Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037931.1

Orthogroup ID

OG0003366

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 515

Gene Structure 515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037931.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 515 bp

gtggtgggtcggggaatatatgcaactcatgccagaccgagcttccagttgcagtgcctttgcttccaacaagtccactggcaaaaggttcttcatcatccataggaaaaaataagcttttgttggtttttgtaatagttggatcagttggggcttttgctggactttgcactgttcttttctgcttatggattggactgtgcagctcttggttcaacaaccgggagtctgagcaactcacaagtgctgctgaccccaatgtaggggctctggttgagatccaaaacgttcctaatgctccatttcagcactttagtagtagttcatcatcaaagcatgcagataagactgaagaatttgtattagcagagctttctgctgccactaagcatttctcaacccaaaacaagattggtgccgggagctttggtatagtatacagaggcaagctctccgatggtcgcgaagtggccatcaagagaggagatactagtacaaaaaccaagaaattccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0042802 GO:0042803 GO:0046983

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase RCC1_2

Protein Analysis

171

Amino Acids

18.01

Weight (kDa)

8.87

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55950
fragaria_vesca	FvH4_3g38710 FvH4_7g24490
malus_domestica	MD00G1166500.v1.1 MD01G1153100.v1.1 MD03G1068800.v1.1 MD07G1222100.v1.1 MD11G1073300.v1.1
prunus_persica	Prupe.2G250300_v2.0.a1 Prupe.6G056600_v2.0.a1
pyrus_communis	pycom01g17070 pycom03g05510
rosa_chinensis	RchiOBHm_Chr1g0370251 RchiOBHm_Chr5g0065501 RchiOBHm_Chr5g0069861
rosa_laevigata	RLG00000027065 RLG00000036103
rosa_multiflora	Rmu_co8321277.1_g000001 Rmu_sc0000738.1_g000002 Rmu_sc0026893.1_g000001 Rmu_sc0037931.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011190 Rroxscaffold_4G00286710 Rroxscaffold_4G00287300
rosa_rugosa	Rorug01G0355200 Rorug05G0400300
rosa_samantha	Rh1AG363800 Rh1BG326900 Rh1CG340200 Rh1DG357300 Rh5AG457400 Rh5BG476200 Rh5CG500000 Rh5DG488000
rosa_wichuraiana	Rw1G032010 Rw5G042700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	415
AccI	GTMKAC	1 cut(s)	437
AccII	CGCG	1 cut(s)	464
AclI	AACGTT	1 cut(s)	287
AclWI	GGATC	2 cut(s)	150, 273
AcoI	YGGCCR	1 cut(s)	470
AcsI	RAATTY	2 cut(s)	355, 508
AcuI	CTGAAG	1 cut(s)	371
AfaI	GTAC	1 cut(s)	495
AfiI	CCNNNNNNNGG	2 cut(s)	262, 263
AgsI	TTSAA	1 cut(s)	216
AhlI	ACTAGT	1 cut(s)	490
AluBI	AGCT	6 cut(s)	42, 117, 206, 372, 425, 450
AluI	AGCT	6 cut(s)	42, 117, 206, 372, 425, 450
AlwI	GGATC	2 cut(s)	150, 273
AoxI	GGCC	1 cut(s)	470
ApeKI	GCWGC	3 cut(s)	203, 247, 379
ApoI	RAATTY	2 cut(s)	355, 508
AsuC2I	CCSGG	2 cut(s)	223, 420
BalI	TGGCCA	1 cut(s)	472
BanI	GGYRCC	1 cut(s)	415
BanII	GRGCYC	1 cut(s)	270
BbvI	GCAGC	3 cut(s)	215, 234, 366
