Rorug05G0400300

Serine threonine-protein kinase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003366
Physical Location & Seq
Reverse (-)
55020516 .. 55022262
1747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0400300.1

Sequence Viewer

Length: 477 bp
ATGCAGCGGAAGAAGGTGAACAAAATCTCGACCACTAAGTCGTTGATTGTAGTTTCTCGCGGTTGCACAGCCATATTGGTTGTCGTCAGATCTGTCAAATGCTCAGTAGTGGAGATTACAGATAAGCTGGAAGAAGAAGTGCACTCTTGCTCATCTACCAAGATTTCAAGTGCTCAAGATGACATAGAGATGGCTTCAGCAGTTACTGAAGCAACTAAGTTCACTACTTGTTCATGTGCATCGCAAGATAATGAAGAAGATGAAGTTTTAGGAGAAGCAGTGCTTTTAACCGAAAAGCATTCAGTTTCAGTTGAGGTTGGGGCTTCTTTGCTTCTCTTTGTCAGAGGAAAAGGAGGAGCTACTCAGAAAATGATTGAAGATGAGACAGGAGTGAAGATTAGAATCCCATTGTCAAAGAGGGAGGATTCCATTATTATTGAAGGCCCCTCAAGTGAAAGTGTATCTACAGCTTCATAG

Protein Analysis

158

Amino Acids

16.89

Weight (kDa)

5.16

Isoelectric Point (pI)

