Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8321277.1

Orthogroup ID

OG0003366

Physical Location & Seq

Genomic Coordinates Reverse (-)

58 .. 948

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8321277.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

gtatacagaggcaagctctccgatggtcgcgaagtggccatcaagagaggagatactagtacaaaaaccaagaaattccaggagaaagaaagcgcgtttgattctgaagtagcattgctgtctcggcttcaccacaagcatttggtgaagctagtgggatcgtgtgaagataaagacgagaggcttttggtttacgagtacatgagtaatggctcgcttcatgatcacttgcacaacaagaaaaatgtggagaaaagtagcagcattgtgaactcttggaaaatgaggatgagaatagcattggatgctgcaagggggattgagtatcttcacacttacgcagtgccgccaataattcatcgagacatcaagtcctctaacattctcttggatgcagacatgactgcaagagtatctgatttcgggctgtcattgttggggccgacatctgatcaagaggtaatgtcatcaaaggccgttgggacagtagggtacattgatccagagtactttgtactaaacgttttgactgcaaagagcgatgtctatggcttcggagtggtgttgttggagcttttgacagggaagagggctgttttcagtgacagtgaagaaggaacaggtccaattggtgttgtggaatatgcagggccaaggataatggcaggagatctgcaaagcttgttggataaaaggcttgggcagccggagccaaatgaggccgaagcagttcagctagtagctaatactgctatgcattgtctgagtttagaggggaaagaaaggcctagtatgactgacattgttgccaatttggagagagcaattgccctttgtgaacaggaacctgttagcttctctacctccgcaatttcccttccttcactgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0042802 GO:0042803 GO:0046983

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase RCC1_2

Protein Analysis

296

Amino Acids

32.52

Weight (kDa)