BccI	CCATC	2 cut(s)	451, 481
BcnI	CCSGG	2 cut(s)	223, 420
BcuI	ACTAGT	1 cut(s)	490
BfaI	CTAG	1 cut(s)	491
BisI	GCNGC	3 cut(s)	204, 248, 380
BlsI	GCNGC	3 cut(s)	205, 249, 381
Bme1390I	CCNGG	2 cut(s)	223, 420
BmiI	GGNNCC	1 cut(s)	417
BmrFI	CCNGG	2 cut(s)	223, 420
BplI	GAGNNNNNCTC	2 cut(s)	434, 466
BpuMI	CCSGG	2 cut(s)	223, 420
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 263
Bse1I	ACTGG	2 cut(s)	46, 83
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	2 cut(s)	262, 263
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	2 cut(s)	46, 83
BseRI	GAGGAG	1 cut(s)	497
BseXI	GCAGC	3 cut(s)	215, 234, 366
BsgI	GTGCAG	1 cut(s)	222
Bsh1236I	CGCG	1 cut(s)	464
BshFI	GGCC	1 cut(s)	472
BshNI	GGYRCC	1 cut(s)	415
BsiSI	CCGG	2 cut(s)	222, 419
BslI	CCNNNNNNNGG	2 cut(s)	262, 263
BsnI	GGCC	1 cut(s)	472
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	2 cut(s)	142, 278
Bsp68I	TCGCGA	1 cut(s)	464
BspANI	GGCC	1 cut(s)	472
BspCNI	CTCAG	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	464
BspLI	GGNNCC	1 cut(s)	417
BspPI	GGATC	2 cut(s)	150, 273
BspT107I	GGYRCC	1 cut(s)	415
BsrI	ACTGG	2 cut(s)	46, 83
BssMI	GATC	2 cut(s)	142, 278
BssNAI	GTATAC	1 cut(s)	438
Bst1107I	GTATAC	1 cut(s)	438
Bst4CI	ACNGT	2 cut(s)	174, 200
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	338, 448
BstDEI	CTNAG	2 cut(s)	230, 386
BstF5I	GGATG	1 cut(s)	97
BstFNI	CGCG	1 cut(s)	464
BstKTI	GATC	2 cut(s)	145, 281
BstMBI	GATC	2 cut(s)	142, 278
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	2 cut(s)	221, 418
BstUI	CGCG	1 cut(s)	464
BstV1I	GCAGC	3 cut(s)	215, 234, 366
BstX2I	RGATCY	1 cut(s)	278
BstYI	RGATCY	1 cut(s)	278
BstZ17I	GTATAC	1 cut(s)	438
BsuRI	GGCC	1 cut(s)	472
BtsCI	GGATG	1 cut(s)	97
BtsI	GCAGTG	1 cut(s)	59
BtsIMutI	CAGTG	3 cut(s)	59, 76, 170
BtuMI	TCGCGA	1 cut(s)	464
Cac8I	GCNNGC	2 cut(s)	338, 448
Csp6I	GTAC	1 cut(s)	494
CviAII	CATG	2 cut(s)	29, 337
CviJI	RGCY	9 cut(s)	42, 117, 154, 206, 268, 372, 425, 450, 472
CviKI_1	RGCY	9 cut(s)	42, 117, 154, 206, 268, 372, 425, 450, 472
CviQI	GTAC	1 cut(s)	494
DdeI	CTNAG	2 cut(s)	230, 386
DpnI	GATC	2 cut(s)	144, 280
DpnII	GATC	2 cut(s)	142, 278
EaeI	YGGCCR	1 cut(s)	470
Eco24I	GRGCYC	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	371
EcoT38I	GRGCYC	1 cut(s)	270
FaeI	CATG	2 cut(s)	32, 340
FaiI	YATR	8 cut(s)	19, 21, 30, 103, 189, 338, 433, 438
FatI	CATG	2 cut(s)	28, 336
FblI	GTMKAC	1 cut(s)	437
Fnu4HI	GCNGC	3 cut(s)	204, 248, 380
FokI	GGATG	1 cut(s)	84
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	3 cut(s)	204, 248, 380
FspBI	CTAG	1 cut(s)	491
