Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003366

Physical Location & Seq

Genomic Coordinates Reverse (-)

59811124 .. 59814981

Gene Structure 3858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG363800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2370 bp

ATGACGAAACTACCCTTCTCCGTTCTCATTACCATCCCCACCTTCATCTTCACCATTTTGTTCACCCTCCCATGTTCCCATGCACTCGGCTCCGGCGCCACTCTCGCCGTCAGCTACGCCACCGGCGTCGTCTGCGGCTTGGTCTCCGGCCAACCCACGCAGAGCATAGTCTGCTACCGGCGAGGCCAAACCATCTCCGTCGAGCCCAACGTCTCCTTCTCGTCAATCTCCGGCGGCCGGACCTCCCTCTGCGGCCTCCGGTCGGGCGGCTACGCCCTGCTCTGTTACGACAATCTAGTCTCCCAAGACTCCGTCTTTGATTCGAAAAGAGTCTACTTTAACGAAAGTGGTGAATTGGAAAACATAGCCGTCGGAGAAAGCCATATTTGCGCCACCGTGGTGGGTTCCGGCGCCGTGAAATGTTGGCGAGAAGACGACGGAACGTTTCAACTGCCATCTGGGTCGGACCAATTCGGGTCCGTCTCATCTGGGTCGGGCTTCTCCTGTGGAATTTCGAAGAACGACTCAAGGGTCCGGTGCTGGGGGACTAGAACTTCCATGGCGGCCGAGATTGAAAATGGGTTTGGAGAAACGGCCATGGCGAGTATTGAAGCAGGTGCTTATCACGTGTGTGGAGTCAATGTTACTGGGTCAATAATATGCAGAGGCAACAACGACTCTGGTCAATTGAATGCACCGCCGGGAAAGTTTTCCGGTCTAGCTCTCGGAGCTGAACACAGCTGTGCGATTAGAGATCCAAACCGGTCTGTGATTTGTTGGGGCGGTGGAGGCCAGTTTGGGTCTAATGTGACTTCAGCGACGTCGTTTGAGGTGATCGTTTCCGGGTCTAATTTCACTTGTGGATTAACCACAAGCAACTTTTCGATTATATGTTGGGGTCCTGGTTGGCCTAGTTTAGAGGTTGAAGGTGAGCTTGGGTTGCCGGAGATTCTTCCTGGTCGTTGTGTACAGGCCTCTTGTAGTGAATGTGGTATTTATCCTCAATCTCAAAAGCTCTGTTACGACTCTGGGAACATTTGCAGTCCTTGTTTGGTTTTGGTTCCTACATTACCACCGTCACCGTCGATTTCACCGCCACCGGAATCTCCATCCCGGGCTTTGAAAACGGGGTTGTTAGTGTTCTGCATTGTGGGTTCTATAGGAGGGTTTTCGGGGATTTGTAGTGTGATTTATTGTTTGTGGATGGGTGGTTGTTTTGGGCAAAAGAAAGTTCATAATTCAGTTCAGCCTACAATCACCAGAGCCGGCAGTTCCAACCACGGGAACACATCAAATAACAGCCCTCCTTCGAGATCAGCCACCATAAGGCGGCAGAGCTCGAGGATCATGAGGCGGCAGAGGAGTGGGCCTTCGTCGAAGCACCCAGATAGGGCTGAGGAGTTCTCACTGGCTGAGCTTGCAGCAGCTACAAATGGTTTTGCATTGGAGAACAAGATTGGTGCAGGGAGCTTTGGGGTGGTGTACAGAGGGAAATTGGATGACGGGCGCGAAGTTGCTATCAAGAGAGGAGAAACAGCAACCAAGGTGAAGAAGTACCAAGAGAAGGATACTGCTTTCGATTCAGAGTTGTCATTCTTGTCGAGGCTTCATCACAAGCATTTAGTTAGGCTTGTCGGGTATTGTGAGGAGAAGGAGGAGAGGCTGTTGGTTTATGAGTACATGAAGAATGGTGCGCTCCATGATCATTTACATGACAAGAACAATGTCGAGAAGAGTAGTAGTTTGATTAATTCTTGGAAAATGAGGATCAAGGTGGCTTTAGATGCTGCCAGAGGCATTGAGTATCTACACAACTATGCAGTCCCTCCTATAATTCACAGAGATATTAAGTCCTCTAACATTCTGATAGACGGAAATTGGACTGGAAGAGTATCTGATTTTGGATTATCACTATTGGGTCCGGAAAATGACAGCGACTATAGGCCAATGAAGGCAGCTGGAACCGTTGGCTATATTGATCCAGAATACTATGGTTTAAACTTATTAACAGCAAAGAGTGATGTGTATGGGCTTGGTGTGGTGTTGTTGGAGCTTCTGACAGGAAGAAGAGCAATCTTCAGGAACAGTGAAGACGGAGGGACACCTACCAGTGTTGTGGACTTCACTGTGCCGCTGATCATGGCCGGAGAGTTAGATAAGGTTTTGGACCCAAGGGTTGGACCTCCGGAAATCAATGAAGCAGAGGCGGTTGAGTTGGTGGCGTATACTGCAATGCATTGTGTGAATTTGGAAGGTAAAGATAGACCAACCATGACTGACATTGTGGCCAATTTGGAGCGAGCATTGAGTCTCTGTGAGGAAAGCCCCGGTGGCAGCATATCTAGCGGCTCAATCATCTCTGCCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0042802 GO:0042803 GO:0046983

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr RCC1_2

Protein Analysis

789

Amino Acids

84.22

Weight (kDa)

6.03

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	481 - 762	9.3e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	482 - 764	1.7e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55950
fragaria_vesca	FvH4_3g38710 FvH4_7g24490
malus_domestica	MD00G1166500.v1.1 MD01G1153100.v1.1 MD03G1068800.v1.1 MD07G1222100.v1.1 MD11G1073300.v1.1
prunus_persica	Prupe.2G250300_v2.0.a1 Prupe.6G056600_v2.0.a1
pyrus_communis	pycom01g17070 pycom03g05510
rosa_chinensis	RchiOBHm_Chr1g0370251 RchiOBHm_Chr5g0065501 RchiOBHm_Chr5g0069861
rosa_laevigata	RLG00000027065 RLG00000036103
rosa_multiflora	Rmu_co8321277.1_g000001 Rmu_sc0000738.1_g000002 Rmu_sc0026893.1_g000001 Rmu_sc0037931.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011190 Rroxscaffold_4G00286710 Rroxscaffold_4G00287300
rosa_rugosa	Rorug01G0355200 Rorug05G0400300
rosa_samantha	Rh1AG363800 Rh1BG326900 Rh1CG340200 Rh1DG357300 Rh5AG457400 Rh5BG476200 Rh5CG500000 Rh5DG488000
rosa_wichuraiana	Rw1G032010 Rw5G042700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	605
AasI	GACNNNNNNGTC	2 cut(s)	296, 530
AatII	GACGTC	1 cut(s)	824
Acc36I	ACCTGC	1 cut(s)	605
AccB1I	GGYRCC	2 cut(s)	95, 410
AccB7I	CCANNNNNTGG	1 cut(s)	2177
AccI	GTMKAC	2 cut(s)	333, 2225
AccII	CGCG	1 cut(s)	1509
AccIII	TCCGGA	2 cut(s)	1921, 2185
AclI	AACGTT	1 cut(s)	443
AclWI	GGATC	4 cut(s)	749, 1352, 1775, 1973
AcoI	YGGCCR	6 cut(s)	148, 235, 564, 594, 2142, 2286
AcsI	RAATTY	2 cut(s)	510, 2245
AcuI	CTGAAG	2 cut(s)	798, 2062
AcvI	CACGTG	1 cut(s)	628
AcyI	GRCGYC	4 cut(s)	96, 126, 411, 821
AfaI	GTAC	4 cut(s)	969, 1484, 1556, 1679
AfiI	CCNNNNNNNGG	9 cut(s)	237, 262, 541, 1281, 1326, 1329, 1390, 1564, 2177
AflIII	ACRYGT	1 cut(s)	627
AgeI	ACCGGT	1 cut(s)	762
AgsI	TTSAA	6 cut(s)	449, 575, 611, 691, 926, 1123
AjnI	CCWGG	2 cut(s)	901, 955
AjuI	GAANNNNNNNTTGG	6 cut(s)	200, 232, 567, 599, 918, 950
AleI	CACNNNNGTG	3 cut(s)	398, 630, 741
