Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003366

Physical Location & Seq

Genomic Coordinates Reverse (-)

71459094 .. 71460188

Gene Structure 1095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34136

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGAATGGTAGCAGAGTCCTCTGTTGGGGAAATGGTATTGGAGCTGAGATTCAAAAAGGGTTCGAGAATGTGTTAATGTCAAGCTTAATTGCTGGAGAGTCTCATGCTTGTGGCTTAAGGAAAAATGGAACTTTGGTCTGCAAAGGGAACAATGATTCCGGGCAATTGAATGTACCTTATGGGGCCAAGTTTTCAGGCCTTGCATTGGGAGCAAATTTTACTTGTGCTATAAGGCAAAGCAATGGCTATGTTGTATGCTGGGGTCACAGTGATGTTGTTGGAAATGTTTCGTTTGAGTCGATTGTTGCAGGTTTGGATTTTGTATGTGGACTAACAAGAGGTAATCTATCAGTGATTTGTTGGGGACCAGGATGGTCTAGTTCTGAAAATGATGTTACTTTGGGATCGATCATTCCGGGTCCATGTGTACAAACTCCTTGTAGCAGCTGTGGTGTGTACCCAAATTCGGAGACTCTTTGTGGTGGGTCGGGGAATATATGCAACTCATGCCAGACCGAGCTTCCAGTTGCAGTGCCTTTGCTTCCAACAAGTCCACTGGAAAAAGGTTCTTCATCATCCATAGGAAAAAATAAGCTTTTGTTGGTTTTTGTAATAGTTGGATCAGTTGGGGCTTTTGCTGGACTTTGCACTGTTCTTTTCTGCTTATGGATTGGACTGTGCAGCTCTTGGTTCAACAACCGGGAGTCTGAGCAACTCACAAGTGCTGCTGACCCCAATGTAGGGGCTCTCGTTGAGATCCAAAACGTTCCTAATGCTCCATTTCAGCACTTTAGTAGTAGTTCATCATCAAAGCATGCAGACAAGACTGAAGAATTTGTATTAGCAGAGCTTTCTGCTGCCACTAAGCATTTCTCAACCCAAAACAAGATTGGTGCCGGGAGCTTTGGTATTGTATACAGAGGCAAGCTCTCCGATGGTCGCGAAGTGGCCATCAAGAGAGGAGATACTAGTACAAAAACCAAGAAATTCCAGGAGAAAGAAAGCGCGTTTGATTCTGAAGTAGCATTGCTGTCTCGGCTTCACCACAAGCATTTGGTGAAGCTAGTGGGATCGTGTGAAGGTTTATGTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0042802 GO:0042803 GO:0046983

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase RCC1_2

Protein Analysis

364

Amino Acids

38.24

Weight (kDa)

7.02

Isoelectric Point (pI)