5.76

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55950
fragaria_vesca	FvH4_3g38710 FvH4_7g24490
malus_domestica	MD00G1166500.v1.1 MD01G1153100.v1.1 MD03G1068800.v1.1 MD07G1222100.v1.1 MD11G1073300.v1.1
prunus_persica	Prupe.2G250300_v2.0.a1 Prupe.6G056600_v2.0.a1
pyrus_communis	pycom01g17070 pycom03g05510
rosa_chinensis	RchiOBHm_Chr1g0370251 RchiOBHm_Chr5g0065501 RchiOBHm_Chr5g0069861
rosa_laevigata	RLG00000027065 RLG00000036103
rosa_multiflora	Rmu_co8321277.1_g000001 Rmu_sc0000738.1_g000002 Rmu_sc0026893.1_g000001 Rmu_sc0037931.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011190 Rroxscaffold_4G00286710 Rroxscaffold_4G00287300
rosa_rugosa	Rorug01G0355200 Rorug05G0400300
rosa_samantha	Rh1AG363800 Rh1BG326900 Rh1CG340200 Rh1DG357300 Rh5AG457400 Rh5BG476200 Rh5CG500000 Rh5DG488000
rosa_wichuraiana	Rw1G032010 Rw5G042700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	3
AccII	CGCG	2 cut(s)	30, 95
AciI	CCGC	2 cut(s)	347, 867
AclI	AACGTT	1 cut(s)	522
AclWI	GGATC	2 cut(s)	166, 494
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	1 cut(s)	74
AcuI	CTGAAG	1 cut(s)	126
AfaI	GTAC	5 cut(s)	61, 200, 494, 509, 516
AhdI	GACNNNNNGTC	1 cut(s)	370
AhlI	ACTAGT	1 cut(s)	56
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	7 cut(s)	16, 151, 574, 681, 736, 743, 855
AluI	AGCT	7 cut(s)	16, 151, 574, 681, 736, 743, 855
Alw26I	GTCTC	2 cut(s)	126, 357
AlwI	GGATC	2 cut(s)	166, 494
AoxI	GGCC	6 cut(s)	36, 440, 474, 650, 720, 785
ApeKI	GCWGC	3 cut(s)	261, 308, 703
ApoI	RAATTY	1 cut(s)	74
Asp700I	GAANNNNTTC	1 cut(s)	729
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	3 cut(s)	440, 623, 650
AsuHPI	GGTGA	2 cut(s)	122, 157
AvaII	GGWCC	1 cut(s)	623
BalI	TGGCCA	1 cut(s)	38
BbvI	GCAGC	3 cut(s)	273, 295, 715
BccI	CCATC	2 cut(s)	17, 47
BceAI	ACGGC	1 cut(s)	461
BciT130I	CCWGG	1 cut(s)	80
BclI	TGATCA	2 cut(s)	223, 451
BcoDI	GTCTC	2 cut(s)	126, 357
BcuI	ACTAGT	1 cut(s)	56
BfaI	CTAG	4 cut(s)	57, 152, 737, 789
BglII	AGATCT	1 cut(s)	670
BisI	GCNGC	4 cut(s)	262, 309, 347, 704
BlsI	GCNGC	4 cut(s)	263, 310, 348, 705
BmcAI	AGTACT	1 cut(s)	509
Bme1390I	CCNGG	1 cut(s)	80
Bme18I	GGWCC	1 cut(s)	623
BmeRI	GACNNNNNGTC	1 cut(s)	370
BmgT120I	GGNCC	3 cut(s)	440, 623, 650
BmiI	GGNNCC	3 cut(s)	441, 711, 846
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	2 cut(s)	295, 382
BplI	GAGNNNNNCTC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	653
Bse3DI	GCAATG	1 cut(s)	113
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	1 cut(s)	653
BseGI	GGATG	3 cut(s)	294, 310, 397
BseMI	GCAATG	1 cut(s)	113
BseMII	CTCAG	1 cut(s)	755
BseRI	GAGGAG	1 cut(s)	63
BseXI	GCAGC	3 cut(s)	273, 295, 715
Bsh1236I	CGCG	2 cut(s)	30, 95
BshFI	GGCC	6 cut(s)	38, 442, 476, 652, 722, 787
BsiSI	CCGG	1 cut(s)	707
BslFI	GGGAC	1 cut(s)	496
BsmAI	GTCTC	2 cut(s)	126, 357
BsmFI	GGGAC	1 cut(s)	496
BsnI	GGCC	6 cut(s)	38, 442, 476, 652, 722, 787
Bsp143I	GATC	5 cut(s)	158, 223, 451, 499, 670
Bsp68I	TCGCGA	1 cut(s)	30
BspACI	CCGC	2 cut(s)	347, 867
BspANI	GGCC	6 cut(s)	38, 442, 476, 652, 722, 787