Alw21I	GWGCWC	1 cut(s)	1340
Alw26I	GTCTC	5 cut(s)	148, 217, 304, 487, 2315
AlwI	GGATC	4 cut(s)	749, 1352, 1775, 1973
Ama87I	CYCGRG	2 cut(s)	1113, 1339
Aor13HI	TCCGGA	2 cut(s)	1921, 2185
ApeKI	GCWGC	5 cut(s)	1421, 1424, 1787, 1955, 2334
ApoI	RAATTY	2 cut(s)	510, 2245
ArsI	GACNNNNNNTTYG	2 cut(s)	299, 331
AseI	ATTAAT	1 cut(s)	1749
AsiGI	ACCGGT	1 cut(s)	762
Asp700I	GAANNNNTTC	1 cut(s)	709
AspLEI	GCGC	5 cut(s)	98, 392, 413, 1509, 1696
AspS9I	GGNCC	9 cut(s)	240, 466, 477, 532, 899, 1367, 1919, 2167, 2180
AsuC2I	CCSGG	5 cut(s)	702, 844, 1114, 1115, 2328
AsuHPI	GGTGA	9 cut(s)	43, 55, 362, 844, 941, 1071, 1083, 1249, 1558
AsuII	TTCGAA	2 cut(s)	323, 515
AvaI	CYCGRG	2 cut(s)	1113, 1339
AvaII	GGWCC	8 cut(s)	240, 466, 477, 532, 899, 1919, 2167, 2180
BalI	TGGCCA	1 cut(s)	2288
BanI	GGYRCC	2 cut(s)	95, 410
BanII	GRGCYC	2 cut(s)	207, 1340
BbrPI	CACGTG	1 cut(s)	628
BbsI	GAAGAC	2 cut(s)	438, 2097
Bbv12I	GWGCWC	1 cut(s)	1340
BbvCI	CCTCAGC	1 cut(s)	1395
BbvI	GCAGC	5 cut(s)	1433, 1436, 1774, 1967, 2346
BccI	CCATC	5 cut(s)	41, 200, 463, 1117, 1198
BceAI	ACGGC	4 cut(s)	92, 353, 398, 609
BciT130I	CCWGG	2 cut(s)	903, 957
BciVI	GTATCC	1 cut(s)	1561
BclI	TGATCA	2 cut(s)	1702, 2136
BcnI	CCSGG	5 cut(s)	702, 844, 1114, 1115, 2328
BcoDI	GTCTC	5 cut(s)	148, 217, 304, 487, 2315
BfaI	CTAG	5 cut(s)	296, 549, 719, 912, 2343
BfmI	CTRYAG	2 cut(s)	1158, 1939
BfoI	RGCGCY	2 cut(s)	99, 414
BfuAI	ACCTGC	1 cut(s)	605
BfuI	GTATCC	1 cut(s)	1561
BglI	GCCNNNNNGGC	1 cut(s)	2331
BlpI	GCTNAGC	1 cut(s)	1413
Bme1390I	CCNGG	7 cut(s)	702, 844, 903, 957, 1114, 1115, 2328
Bme18I	GGWCC	8 cut(s)	240, 466, 477, 532, 899, 1919, 2167, 2180
BmeT110I	CYCGRG	2 cut(s)	1113, 1339
BmgT120I	GGNCC	9 cut(s)	240, 466, 477, 532, 899, 1367, 1919, 2167, 2180
BmrFI	CCNGG	7 cut(s)	702, 844, 903, 957, 1114, 1115, 2328
BmrI	ACTGGG	1 cut(s)	657
BmsI	GCATC	1 cut(s)	1774
BmuI	ACTGGG	1 cut(s)	657
BoxI	GACNNNNGTC	1 cut(s)	681
BpiI	GAAGAC	2 cut(s)	438, 2097
BplI	GAGNNNNNCTC	2 cut(s)	1388, 1420
Bpu10I	CCTNAGC	1 cut(s)	1395
Bpu1102I	GCTNAGC	1 cut(s)	1413
Bpu14I	TTCGAA	2 cut(s)	323, 515
BpuEI	CTTGAG	1 cut(s)	511
BpuMI	CCSGG	5 cut(s)	702, 844, 1114, 1115, 2328
BsaAI	YACGTR	1 cut(s)	628
BsaHI	GRCGYC	4 cut(s)	96, 126, 411, 821
BsaI	GGTCTC	1 cut(s)	148
BsaJI	CCNNGG	8 cut(s)	396, 558, 597, 1113, 1279, 1542, 2171, 2326
BsaWI	WCCGGW	7 cut(s)	258, 534, 713, 762, 1099, 1921, 2185