33.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RCC1_2	PF13540	31 - 55	1.1e-06	Regulator of chromosome condensation (RCC1) repeat
Pkinase	PF00069	292 - 360	1.6e-08	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	293 - 360	1.2e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55950
fragaria_vesca	FvH4_3g38710 FvH4_7g24490
malus_domestica	MD00G1166500.v1.1 MD01G1153100.v1.1 MD03G1068800.v1.1 MD07G1222100.v1.1 MD11G1073300.v1.1
prunus_persica	Prupe.2G250300_v2.0.a1 Prupe.6G056600_v2.0.a1
pyrus_communis	pycom01g17070 pycom03g05510
rosa_chinensis	RchiOBHm_Chr1g0370251 RchiOBHm_Chr5g0065501 RchiOBHm_Chr5g0069861
rosa_laevigata	RLG00000027065 RLG00000036103
rosa_multiflora	Rmu_co8321277.1_g000001 Rmu_sc0000738.1_g000002 Rmu_sc0026893.1_g000001 Rmu_sc0037931.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011190 Rroxscaffold_4G00286710 Rroxscaffold_4G00287300
rosa_rugosa	Rorug01G0355200 Rorug05G0400300
rosa_samantha	Rh1AG363800 Rh1BG326900 Rh1CG340200 Rh1DG357300 Rh5AG457400 Rh5BG476200 Rh5CG500000 Rh5DG488000
rosa_wichuraiana	Rw1G032010 Rw5G042700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	299
AccB1I	GGYRCC	1 cut(s)	893
AccI	GTMKAC	1 cut(s)	915
AccII	CGCG	2 cut(s)	942, 1007
AclI	AACGTT	1 cut(s)	765
AclWI	GGATC	4 cut(s)	412, 628, 751, 1078
AcoI	YGGCCR	1 cut(s)	948
AcsI	RAATTY	4 cut(s)	214, 463, 833, 986
AcuI	CTGAAG	2 cut(s)	849, 1038
AfaI	GTAC	4 cut(s)	174, 429, 458, 973
AfiI	CCNNNNNNNGG	5 cut(s)	25, 205, 466, 740, 741
AflII	CTTAAG	1 cut(s)	115
AgsI	TTSAA	3 cut(s)	53, 169, 694
AhlI	ACTAGT	1 cut(s)	968
AjnI	CCWGG	2 cut(s)	367, 990
AloI	GAACNNNNNNTCC	2 cut(s)	140, 172
Alw26I	GTCTC	3 cut(s)	105, 464, 1038
AlwI	GGATC	4 cut(s)	412, 628, 751, 1078
AoxI	GGCC	3 cut(s)	183, 196, 948
ApeKI	GCWGC	4 cut(s)	444, 681, 725, 857
ApoI	RAATTY	4 cut(s)	214, 463, 833, 986
Asp700I	GAANNNNTTC	1 cut(s)	286
AspLEI	GCGC	1 cut(s)	1007
AspS9I	GGNCC	3 cut(s)	183, 365, 419
AsuC2I	CCSGG	4 cut(s)	160, 417, 701, 898
AsuHPI	GGTGA	2 cut(s)	1034, 1069
AvaII	GGWCC	2 cut(s)	365, 419
BalI	TGGCCA	1 cut(s)	950
BanI	GGYRCC	1 cut(s)	893
BanII	GRGCYC	1 cut(s)	748
BbvI	GCAGC	4 cut(s)	456, 693, 712, 844
BccI	CCATC	3 cut(s)	366, 929, 959
BciT130I	CCWGG	2 cut(s)	369, 992
BcnI	CCSGG	4 cut(s)	160, 417, 701, 898
BcoDI	GTCTC	3 cut(s)	105, 464, 1038
BcuI	ACTAGT	1 cut(s)	968
BfaI	CTAG	3 cut(s)	378, 969, 1064
BfrI	CTTAAG	1 cut(s)	115
BfuAI	ACCTGC	1 cut(s)	299
BisI	GCNGC	4 cut(s)	445, 682, 726, 858
BlsI	GCNGC	4 cut(s)	446, 683, 727, 859
Bme1390I	CCNGG	6 cut(s)	160, 369, 417, 701, 898, 992
Bme18I	GGWCC	2 cut(s)	365, 419
BmgT120I	GGNCC	3 cut(s)	183, 365, 419
BmiI	GGNNCC	4 cut(s)	184, 366, 420, 895
BmrFI	CCNGG	6 cut(s)	160, 369, 417, 701, 898, 992