BspCNI	CTCAG	1 cut(s)	756
BspFNI	CGCG	2 cut(s)	30, 95
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	3 cut(s)	441, 711, 846
BspPI	GGATC	2 cut(s)	166, 494
BsrDI	GCAATG	1 cut(s)	113
BssECI	CCNNGG	1 cut(s)	653
BssMI	GATC	5 cut(s)	158, 223, 451, 499, 670
BssNAI	GTATAC	1 cut(s)	4
BssT1I	CCWWGG	1 cut(s)	653
Bst1107I	GTATAC	1 cut(s)	4
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	3 cut(s)	487, 608, 888
Bst6I	CTCTTC	1 cut(s)	581
BstAPI	GCANNNNNTGC	1 cut(s)	305
BstC8I	GCNNGC	2 cut(s)	14, 215
BstDEI	CTNAG	1 cut(s)	764
BstF5I	GGATG	3 cut(s)	294, 310, 397
BstFNI	CGCG	2 cut(s)	30, 95
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	5 cut(s)	161, 226, 454, 502, 673
BstMAI	GTCTC	2 cut(s)	126, 357
BstMBI	GATC	5 cut(s)	158, 223, 451, 499, 670
BstMWI	GCNNNNNNNGC	5 cut(s)	124, 305, 703, 709, 749
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	78
BstUI	CGCG	2 cut(s)	30, 95
BstV1I	GCAGC	3 cut(s)	273, 295, 715
BstX2I	RGATCY	1 cut(s)	670
BstYI	RGATCY	1 cut(s)	670
BstZ17I	GTATAC	1 cut(s)	4
BsuRI	GGCC	6 cut(s)	38, 442, 476, 652, 722, 787
BtgZI	GCGATG	1 cut(s)	555
BtsCI	GGATG	3 cut(s)	294, 310, 397
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	4 cut(s)	348, 607, 613, 884
BtuMI	TCGCGA	1 cut(s)	30
Cac8I	GCNNGC	2 cut(s)	14, 215
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	1 cut(s)	95
Cfr13I	GGNCC	3 cut(s)	440, 623, 650
Csp6I	GTAC	5 cut(s)	60, 199, 493, 508, 515
CviAII	CATG	3 cut(s)	202, 221, 400
CviQI	GTAC	5 cut(s)	60, 199, 493, 508, 515
DdeI	CTNAG	1 cut(s)	764
DpnI	GATC	5 cut(s)	160, 225, 453, 501, 672
DpnII	GATC	5 cut(s)	158, 223, 451, 499, 670
DriI	GACNNNNNGTC	1 cut(s)	370
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	581
Eam1105I	GACNNNNNGTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	581
Eco130I	CCWWGG	1 cut(s)	653
Eco147I	AGGCCT	1 cut(s)	787
Eco47I	GGWCC	1 cut(s)	623
Eco57I	CTGAAG	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	653
EcoT22I	ATGCAT	1 cut(s)	759
ErhI	CCWWGG	1 cut(s)	653
FaeI	CATG	3 cut(s)	205, 224, 403
FaiI	YATR	8 cut(s)	4, 203, 222, 401, 549, 645, 755, 794
FaqI	GGGAC	1 cut(s)	496
FatI	CATG	3 cut(s)	201, 220, 399
FbaI	TGATCA	2 cut(s)	223, 451
FblI	GTMKAC	1 cut(s)	3
Fnu4HI	GCNGC	4 cut(s)	262, 309, 347, 704
FokI	GGATG	3 cut(s)	301, 317, 404
Fsp4HI	GCNGC	4 cut(s)	262, 309, 347, 704
FspBI	CTAG	4 cut(s)	57, 152, 737, 789
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	4 cut(s)	262, 309, 347, 704
HaeIII	GGCC	6 cut(s)	38, 442, 476, 652, 722, 787
HapII	CCGG	1 cut(s)	707
HhaI	GCGC	1 cut(s)	95
Hin1II	CATG	3 cut(s)	205, 224, 403
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HindIII	AAGCTT	1 cut(s)	679
HinfI	GANTC	1 cut(s)	101
HpaII	CCGG	1 cut(s)	707
HphI	GGTGA	2 cut(s)	122, 157
Hpy166II	GTNNAC	4 cut(s)	4, 193, 271, 839
Hpy188I	TCNGA	6 cut(s)	22, 106, 418, 451, 557, 765
Hpy188III	TCNNGA	6 cut(s)	29, 43, 221, 362, 455, 503
Hpy8I	GTNNAC	4 cut(s)	4, 193, 271, 839
HpyAV	CCTTC	3 cut(s)	608, 887, 891
HpyCH4III	ACNGT	3 cut(s)	487, 608, 888
