	177, 404, 764, 1475, 1622, 1744
Hin1I	GRCGYC	3 cut(s)	1139, 1473, 2150
Hin1II	CATG	6 cut(s)	95, 604, 638, 1399, 1732, 1763
Hin6I	GCGC	6 cut(s)	175, 402, 762, 1473, 1620, 1742
HinP1I	GCGC	6 cut(s)	175, 402, 762, 1473, 1620, 1742
HincII	GTYRAC	4 cut(s)	415, 1143, 1164, 2055
HindII	GTYRAC	4 cut(s)	415, 1143, 1164, 2055
HindIII	AAGCTT	1 cut(s)	1516
HinfI	GANTC	8 cut(s)	629, 947, 1041, 1273, 1628, 1973, 2043, 2246
HphI	GGTGA	5 cut(s)	43, 301, 646, 2215, 2251
Hpy166II	GTNNAC	7 cut(s)	324, 415, 1143, 1164, 1368, 2055, 2274
Hpy8I	GTNNAC	7 cut(s)	324, 415, 1143, 1164, 1368, 2055, 2274
Hpy99I	CGWCG	8 cut(s)	209, 392, 416, 452, 1162, 1360, 1922, 2320
HpyAV	CCTTC	6 cut(s)	49, 337, 717, 1606, 1993, 2294
HpyCH4IV	ACGT	4 cut(s)	450, 1139, 1160, 1337
HpyF3I	CTNAG	3 cut(s)	232, 1029, 1975
HpySE526I	ACGT	4 cut(s)	450, 1139, 1160, 1337
Hsp92I	GRCGYC	3 cut(s)	1139, 1473, 2150
Hsp92II	CATG	6 cut(s)	95, 604, 638, 1399, 1732, 1763
HspAI	GCGC	6 cut(s)	175, 402, 762, 1473, 1620, 1742
KasI	GGCGCC	1 cut(s)	1472
Kpn2I	TCCGGA	2 cut(s)	1511, 2029
KroI	GCCGGC	1 cut(s)	2179
KroNI	GCCGGC	1 cut(s)	2181
KspI	CCGCGG	2 cut(s)	170, 196
Kzo9I	GATC	8 cut(s)	500, 645, 1361, 1392, 1566, 1750, 1815, 2026
LmnI	GCTCC	6 cut(s)	107, 278, 958, 1410, 1514, 2098
Lsp1109I	GCAGC	3 cut(s)	159, 746, 1294
LweI	GCATC	6 cut(s)	186, 276, 536, 1438, 1822, 2122
MaeI	CTAG	3 cut(s)	468, 1302, 2388
MaeII	ACGT	4 cut(s)	450, 1139, 1160, 1337
MaeIII	GTNAC	3 cut(s)	49, 738, 1058
MalI	GATC	8 cut(s)	502, 647, 1363, 1394, 1568, 1752, 1817, 2028
MbiI	CCGCTC	4 cut(s)	273, 734, 1413, 2193
MboI	GATC	8 cut(s)	500, 645, 1361, 1392, 1566, 1750, 1815, 2026
MboII	GAAGA	8 cut(s)	58, 587, 690, 1282, 1603, 1609, 1706, 2125
MfeI	CAATTG	1 cut(s)	695
MhlI	GDGCHC	6 cut(s)	219, 456, 963, 1098, 1388, 1467
Mly113I	GGCGCC	1 cut(s)	1473
MlyI	GAGTC	4 cut(s)	623, 1035, 1967, 2037
MmeI	TCCRAC	3 cut(s)	846, 1183, 1663
Mph1103I	ATGCAT	1 cut(s)	2286
MroI	TCCGGA	2 cut(s)	1511, 2029
MroNI	GCCGGC	1 cut(s)	2179
MroXI	GAANNNNTTC	1 cut(s)	1484
MseI	TTAA	3 cut(s)	822, 884, 2127
MslI	CAYNNNNRTG	2 cut(s)	605, 1758
MspA1I	CMGCKG	5 cut(s)	169, 195, 623, 759, 1074
MspR9I	CCNGG	8 cut(s)	539, 658, 892, 921, 984, 1382, 1556, 2376
MunI	CAATTG	1 cut(s)	695
Mva1269I	GAATGC	2 cut(s)	437, 1622
MvaI	CCWGG	3 cut(s)	539, 892, 1382
MvnI	CGCG	6 cut(s)	169, 195, 1147, 1469, 1922, 1934
NaeI	GCCGGC	1 cut(s)	2181
NarI	GGCGCC	1 cut(s)	1473
NciI	CCSGG	5 cut(s)	658, 921, 984, 1556, 2376
NdeI	CATATG	1 cut(s)	875
NdeII	GATC	8 cut(s)	500, 645, 1361, 1392, 1566, 1750, 1815, 2026
NgoMIV	GCCGGC	1 cut(s)	2179
NlaIII	CATG	6 cut(s)	95, 604, 638, 1399, 1732, 1763
NlaIV	GGNNCC	6 cut(s)	103, 139, 918, 1474, 1510, 1968
NmeAIII	GCCGAG	1 cut(s)	78
NmuCI	GTSAC	2 cut(s)	49, 738
NsbI	TGCGCA	2 cut(s)	176, 763
NsiI	ATGCAT	1 cut(s)	2286