BsaXI	ACNNNNNCTCC	4 cut(s)	627, 657, 1649, 1679
Bsc4I	CCNNNNNNNGG	9 cut(s)	237, 262, 541, 1281, 1326, 1329, 1390, 1564, 2177
Bse118I	RCCGGY	4 cut(s)	122, 177, 762, 1265
Bse1I	ACTGG	5 cut(s)	652, 793, 1413, 1888, 2109
Bse3DI	GCAATG	1 cut(s)	2238
BseAI	TCCGGA	2 cut(s)	1921, 2185
BseBI	CCWGG	2 cut(s)	903, 957
BseDI	CCNNGG	8 cut(s)	396, 558, 597, 1113, 1279, 1542, 2171, 2326
BseGI	GGATG	4 cut(s)	33, 1109, 1209, 1504
BseLI	CCNNNNNNNGG	9 cut(s)	237, 262, 541, 1281, 1326, 1329, 1390, 1564, 2177
BseMI	GCAATG	1 cut(s)	2238
BseMII	CTCAG	2 cut(s)	1386, 1404
BseNI	ACTGG	5 cut(s)	652, 793, 1413, 1888, 2109
BseRI	GAGGAG	5 cut(s)	1375, 1412, 1542, 1661, 1670
BseX3I	CGGCCG	2 cut(s)	235, 564
BseXI	GCAGC	5 cut(s)	1433, 1436, 1774, 1967, 2346
BseYI	CCCAGC	1 cut(s)	540
BsgI	GTGCAG	1 cut(s)	1482
Bsh1236I	CGCG	1 cut(s)	1509
Bsh1285I	CGRYCG	3 cut(s)	238, 263, 567
BshNI	GGYRCC	2 cut(s)	95, 410
BshTI	ACCGGT	1 cut(s)	762
BsiEI	CGRYCG	3 cut(s)	238, 263, 567
BsiHKAI	GWGCWC	1 cut(s)	1340
BsiHKCI	CYCGRG	2 cut(s)	1113, 1339
BslFI	GGGAC	3 cut(s)	559, 1808, 2113
BslI	CCNNNNNNNGG	9 cut(s)	237, 262, 541, 1281, 1326, 1329, 1390, 1564, 2177
BsmAI	GTCTC	5 cut(s)	148, 217, 304, 487, 2315
BsmBI	CGTCTC	2 cut(s)	217, 487
BsmFI	GGGAC	3 cut(s)	559, 1808, 2113
BsmI	GAATGC	1 cut(s)	697
Bso31I	GGTCTC	1 cut(s)	148
BsoBI	CYCGRG	2 cut(s)	1113, 1339
Bsp119I	TTCGAA	2 cut(s)	323, 515
Bsp1286I	GDGCHC	2 cut(s)	207, 1340
Bsp13I	TCCGGA	2 cut(s)	1921, 2185
Bsp1407I	TGTACA	2 cut(s)	967, 1482
Bsp143I	GATC	8 cut(s)	754, 834, 1313, 1344, 1702, 1767, 1978, 2136
Bsp1720I	GCTNAGC	1 cut(s)	1413
Bsp19I	CCATGG	2 cut(s)	558, 597
BspCNI	CTCAG	2 cut(s)	1387, 1405
BspEI	TCCGGA	2 cut(s)	1921, 2185
BspFNI	CGCG	1 cut(s)	1509
BspHI	TCATGA	1 cut(s)	1347
BspMI	ACCTGC	1 cut(s)	605
BspPI	GGATC	4 cut(s)	749, 1352, 1775, 1973
BspQI	GCTCTTC	1 cut(s)	2062
BspT104I	TTCGAA	2 cut(s)	323, 515
BspT107I	GGYRCC	2 cut(s)	95, 410
BspTNI	GGTCTC	1 cut(s)	148
BsrDI	GCAATG	1 cut(s)	2238
BsrFI	RCCGGY	4 cut(s)	122, 177, 762, 1265
BsrGI	TGTACA	2 cut(s)	967, 1482
BsrI	ACTGG	5 cut(s)	652, 793, 1413, 1888, 2109
BssAI	RCCGGY	4 cut(s)	122, 177, 762, 1265
BssECI	CCNNGG	8 cut(s)	396, 558, 597, 1113, 1279, 1542, 2171, 2326
BssMI	GATC	8 cut(s)	754, 834, 1313, 1344, 1702, 1767, 1978, 2136
BssNAI	GTATAC	1 cut(s)	2226
BssNI	GRCGYC	4 cut(s)	96, 126, 411, 821
BssT1I	CCWWGG	4 cut(s)	558, 597, 1542, 2171
Bst1107I	GTATAC	1 cut(s)	2226