BplI	GAGNNNNNCTC	2 cut(s)	912, 944
BpmI	CTGGAG	1 cut(s)	114
BpuMI	CCSGG	4 cut(s)	160, 417, 701, 898
Bsa29I	ATCGAT	1 cut(s)	407
BsaXI	ACNNNNNCTCC	2 cut(s)	892, 922
Bsc4I	CCNNNNNNNGG	5 cut(s)	25, 205, 466, 740, 741
Bse1I	ACTGG	2 cut(s)	524, 561
Bse3DI	GCAATG	2 cut(s)	247, 1025
BseBI	CCWGG	2 cut(s)	369, 992
BseCI	ATCGAT	1 cut(s)	407
BseGI	GGATG	2 cut(s)	377, 575
BseLI	CCNNNNNNNGG	5 cut(s)	25, 205, 466, 740, 741
BseMI	GCAATG	2 cut(s)	247, 1025
BseMII	CTCAG	2 cut(s)	36, 699
BseNI	ACTGG	2 cut(s)	524, 561
BseRI	GAGGAG	1 cut(s)	975
BseXI	GCAGC	4 cut(s)	456, 693, 712, 844
BseYI	CCCAGC	1 cut(s)	258
BsgI	GTGCAG	1 cut(s)	700
Bsh1236I	CGCG	2 cut(s)	942, 1007
BshFI	GGCC	3 cut(s)	185, 198, 950
BshNI	GGYRCC	1 cut(s)	893
BshVI	ATCGAT	1 cut(s)	407
BsiSI	CCGG	4 cut(s)	159, 416, 700, 897
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	5 cut(s)	25, 205, 466, 740, 741
BsmAI	GTCTC	3 cut(s)	105, 464, 1038
BsmFI	GGGAC	1 cut(s)	378
BsnI	GGCC	3 cut(s)	185, 198, 950
Bsp1286I	GDGCHC	1 cut(s)	748
Bsp1407I	TGTACA	1 cut(s)	427
Bsp143I	GATC	5 cut(s)	404, 408, 620, 756, 1070
Bsp68I	TCGCGA	1 cut(s)	942
BspANI	GGCC	3 cut(s)	185, 198, 950
BspCNI	CTCAG	2 cut(s)	37, 700
BspDI	ATCGAT	1 cut(s)	407
BspFNI	CGCG	2 cut(s)	942, 1007
BspLI	GGNNCC	4 cut(s)	184, 366, 420, 895
BspMI	ACCTGC	1 cut(s)	299
BspPI	GGATC	4 cut(s)	412, 628, 751, 1078
BspT107I	GGYRCC	1 cut(s)	893
BspTI	CTTAAG	1 cut(s)	115
BsrDI	GCAATG	2 cut(s)	247, 1025
BsrGI	TGTACA	1 cut(s)	427
BsrI	ACTGG	2 cut(s)	524, 561
BssMI	GATC	5 cut(s)	404, 408, 620, 756, 1070
BssNAI	GTATAC	1 cut(s)	916
Bst1107I	GTATAC	1 cut(s)	916
Bst2UI	CCWGG	2 cut(s)	369, 992
Bst4CI	ACNGT	3 cut(s)	269, 652, 678
BstAFI	CTTAAG	1 cut(s)	115
BstAPI	GCANNNNNTGC	1 cut(s)	507
BstAUI	TGTACA	1 cut(s)	427
BstC8I	GCNNGC	2 cut(s)	816, 926
BstDEI	CTNAG	3 cut(s)	45, 708, 864
BstF5I	GGATG	2 cut(s)	377, 575
BstFNI	CGCG	2 cut(s)	942, 1007
BstHHI	GCGC	1 cut(s)	1007
BstKTI	GATC	5 cut(s)	407, 411, 623, 759, 1073
BstMAI	GTCTC	3 cut(s)	105, 464, 1038
BstMBI	GATC	5 cut(s)	404, 408, 620, 756, 1070
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 507, 1036
BstNI	CCWGG	2 cut(s)	369, 992
BstNSI	RCATGY	1 cut(s)	818
BstSCI	CCNGG	6 cut(s)	158, 367, 415, 699, 896, 990
BstUI	CGCG	2 cut(s)	942, 1007
BstV1I	GCAGC	4 cut(s)	456, 693, 712, 844
BstX2I	RGATCY	1 cut(s)	756
BstYI	RGATCY	1 cut(s)	756
BstZ17I	GTATAC	1 cut(s)	916
Bsu15I	ATCGAT	1 cut(s)	407
BsuRI	GGCC	3 cut(s)	185, 198, 950
BsuTUI	ATCGAT	1 cut(s)	407
BtsCI	GGATG	2 cut(s)	377, 575
BtsI	GCAGTG	1 cut(s)	537
BtsIMutI	CAGTG	5 cut(s)	274, 357, 537, 554, 648
BtuMI	TCGCGA	1 cut(s)	942
BveI	ACCTGC	1 cut(s)	299
Cac8I	GCNNGC	2 cut(s)	816, 926
CfoI	GCGC	1 cut(s)	1007