NspI	RCATGY	2 cut(s)	604, 638
PaeR7I	CTCGAG	1 cut(s)	1387
PciI	ACATGT	1 cut(s)	600
PcsI	WCGNNNNNNNCGW	4 cut(s)	384, 969, 1637, 1689
PctI	GAATGC	2 cut(s)	437, 1622
PdiI	GCCGGC	1 cut(s)	2181
PdmI	GAANNNNTTC	1 cut(s)	1484
PfeI	GAWTC	4 cut(s)	947, 1273, 1628, 2246
PflFI	GACNNNGTC	1 cut(s)	1336
PleI	GAGTC	4 cut(s)	623, 1035, 1967, 2037
PluTI	GGCGCC	1 cut(s)	1476
PpsI	GAGTC	4 cut(s)	623, 1035, 1967, 2037
PscI	ACATGT	1 cut(s)	600
Psp124BI	GAGCTC	2 cut(s)	963, 1467
Psp6I	CCWGG	3 cut(s)	537, 890, 1380
PspFI	CCCAGC	4 cut(s)	297, 530, 549, 795
PspGI	CCWGG	3 cut(s)	537, 890, 1380
PspN4I	GGNNCC	6 cut(s)	103, 139, 918, 1474, 1510, 1968
PspPI	GGNCC	9 cut(s)	160, 441, 475, 808, 917, 927, 1929, 1967, 2228
PspXI	VCTCGAGB	1 cut(s)	1387
PstI	CTGCAG	2 cut(s)	1010, 2416
PsyI	GACNNNGTC	1 cut(s)	1336
PvuII	CAGCTG	2 cut(s)	623, 759
RsaI	GTAC	5 cut(s)	728, 1054, 1225, 1727, 2036
RsaNI	GTAC	5 cut(s)	727, 1053, 1224, 1726, 2035
RseI	CAYNNNNRTG	2 cut(s)	605, 1758
SacI	GAGCTC	2 cut(s)	963, 1467
SacII	CCGCGG	2 cut(s)	170, 196
SalI	GTCGAC	1 cut(s)	413
SaqAI	TTAA	3 cut(s)	822, 884, 2127
Sau3AI	GATC	8 cut(s)	500, 645, 1361, 1392, 1566, 1750, 1815, 2026
Sau96I	GGNCC	9 cut(s)	160, 441, 475, 808, 917, 927, 1929, 1967, 2228
ScaI	AGTACT	2 cut(s)	728, 2036
SchI	GAGTC	4 cut(s)	623, 1035, 1967, 2037
ScrFI	CCNGG	8 cut(s)	539, 658, 892, 921, 984, 1382, 1556, 2376
SduI	GDGCHC	6 cut(s)	219, 456, 963, 1098, 1388, 1467
SfaNI	GCATC	6 cut(s)	186, 276, 536, 1438, 1822, 2122
SfcI	CTRYAG	2 cut(s)	1006, 2412
SfoI	GGCGCC	1 cut(s)	1474
Sfr274I	CTCGAG	1 cut(s)	1387
Sfr303I	CCGCGG	2 cut(s)	170, 196
SgrBI	CCGCGG	2 cut(s)	170, 196
SinI	GGWCC	4 cut(s)	160, 475, 917, 1929
SlaI	CTCGAG	1 cut(s)	1387
SmiMI	CAYNNNNRTG	2 cut(s)	605, 1758
SmlI	CTYRAG	1 cut(s)	1387
SmoI	CTYRAG	1 cut(s)	1387
SspDI	GGCGCC	1 cut(s)	1472
SspMI	CTAG	3 cut(s)	468, 1302, 2388
SstI	GAGCTC	2 cut(s)	963, 1467
StyD4I	CCNGG	8 cut(s)	537, 656, 890, 919, 982, 1380, 1554, 2374
TaiI	ACGT	4 cut(s)	453, 1142, 1163, 1340
TatI	WGTACW	4 cut(s)	726, 1223, 1725, 2034
TfiI	GAWTC	4 cut(s)	947, 1273, 1628, 2246
Tru1I	TTAA	3 cut(s)	822, 884, 2127
Tru9I	TTAA	3 cut(s)	822, 884, 2127
TscAI	CASTG	4 cut(s)	1015, 1098, 1461, 2181
TseFI	GTSAC	2 cut(s)	49, 738
TseI	GCWGC	3 cut(s)	172, 759, 1307
Tsp45I	GTSAC	2 cut(s)	49, 738
TspGWI	ACGGA	2 cut(s)	354, 1344
TspRI	CASTG	4 cut(s)	1015, 1098, 1461, 2181
Tth111I	GACNNNGTC	1 cut(s)	1336
VpaK11BI	GGWCC	4 cut(s)	160, 475, 917, 1929
XapI	RAATTY	8 cut(s)	519, 849, 895, 975, 1020, 1798, 2293, 2338
XceI	RCATGY	2 cut(s)	604, 638
XhoI	CTCGAG	1 cut(s)	1387
XmiI	GTMKAC	2 cut(s)	414, 2273
XmnI	GAANNNNTTC	1 cut(s)	1484
XspI	CTAG	3 cut(s)	468, 1302, 2388
ZraI	GACGTC	1 cut(s)	1140
ZrmI	AGTACT	2 cut(s)	728, 2036
Zsp2I	ATGCAT	1 cut(s)	2286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.