Bst2UI	CCWGG	2 cut(s)	903, 957
Bst4CI	ACNGT	6 cut(s)	397, 1077, 1083, 1966, 2087, 2128
Bst6I	CTCTTC	3 cut(s)	1727, 1882, 2062
BstACI	GRCGYC	4 cut(s)	96, 126, 411, 821
BstAPI	GCANNNNNTGC	1 cut(s)	171
BstAUI	TGTACA	2 cut(s)	967, 1482
BstBAI	YACGTR	1 cut(s)	628
BstBI	TTCGAA	2 cut(s)	323, 515
BstC8I	GCNNGC	3 cut(s)	1267, 1419, 2301
BstDEI	CTNAG	2 cut(s)	1395, 1413
BstDSI	CCRYGG	4 cut(s)	396, 558, 597, 1279
BstF5I	GGATG	4 cut(s)	33, 1109, 1209, 1504
BstFNI	CGCG	1 cut(s)	1509
BstH2I	RGCGCY	2 cut(s)	99, 414
BstHHI	GCGC	5 cut(s)	98, 392, 413, 1509, 1696
BstKTI	GATC	8 cut(s)	757, 837, 1316, 1347, 1705, 1770, 1981, 2139
BstMAI	GTCTC	5 cut(s)	148, 217, 304, 487, 2315
BstMBI	GATC	8 cut(s)	754, 834, 1313, 1344, 1702, 1767, 1978, 2136
BstMCI	CGRYCG	3 cut(s)	238, 263, 567
BstNI	CCWGG	2 cut(s)	903, 957
BstPAI	GACNNNNGTC	1 cut(s)	681
BstSCI	CCNGG	7 cut(s)	700, 842, 901, 955, 1112, 1113, 2326
BstSFI	CTRYAG	2 cut(s)	1158, 1939
BstUI	CGCG	1 cut(s)	1509
BstV1I	GCAGC	5 cut(s)	1433, 1436, 1774, 1967, 2346
BstV2I	GAAGAC	2 cut(s)	438, 2097
BstX2I	RGATCY	1 cut(s)	754
BstXI	CCANNNNNNTGG	2 cut(s)	400, 2116
BstYI	RGATCY	1 cut(s)	754
BstZ17I	GTATAC	1 cut(s)	2226
BstZI	CGGCCG	2 cut(s)	235, 564
BsuI	GTATCC	1 cut(s)	1561
BtgI	CCRYGG	4 cut(s)	396, 558, 597, 1279
BtsCI	GGATG	4 cut(s)	33, 1109, 1209, 1504
BtsIMutI	CAGTG	4 cut(s)	1406, 2092, 2116, 2124
BveI	ACCTGC	1 cut(s)	605
Cac8I	GCNNGC	3 cut(s)	1267, 1419, 2301
CciI	TCATGA	1 cut(s)	1347
CfoI	GCGC	5 cut(s)	98, 392, 413, 1509, 1696
Cfr10I	RCCGGY	4 cut(s)	122, 177, 762, 1265
Cfr13I	GGNCC	9 cut(s)	240, 466, 477, 532, 899, 1367, 1919, 2167, 2180
Cfr9I	CCCGGG	1 cut(s)	1113
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	4 cut(s)	968, 1483, 1555, 1678
CspAI	ACCGGT	1 cut(s)	762
CviQI	GTAC	4 cut(s)	968, 1483, 1555, 1678
DdeI	CTNAG	2 cut(s)	1395, 1413
DinI	GGCGCC	2 cut(s)	97, 412
DpnI	GATC	8 cut(s)	756, 836, 1315, 1346, 1704, 1769, 1980, 2138
DpnII	GATC	8 cut(s)	754, 834, 1313, 1344, 1702, 1767, 1978, 2136
DraI	TTTAAA	1 cut(s)	1998
DrdI	GACNNNNNNGTC	2 cut(s)	296, 530
DseDI	GACNNNNNNGTC	2 cut(s)	296, 530
EaeI	YGGCCR	6 cut(s)	148, 235, 564, 594, 2142, 2286
EagI	CGGCCG	2 cut(s)	235, 564
Eam1104I	CTCTTC	3 cut(s)	1727, 1882, 2062
EarI	CTCTTC	3 cut(s)	1727, 1882, 2062
Ecl136II	GAGCTC	1 cut(s)	1338
EclXI	CGGCCG	2 cut(s)	235, 564
Eco130I	CCWWGG	4 cut(s)	558, 597, 1542, 2171
Eco147I	AGGCCT	1 cut(s)	974