51.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 103 - 157 1.6e-08 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 37
AccII CGCG 1 cut(s) 60
AciI CCGC 2 cut(s) 7, 60
AcuI CTGAAG 2 cut(s) 180, 228
AgsI TTSAA 3 cut(s) 168, 377, 440
AluBI AGCT 3 cut(s) 127, 359, 470
AluI AGCT 3 cut(s) 127, 359, 470
Alw21I GWGCWC 2 cut(s) 144, 175
Alw26I GTCTC 1 cut(s) 377
Alw44I GTGCAC 1 cut(s) 140
AlwNI CAGNNNCTG 1 cut(s) 206
AoxI GGCC 1 cut(s) 442
ApaLI GTGCAC 1 cut(s) 140
ApeKI GCWGC 1 cut(s) 4
AspS9I GGNCC 1 cut(s) 443
AsuHPI GGTGA 1 cut(s) 28
BaeGI GKGCMC 1 cut(s) 144
Bbv12I GWGCWC 2 cut(s) 144, 175
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 377
BfmI CTRYAG 1 cut(s) 465
BglII AGATCT 1 cut(s) 89
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
BmgT120I GGNCC 1 cut(s) 443
BmiI GGNNCC 1 cut(s) 445
BmsI GCATC 1 cut(s) 248
BpuEI CTTGAG 2 cut(s) 159, 433
BsaBI GATNNNNATC 1 cut(s) 401
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bse8I GATNNNNATC 1 cut(s) 401
BseJI GATNNNNATC 1 cut(s) 401
BseMII CTCAG 2 cut(s) 117, 377
BseRI GAGGAG 1 cut(s) 369
BseSI GKGCMC 1 cut(s) 144
BseXI GCAGC 1 cut(s) 16
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 444
BsiHKAI GWGCWC 2 cut(s) 144, 175
BsmAI GTCTC 1 cut(s) 377
BsmI GAATGC 1 cut(s) 298
BsnI GGCC 1 cut(s) 444
Bsp1286I GDGCHC 2 cut(s) 144, 175
Bsp143I GATC 1 cut(s) 89
BspACI CCGC 2 cut(s) 7, 60
BspANI GGCC 1 cut(s) 444
BspCNI CTCAG 2 cut(s) 116, 376
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 445
BssMI GATC 1 cut(s) 89
BstDEI CTNAG 4 cut(s) 36, 103, 216, 363
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 1 cut(s) 92
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 1 cut(s) 89
BstSFI CTRYAG 1 cut(s) 465
BstSLI GKGCMC 1 cut(s) 144
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 89
BstYI RGATCY 1 cut(s) 89
BsuRI GGCC 1 cut(s) 444
BtgZI GCGATG 1 cut(s) 225
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 285
CaiI CAGNNNCTG 1 cut(s) 206
Cfr13I GGNCC 1 cut(s) 443
CviAII CATG 1 cut(s) 234
CviJI RGCY 7 cut(s) 71, 127, 194, 323, 359, 444, 470
CviKI_1 RGCY 7 cut(s) 71, 127, 194, 323, 359, 444, 470
DdeI CTNAG 4 cut(s) 36, 103, 216, 363
DpnI GATC 1 cut(s) 91
DpnII GATC 1 cut(s) 89
DrdI GACNNNNNNGTC 1 cut(s) 37
DseDI GACNNNNNNGTC 1 cut(s) 37
Eco57I CTGAAG 2 cut(s) 180, 228
EcoO109I RGGNCCY 1 cut(s) 443
FaeI CATG 1 cut(s) 237
FaiI YATR 4 cut(s) 74, 185, 235, 475
FalI AAGNNNNNCTT 2 cut(s) 267, 299
FatI CATG 1 cut(s) 233
Fnu4HI GCNGC 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 5
HaeIII GGCC 1 cut(s) 444
Hin1II CATG 1 cut(s) 237
HinfI GANTC 2 cut(s) 402, 425
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 3 cut(s) 19, 142, 222
Hpy188I TCNGA 3 cut(s) 89, 344, 366
Hpy188III TCNNGA 2 cut(s) 28, 176
Hpy8I GTNNAC 3 cut(s) 19, 142, 222
HpyAV CCTTC 2 cut(s) 7, 434
HpyCH4V TGCA 4 cut(s) 4, 66, 142, 239
HpyF3I CTNAG 4 cut(s) 36, 103, 216, 363
Hsp92II CATG 1 cut(s) 237
Kzo9I GATC 1 cut(s) 89
LmnI GCTCC 1 cut(s) 356
LpnPI CCDG 2 cut(s) 113, 372
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 248
MaeIII GTNAC 1 cut(s) 202
MalI GATC 1 cut(s) 91
MboI GATC 1 cut(s) 89
MboII GAAGA 7 cut(s) 22, 143, 146, 266, 269, 389, 406
MflI RGATCY 1 cut(s) 89
MhlI GDGCHC 2 cut(s) 144, 175
MnlI CCTC 6 cut(s) 307, 338, 347, 411, 415, 457
MseI TTAA 1 cut(s) 287
MslI CAYNNNNRTG 1 cut(s) 188
MspA1I CMGCKG 1 cut(s) 7
Mva1269I GAATGC 1 cut(s) 298
MvnI CGCG 1 cut(s) 60
NdeII GATC 1 cut(s) 89
NlaIII CATG 1 cut(s) 237
NlaIV GGNNCC 1 cut(s) 445
PctI GAATGC 1 cut(s) 298
PfeI GAWTC 2 cut(s) 402, 425
PkrI GCNGC 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 445
PspPI GGNCC 1 cut(s) 443
PstNI CAGNNNCTG 1 cut(s) 206
PsuI RGATCY 1 cut(s) 89
RseI CAYNNNNRTG 1 cut(s) 188
SaqAI TTAA 1 cut(s) 287
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 1 cut(s) 89
Sau96I GGNCC 1 cut(s) 443
SduI GDGCHC 2 cut(s) 144, 175
SetI ASST 5 cut(s) 18, 129, 318, 361, 472
SfaNI GCATC 1 cut(s) 248
SfcI CTRYAG 1 cut(s) 465
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 2 cut(s) 174, 448
SmoI CTYRAG 2 cut(s) 174, 448
SsiI CCGC 2 cut(s) 7, 60
TaqI TCGA 1 cut(s) 29
TfiI GAWTC 2 cut(s) 402, 425
Tru1I TTAA 1 cut(s) 287
Tru9I TTAA 1 cut(s) 287
TscAI CASTG 1 cut(s) 285
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 4 cut(s) 222, 267, 276, 462
TspRI CASTG 1 cut(s) 285
VneI GTGCAC 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.