GluI	GCNGC	3 cut(s)	204, 248, 380
HaeIII	GGCC	1 cut(s)	472
HapII	CCGG	2 cut(s)	222, 419
Hin1II	CATG	2 cut(s)	32, 340
HindIII	AAGCTT	1 cut(s)	115
HinfI	GANTC	1 cut(s)	226
HpaII	CCGG	2 cut(s)	222, 419
Hpy166II	GTNNAC	2 cut(s)	76, 438
Hpy188I	TCNGA	2 cut(s)	231, 456
Hpy188III	TCNNGA	2 cut(s)	463, 477
Hpy8I	GTNNAC	2 cut(s)	76, 438
HpyCH4III	ACNGT	2 cut(s)	174, 200
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	5 cut(s)	23, 52, 170, 203, 340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	2 cut(s)	230, 386
HpySE526I	ACGT	1 cut(s)	287
Hsp92II	CATG	2 cut(s)	32, 340
Kzo9I	GATC	2 cut(s)	142, 278
LmnI	GCTCC	2 cut(s)	303, 422
LpnPI	CCDG	7 cut(s)	46, 59, 64, 146, 235, 256, 432
Lsp1109I	GCAGC	3 cut(s)	215, 234, 366
MaeI	CTAG	1 cut(s)	491
MaeII	ACGT	1 cut(s)	287
MalI	GATC	2 cut(s)	144, 280
MboI	GATC	2 cut(s)	142, 278
MboII	GAAGA	2 cut(s)	83, 364
MflI	RGATCY	1 cut(s)	278
MhlI	GDGCHC	1 cut(s)	270
MlsI	TGGCCA	1 cut(s)	472
MluCI	AATT	2 cut(s)	355, 508
MluNI	TGGCCA	1 cut(s)	472
MlyI	GAGTC	1 cut(s)	235
MmeI	TCCRAC	2 cut(s)	91, 120
MnlI	CCTC	2 cut(s)	436, 475
Mox20I	TGGCCA	1 cut(s)	472
MscI	TGGCCA	1 cut(s)	472
Msp20I	TGGCCA	1 cut(s)	472
MspI	CCGG	2 cut(s)	222, 419
MspR9I	CCNGG	2 cut(s)	223, 420
MvnI	CGCG	1 cut(s)	464
MwoI	GCNNNNNNNGC	1 cut(s)	29
NciI	CCSGG	2 cut(s)	223, 420
NdeII	GATC	2 cut(s)	142, 278
NlaIII	CATG	2 cut(s)	32, 340
NlaIV	GGNNCC	1 cut(s)	417
NruI	TCGCGA	1 cut(s)	464
NspI	RCATGY	1 cut(s)	340
PaeI	GCATGC	1 cut(s)	340
PkrI	GCNGC	3 cut(s)	205, 249, 381
PleI	GAGTC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	234
Psp1406I	AACGTT	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	417
PsuI	RGATCY	1 cut(s)	278
RruI	TCGCGA	1 cut(s)	464
RsaI	GTAC	1 cut(s)	495
RsaNI	GTAC	1 cut(s)	494
SatI	GCNGC	3 cut(s)	204, 248, 380
Sau3AI	GATC	2 cut(s)	142, 278
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	2 cut(s)	223, 420
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	8 cut(s)	44, 90, 119, 208, 290, 374, 427, 452
SpeI	ACTAGT	1 cut(s)	490
SphI	GCATGC	1 cut(s)	340
Sse9I	AATT	2 cut(s)	355, 508
SspMI	CTAG	1 cut(s)	491
StyD4I	CCNGG	2 cut(s)	221, 418
TaaI	ACNGT	2 cut(s)	174, 200
TaiI	ACGT	1 cut(s)	290
TaqII	GACCGA	1 cut(s)	52
TasI	AATT	2 cut(s)	355, 508
TatI	WGTACW	1 cut(s)	493
TscAI	CASTG	3 cut(s)	59, 83, 177
TseI	GCWGC	3 cut(s)	203, 247, 379
TspDTI	ATGAA	2 cut(s)	83, 314
TspRI	CASTG	3 cut(s)	59, 83, 177
XapI	RAATTY	2 cut(s)	355, 508
XceI	RCATGY	1 cut(s)	340
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XmiI	GTMKAC	1 cut(s)	437
XspI	CTAG	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.