Eco24I	GRGCYC	2 cut(s)	207, 1340
Eco31I	GGTCTC	1 cut(s)	148
Eco47I	GGWCC	8 cut(s)	240, 466, 477, 532, 899, 1919, 2167, 2180
Eco52I	CGGCCG	2 cut(s)	235, 564
Eco53kI	GAGCTC	1 cut(s)	1338
Eco57I	CTGAAG	2 cut(s)	798, 2062
Eco72I	CACGTG	1 cut(s)	628
Eco88I	CYCGRG	2 cut(s)	1113, 1339
EcoICRI	GAGCTC	1 cut(s)	1338
EcoO109I	RGGNCCY	1 cut(s)	899
EcoRII	CCWGG	2 cut(s)	901, 955
EcoT14I	CCWWGG	4 cut(s)	558, 597, 1542, 2171
EcoT22I	ATGCAT	1 cut(s)	2238
EcoT38I	GRGCYC	2 cut(s)	207, 1340
EgeI	GGCGCC	2 cut(s)	97, 412
EheI	GGCGCC	2 cut(s)	97, 412
ErhI	CCWWGG	4 cut(s)	558, 597, 1542, 2171
Esp3I	CGTCTC	2 cut(s)	217, 487
FalI	AAGNNNNNCTT	2 cut(s)	918, 950
FaqI	GGGAC	3 cut(s)	559, 1808, 2113
FbaI	TGATCA	2 cut(s)	1702, 2136
FblI	GTMKAC	2 cut(s)	333, 2225
FokI	GGATG	4 cut(s)	20, 1096, 1216, 1511
FriOI	GRGCYC	2 cut(s)	207, 1340
FspBI	CTAG	5 cut(s)	296, 549, 719, 912, 2343
GlaI	GCGC	5 cut(s)	97, 391, 412, 1508, 1695
GsaI	CCCAGC	1 cut(s)	544
HaeII	RGCGCY	2 cut(s)	99, 414
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	5 cut(s)	98, 392, 413, 1509, 1696
Hin1I	GRCGYC	4 cut(s)	96, 126, 411, 821
Hin6I	GCGC	5 cut(s)	96, 390, 411, 1507, 1694
HinP1I	GCGC	5 cut(s)	96, 390, 411, 1507, 1694
HphI	GGTGA	9 cut(s)	43, 55, 362, 844, 941, 1071, 1083, 1249, 1558
Hpy166II	GTNNAC	6 cut(s)	63, 334, 968, 1483, 2119, 2226
Hpy188I	TCNGA	7 cut(s)	374, 466, 728, 1585, 1866, 1897, 2058
Hpy188III	TCNNGA	8 cut(s)	1311, 1348, 1522, 1729, 1922, 1982, 2080, 2186
Hpy8I	GTNNAC	6 cut(s)	63, 334, 968, 1483, 2119, 2226
Hpy99I	CGWCG	8 cut(s)	131, 203, 374, 440, 823, 826, 1087, 1378
HpyCH4III	ACNGT	6 cut(s)	397, 1077, 1083, 1966, 2087, 2128
HpyCH4IV	ACGT	4 cut(s)	210, 443, 627, 821
HpyF3I	CTNAG	2 cut(s)	1395, 1413
HpySE526I	ACGT	4 cut(s)	210, 443, 627, 821
Hsp92I	GRCGYC	4 cut(s)	96, 126, 411, 821
HspAI	GCGC	5 cut(s)	96, 390, 411, 1507, 1694
KasI	GGCGCC	2 cut(s)	95, 410
Kpn2I	TCCGGA	2 cut(s)	1921, 2185
KroI	GCCGGC	1 cut(s)	1265
KroNI	GCCGGC	1 cut(s)	1267
Ksp22I	TGATCA	2 cut(s)	1702, 2136
Kzo9I	GATC	8 cut(s)	754, 834, 1313, 1344, 1702, 1767, 1978, 2136
LguI	GCTCTTC	1 cut(s)	2062
LmnI	GCTCC	6 cut(s)	95, 728, 1467, 1701, 2050, 2296
Lsp1109I	GCAGC	5 cut(s)	1433, 1436, 1774, 1967, 2346
LweI	GCATC	1 cut(s)	1774
MaeI	CTAG	5 cut(s)	296, 549, 719, 912, 2343
MaeII	ACGT	4 cut(s)	210, 443, 627, 821
MaeIII	GTNAC	5 cut(s)	284, 643, 808, 1019, 1077
MalI	GATC	8 cut(s)	756, 836, 1315, 1346, 1704, 1769, 1980, 2138