Cfr13I	GGNCC	3 cut(s)	183, 365, 419
ClaI	ATCGAT	1 cut(s)	407
Csp6I	GTAC	4 cut(s)	173, 428, 457, 972
CviAII	CATG	4 cut(s)	104, 423, 507, 815
CviQI	GTAC	4 cut(s)	173, 428, 457, 972
DdeI	CTNAG	3 cut(s)	45, 708, 864
DpnI	GATC	5 cut(s)	406, 410, 622, 758, 1072
DpnII	GATC	5 cut(s)	404, 408, 620, 756, 1070
EaeI	YGGCCR	1 cut(s)	948
Eco147I	AGGCCT	1 cut(s)	198
Eco24I	GRGCYC	1 cut(s)	748
Eco47I	GGWCC	2 cut(s)	365, 419
Eco57I	CTGAAG	2 cut(s)	849, 1038
EcoRII	CCWGG	2 cut(s)	367, 990
EcoT38I	GRGCYC	1 cut(s)	748
FaeI	CATG	4 cut(s)	107, 426, 510, 818
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	4 cut(s)	103, 422, 506, 814
FblI	GTMKAC	1 cut(s)	915
Fnu4HI	GCNGC	4 cut(s)	445, 682, 726, 858
FokI	GGATG	2 cut(s)	384, 562
FriOI	GRGCYC	1 cut(s)	748
Fsp4HI	GCNGC	4 cut(s)	445, 682, 726, 858
FspBI	CTAG	3 cut(s)	378, 969, 1064
GlaI	GCGC	1 cut(s)	1006
GluI	GCNGC	4 cut(s)	445, 682, 726, 858
GsaI	CCCAGC	1 cut(s)	262
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	3 cut(s)	185, 198, 950
HapII	CCGG	4 cut(s)	159, 416, 700, 897
HhaI	GCGC	1 cut(s)	1007
Hin1II	CATG	4 cut(s)	107, 426, 510, 818
Hin6I	GCGC	1 cut(s)	1005
HinP1I	GCGC	1 cut(s)	1005
HindIII	AAGCTT	2 cut(s)	82, 593
HinfI	GANTC	8 cut(s)	15, 49, 98, 155, 296, 472, 704, 1013
HpaII	CCGG	4 cut(s)	159, 416, 700, 897
HphI	GGTGA	2 cut(s)	1034, 1069
Hpy166II	GTNNAC	5 cut(s)	329, 428, 457, 554, 916
Hpy188I	TCNGA	5 cut(s)	385, 469, 709, 934, 1018
Hpy188III	TCNNGA	3 cut(s)	64, 941, 955
Hpy8I	GTNNAC	5 cut(s)	329, 428, 457, 554, 916
HpyAV	CCTTC	1 cut(s)	1073
HpyCH4III	ACNGT	3 cut(s)	269, 652, 678
HpyCH4IV	ACGT	1 cut(s)	765
HpyCH4V	TGCA	8 cut(s)	141, 203, 308, 501, 530, 648, 681, 818
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 507, 1036
HpyF3I	CTNAG	3 cut(s)	45, 708, 864
HpySE526I	ACGT	1 cut(s)	765
Hsp92II	CATG	4 cut(s)	107, 426, 510, 818
HspAI	GCGC	1 cut(s)	1005
Kzo9I	GATC	5 cut(s)	404, 408, 620, 756, 1070
LmnI	GCTCC	4 cut(s)	41, 209, 781, 900
Lsp1109I	GCAGC	4 cut(s)	456, 693, 712, 844
MaeI	CTAG	3 cut(s)	378, 969, 1064
MaeII	ACGT	1 cut(s)	765
MaeIII	GTNAC	2 cut(s)	263, 394
MalI	GATC	5 cut(s)	406, 410, 622, 758, 1072
MboI	GATC	5 cut(s)	404, 408, 620, 756, 1070
MboII	GAAGA	2 cut(s)	561, 842
MfeI	CAATTG	1 cut(s)	164
MflI	RGATCY	1 cut(s)	756
MhlI	GDGCHC	1 cut(s)	748
MlsI	TGGCCA	1 cut(s)	950
MluCI	AATT	6 cut(s)	87, 164, 214, 463, 833, 986
MluNI	TGGCCA	1 cut(s)	950
MlyI	GAGTC	5 cut(s)	24, 107, 305, 466, 713
MmeI	TCCRAC	3 cut(s)	259, 569, 598
MnlI	CCTC	4 cut(s)	29, 332, 914, 953
Mox20I	TGGCCA	1 cut(s)	950
MroXI	GAANNNNTTC	1 cut(s)	286
MscI	TGGCCA	1 cut(s)	950
MseI	TTAA	3 cut(s)	74, 86, 116
MslI	CAYNNNNRTG	2 cut(s)	108, 270
Msp20I	TGGCCA	1 cut(s)	950
MspA1I	CMGCKG	1 cut(s)	447
MspCI	CTTAAG	1 cut(s)	115