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	8 cut(s)	232, 311, 395, 407, 533, 647, 676, 757
HpyF10VI	GCNNNNNNNGC	5 cut(s)	124, 305, 703, 709, 749
HpyF3I	CTNAG	1 cut(s)	764
HpySE526I	ACGT	1 cut(s)	522
Hsp92II	CATG	3 cut(s)	205, 224, 403
HspAI	GCGC	1 cut(s)	93
Ksp22I	TGATCA	2 cut(s)	223, 451
Kzo9I	GATC	5 cut(s)	158, 223, 451, 499, 670
LmnI	GCTCC	2 cut(s)	571, 709
Lsp1109I	GCAGC	3 cut(s)	273, 295, 715
LweI	GCATC	2 cut(s)	295, 382
MaeI	CTAG	4 cut(s)	57, 152, 737, 789
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	1 cut(s)	602
MalI	GATC	5 cut(s)	160, 225, 453, 501, 672
MboI	GATC	5 cut(s)	158, 223, 451, 499, 670
MboII	GAAGA	4 cut(s)	179, 320, 598, 623
MfeI	CAATTG	2 cut(s)	627, 825
MflI	RGATCY	1 cut(s)	670
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	6 cut(s)	74, 354, 627, 811, 825, 870
MluNI	TGGCCA	1 cut(s)	38
MmeI	TCCRAC	2 cut(s)	549, 666
MnlI	CCTC	9 cut(s)	41, 174, 279, 385, 451, 582, 712, 766, 874
Mox20I	TGGCCA	1 cut(s)	38
Mph1103I	ATGCAT	1 cut(s)	759
MroXI	GAANNNNTTC	1 cut(s)	729
MscI	TGGCCA	1 cut(s)	38
Msp20I	TGGCCA	1 cut(s)	38
MspI	CCGG	1 cut(s)	707
MspR9I	CCNGG	1 cut(s)	80
MunI	CAATTG	2 cut(s)	627, 825
MvaI	CCWGG	1 cut(s)	80
MvnI	CGCG	2 cut(s)	30, 95
MwoI	GCNNNNNNNGC	5 cut(s)	124, 305, 703, 709, 749
NdeII	GATC	5 cut(s)	158, 223, 451, 499, 670
NlaIII	CATG	3 cut(s)	205, 224, 403
NlaIV	GGNNCC	3 cut(s)	441, 711, 846
NmeAIII	GCCGAG	1 cut(s)	103
NmuCI	GTSAC	1 cut(s)	602
NruI	TCGCGA	1 cut(s)	30
NsiI	ATGCAT	1 cut(s)	759
PagI	TCATGA	1 cut(s)	220
PceI	AGGCCT	1 cut(s)	787
PdmI	GAANNNNTTC	1 cut(s)	729
PfeI	GAWTC	1 cut(s)	101
PfoI	TCCNGGA	1 cut(s)	78
PkrI	GCNGC	4 cut(s)	263, 310, 348, 705
Psp1406I	AACGTT	1 cut(s)	522
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	3 cut(s)	441, 711, 846
PspPI	GGNCC	3 cut(s)	440, 623, 650
PsuI	RGATCY	1 cut(s)	670
RruI	TCGCGA	1 cut(s)	30
RsaI	GTAC	5 cut(s)	61, 200, 494, 509, 516
RsaNI	GTAC	5 cut(s)	60, 199, 493, 508, 515
SatI	GCNGC	4 cut(s)	262, 309, 347, 704
Sau3AI	GATC	5 cut(s)	158, 223, 451, 499, 670
Sau96I	GGNCC	3 cut(s)	440, 623, 650
ScaI	AGTACT	1 cut(s)	509
ScrFI	CCNGG	1 cut(s)	80
SfaNI	GCATC	2 cut(s)	295, 382
SinI	GGWCC	1 cut(s)	623
SpeI	ACTAGT	1 cut(s)	56
Sse9I	AATT	6 cut(s)	74, 354, 627, 811, 825, 870
SseBI	AGGCCT	1 cut(s)	787
SsiI	CCGC	2 cut(s)	347, 867
SspMI	CTAG	4 cut(s)	57, 152, 737, 789
StuI	AGGCCT	1 cut(s)	787
StyD4I	CCNGG	1 cut(s)	78
StyI	CCWWGG	1 cut(s)	653
TaaI	ACNGT	3 cut(s)	487, 608, 888
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	1 cut(s)	361
TasI	AATT	6 cut(s)	74, 354, 627, 811, 825, 870
TatI	WGTACW	4 cut(s)	59, 198, 507, 514
TauI	GCSGC	1 cut(s)	349
TfiI	GAWTC	1 cut(s)	101
TscAI	CASTG	4 cut(s)	348, 607, 613, 891
TseFI	GTSAC	1 cut(s)	602
TseI	GCWGC	3 cut(s)	261, 308, 703
Tsp45I	GTSAC	1 cut(s)	602
TspDTI	ATGAA	2 cut(s)	209, 347
TspRI	CASTG	4 cut(s)	348, 607, 613, 891
VpaK11BI	GGWCC	1 cut(s)	623
XapI	RAATTY	1 cut(s)	74
XmiI	GTMKAC	1 cut(s)	3
XmnI	GAANNNNTTC	1 cut(s)	729
XspI	CTAG	4 cut(s)	57, 152, 737, 789
ZrmI	AGTACT	1 cut(s)	509
Zsp2I	ATGCAT	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.