MboI	GATC	8 cut(s)	754, 834, 1313, 1344, 1702, 1767, 1978, 2136
MfeI	CAATTG	1 cut(s)	686
MflI	RGATCY	1 cut(s)	754
MhlI	GDGCHC	2 cut(s)	207, 1340
MlsI	TGGCCA	1 cut(s)	2288
MluNI	TGGCCA	1 cut(s)	2288
Mly113I	GGCGCC	2 cut(s)	96, 411
MlyI	GAGTC	7 cut(s)	302, 339, 518, 645, 671, 1019, 2317
MmeI	TCCRAC	5 cut(s)	352, 444, 1299, 2028, 2158
Mox20I	TGGCCA	1 cut(s)	2288
Mph1103I	ATGCAT	1 cut(s)	2238
MroI	TCCGGA	2 cut(s)	1921, 2185
MroNI	GCCGGC	1 cut(s)	1265
MroXI	GAANNNNTTC	1 cut(s)	709
MscI	TGGCCA	1 cut(s)	2288
MseI	TTAA	6 cut(s)	339, 866, 1749, 1848, 1997, 2006
MslI	CAYNNNNRTG	5 cut(s)	398, 630, 741, 1710, 1815
Msp20I	TGGCCA	1 cut(s)	2288
MspA1I	CMGCKG	3 cut(s)	741, 1958, 2134
MspR9I	CCNGG	7 cut(s)	702, 844, 903, 957, 1114, 1115, 2328
MssI	GTTTAAAC	1 cut(s)	1998
MunI	CAATTG	1 cut(s)	686
Mva1269I	GAATGC	1 cut(s)	697
MvaI	CCWGG	2 cut(s)	903, 957
MvnI	CGCG	1 cut(s)	1509
NaeI	GCCGGC	1 cut(s)	1267
NarI	GGCGCC	2 cut(s)	96, 411
NciI	CCSGG	5 cut(s)	702, 844, 1114, 1115, 2328
NcoI	CCATGG	2 cut(s)	558, 597
NdeII	GATC	8 cut(s)	754, 834, 1313, 1344, 1702, 1767, 1978, 2136
NgoMIV	GCCGGC	1 cut(s)	1265
NmeAIII	GCCGAG	2 cut(s)	66, 592
NmuCI	GTSAC	2 cut(s)	808, 1077
NsiI	ATGCAT	1 cut(s)	2238
NspV	TTCGAA	2 cut(s)	323, 515
OliI	CACNNNNGTG	3 cut(s)	398, 630, 741
PaeR7I	CTCGAG	1 cut(s)	1339
PagI	TCATGA	1 cut(s)	1347
PaqCI	CACCTGC	1 cut(s)	605
PceI	AGGCCT	1 cut(s)	974
PciSI	GCTCTTC	1 cut(s)	2062
PcsI	WCGNNNNNNNCGW	3 cut(s)	123, 207, 599
PctI	GAATGC	1 cut(s)	697
PdiI	GCCGGC	1 cut(s)	1267
PdmI	GAANNNNTTC	1 cut(s)	709
PfeI	GAWTC	4 cut(s)	320, 949, 1103, 1580
PflFI	GACNNNGTC	1 cut(s)	311
PflMI	CCANNNNNTGG	1 cut(s)	2177
PinAI	ACCGGT	1 cut(s)	762
PleI	GAGTC	7 cut(s)	302, 338, 518, 644, 671, 1019, 2316
PluTI	GGCGCC	2 cut(s)	99, 414
PmaCI	CACGTG	1 cut(s)	628
PmeI	GTTTAAAC	1 cut(s)	1998
PmlI	CACGTG	1 cut(s)	628
PpsI	GAGTC	7 cut(s)	302, 338, 518, 644, 671, 1019, 2316
Ppu21I	YACGTR	1 cut(s)	628
PpuMI	RGGWCCY	1 cut(s)	899
PshAI	GACNNNNGTC	1 cut(s)	681
PshBI	ATTAAT	1 cut(s)	1749
Psp124BI	GAGCTC	1 cut(s)	1340
Psp1406I	AACGTT	1 cut(s)	443
Psp5II	RGGWCCY	1 cut(s)	899
Psp6I	CCWGG	2 cut(s)	901, 955
PspCI	CACGTG	1 cut(s)	628
PspFI	CCCAGC	1 cut(s)	540
PspGI	CCWGG	2 cut(s)	901, 955
PspPI	GGNCC	9 cut(s)	240, 466, 477, 532, 899, 1367, 1919, 2167, 2180
PspPPI	RGGWCCY	1 cut(s)	899
PspXI	VCTCGAGB	1 cut(s)	1339
PsuI	RGATCY	1 cut(s)	754