MspI	CCGG	4 cut(s)	159, 416, 700, 897
MspR9I	CCNGG	6 cut(s)	160, 369, 417, 701, 898, 992
MunI	CAATTG	1 cut(s)	164
MvaI	CCWGG	2 cut(s)	369, 992
MvnI	CGCG	2 cut(s)	942, 1007
MwoI	GCNNNNNNNGC	3 cut(s)	209, 507, 1036
NciI	CCSGG	4 cut(s)	160, 417, 701, 898
NdeII	GATC	5 cut(s)	404, 408, 620, 756, 1070
NlaIII	CATG	4 cut(s)	107, 426, 510, 818
NlaIV	GGNNCC	4 cut(s)	184, 366, 420, 895
NmeAIII	GCCGAG	1 cut(s)	1015
NmuCI	GTSAC	1 cut(s)	263
NruI	TCGCGA	1 cut(s)	942
NspI	RCATGY	1 cut(s)	818
PaeI	GCATGC	1 cut(s)	818
PceI	AGGCCT	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	1 cut(s)	296
PdmI	GAANNNNTTC	1 cut(s)	286
PfeI	GAWTC	3 cut(s)	49, 155, 1013
PfoI	TCCNGGA	1 cut(s)	990
PkrI	GCNGC	4 cut(s)	446, 683, 727, 859
PleI	GAGTC	5 cut(s)	23, 106, 304, 466, 712
PpsI	GAGTC	5 cut(s)	23, 106, 304, 466, 712
Psp1406I	AACGTT	1 cut(s)	765
Psp6I	CCWGG	2 cut(s)	367, 990
PspFI	CCCAGC	1 cut(s)	258
PspGI	CCWGG	2 cut(s)	367, 990
PspN4I	GGNNCC	4 cut(s)	184, 366, 420, 895
PspPI	GGNCC	3 cut(s)	183, 365, 419
PsuI	RGATCY	1 cut(s)	756
PvuII	CAGCTG	1 cut(s)	447
RruI	TCGCGA	1 cut(s)	942
RsaI	GTAC	4 cut(s)	174, 429, 458, 973
RsaNI	GTAC	4 cut(s)	173, 428, 457, 972
RseI	CAYNNNNRTG	2 cut(s)	108, 270
SaqAI	TTAA	3 cut(s)	74, 86, 116
SatI	GCNGC	4 cut(s)	445, 682, 726, 858
Sau3AI	GATC	5 cut(s)	404, 408, 620, 756, 1070
Sau96I	GGNCC	3 cut(s)	183, 365, 419
SchI	GAGTC	5 cut(s)	24, 107, 305, 466, 713
ScrFI	CCNGG	6 cut(s)	160, 369, 417, 701, 898, 992
SduI	GDGCHC	1 cut(s)	748
SinI	GGWCC	2 cut(s)	365, 419
SmiMI	CAYNNNNRTG	2 cut(s)	108, 270
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
SpeI	ACTAGT	1 cut(s)	968
SphI	GCATGC	1 cut(s)	818
Sse9I	AATT	6 cut(s)	87, 164, 214, 463, 833, 986
SseBI	AGGCCT	1 cut(s)	198
SspMI	CTAG	3 cut(s)	378, 969, 1064
StuI	AGGCCT	1 cut(s)	198
StyD4I	CCNGG	6 cut(s)	158, 367, 415, 699, 896, 990
TaaI	ACNGT	3 cut(s)	269, 652, 678
TaiI	ACGT	1 cut(s)	768
TaqI	TCGA	3 cut(s)	63, 299, 407
TaqII	GACCGA	1 cut(s)	530
TasI	AATT	6 cut(s)	87, 164, 214, 463, 833, 986
TatI	WGTACW	2 cut(s)	427, 971
TfiI	GAWTC	3 cut(s)	49, 155, 1013
Tru1I	TTAA	3 cut(s)	74, 86, 116
Tru9I	TTAA	3 cut(s)	74, 86, 116
TscAI	CASTG	5 cut(s)	274, 357, 537, 561, 655
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	4 cut(s)	444, 681, 725, 857
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	3 cut(s)	17, 561, 792
TspRI	CASTG	5 cut(s)	274, 357, 537, 561, 655
Vha464I	CTTAAG	1 cut(s)	115
VpaK11BI	GGWCC	2 cut(s)	365, 419
XapI	RAATTY	4 cut(s)	214, 463, 833, 986
XceI	RCATGY	1 cut(s)	818
XcmI	CCANNNNNNNNNTGG	1 cut(s)	887
XmiI	GTMKAC	1 cut(s)	915
XmnI	GAANNNNTTC	1 cut(s)	286
XspI	CTAG	3 cut(s)	378, 969, 1064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.