PsyI	GACNNNGTC	1 cut(s)	311
PvuII	CAGCTG	2 cut(s)	741, 1958
RsaI	GTAC	4 cut(s)	969, 1484, 1556, 1679
RsaNI	GTAC	4 cut(s)	968, 1483, 1555, 1678
RseI	CAYNNNNRTG	5 cut(s)	398, 630, 741, 1710, 1815
SacI	GAGCTC	1 cut(s)	1340
SapI	GCTCTTC	1 cut(s)	2062
SaqAI	TTAA	6 cut(s)	339, 866, 1749, 1848, 1997, 2006
Sau3AI	GATC	8 cut(s)	754, 834, 1313, 1344, 1702, 1767, 1978, 2136
Sau96I	GGNCC	9 cut(s)	240, 466, 477, 532, 899, 1367, 1919, 2167, 2180
SchI	GAGTC	7 cut(s)	302, 339, 518, 645, 671, 1019, 2317
ScrFI	CCNGG	7 cut(s)	702, 844, 903, 957, 1114, 1115, 2328
SduI	GDGCHC	2 cut(s)	207, 1340
SfaNI	GCATC	1 cut(s)	1774
SfcI	CTRYAG	2 cut(s)	1158, 1939
SfoI	GGCGCC	2 cut(s)	97, 412
Sfr274I	CTCGAG	1 cut(s)	1339
SfuI	TTCGAA	2 cut(s)	323, 515
SgrAI	CRCCGGYG	1 cut(s)	122
SinI	GGWCC	8 cut(s)	240, 466, 477, 532, 899, 1919, 2167, 2180
SlaI	CTCGAG	1 cut(s)	1339
SmaI	CCCGGG	1 cut(s)	1115
SmiMI	CAYNNNNRTG	5 cut(s)	398, 630, 741, 1710, 1815
SmlI	CTYRAG	2 cut(s)	526, 1339
SmoI	CTYRAG	2 cut(s)	526, 1339
SseBI	AGGCCT	1 cut(s)	974
SspDI	GGCGCC	2 cut(s)	95, 410
SspMI	CTAG	5 cut(s)	296, 549, 719, 912, 2343
SstI	GAGCTC	1 cut(s)	1340
StuI	AGGCCT	1 cut(s)	974
StyD4I	CCNGG	7 cut(s)	700, 842, 901, 955, 1112, 1113, 2326
StyI	CCWWGG	4 cut(s)	558, 597, 1542, 2171
TaaI	ACNGT	6 cut(s)	397, 1077, 1083, 1966, 2087, 2128
TaiI	ACGT	4 cut(s)	213, 446, 630, 824
TatI	WGTACW	3 cut(s)	967, 1482, 1677
TauI	GCSGC	9 cut(s)	138, 237, 255, 270, 566, 1333, 1357, 2134, 2349
TfiI	GAWTC	4 cut(s)	320, 949, 1103, 1580
Tru1I	TTAA	6 cut(s)	339, 866, 1749, 1848, 1997, 2006
Tru9I	TTAA	6 cut(s)	339, 866, 1749, 1848, 1997, 2006
TscAI	CASTG	4 cut(s)	1413, 2092, 2116, 2131
TseFI	GTSAC	2 cut(s)	808, 1077
TseI	GCWGC	5 cut(s)	1421, 1424, 1787, 1955, 2334
Tsp45I	GTSAC	2 cut(s)	808, 1077
TspDTI	ATGAA	6 cut(s)	34, 1223, 1598, 1697, 1964, 2211
TspGWI	ACGGA	7 cut(s)	10, 187, 301, 453, 469, 1887, 2109
TspMI	CCCGGG	1 cut(s)	1113
TspRI	CASTG	4 cut(s)	1413, 2092, 2116, 2131
Tth111I	GACNNNGTC	1 cut(s)	311
Van91I	CCANNNNNTGG	1 cut(s)	2177
VpaK11BI	GGWCC	8 cut(s)	240, 466, 477, 532, 899, 1919, 2167, 2180
VspI	ATTAAT	1 cut(s)	1749
XapI	RAATTY	2 cut(s)	510, 2245
XhoI	CTCGAG	1 cut(s)	1339
XmaI	CCCGGG	1 cut(s)	1113
XmiI	GTMKAC	2 cut(s)	333, 2225
XmnI	GAANNNNTTC	1 cut(s)	709
XspI	CTAG	5 cut(s)	296, 549, 719, 912, 2343
ZraI	GACGTC	1 cut(s)	822
Zsp2I	ATGCAT	1 cut(s)	2238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.