Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0005631

Physical Location & Seq

Genomic Coordinates Forward (+)

944131 .. 944755

Gene Structure 625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1014500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTCTTCCGGTAGCTTCTTGTTAAGTGAAGTCCACACACTTCCCCTCTTTCTCCTCTCAGCCATGGTTTCCTATACCTTGCTCCACTCCTCGTACGGCTCCGGCGTCTGGTCCAAGAAGGAGTGGGTCATCCCTGAGATCGACGACGACGACACCGTTTTGACGTTCAAGGGGAACTCCAACTTCTTCTGGGCGGACCGCGAGCGGCAAGCTCGTGAGGCGGTAGAGAATTCGAAGTCGGATTTGCAGATTGGTGAGTCTGCAAGTCCACAATGTAAAGCTGCACTTCAAGAAACTACTCGTATCATTGAACAAAGTCTTACAACTAATGGAAAAGCAATAAGGGCGTTGTTTGGTGCAAGCCAGCTTGATATTGATGGTGACTTCATATATTTTCTGGCAGATGCTGCTGTTATAGCGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008239 GO:0009553 GO:0009561 GO:0016787 GO:0019538 GO:0032501 GO:0032502 GO:0043170 GO:0044238 GO:0048229 GO:0048856 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

142

Amino Acids

15.56

Weight (kDa)

4.59

Isoelectric Point (pI)

28.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72810
fragaria_vesca	FvH4_6g34290
malus_domestica	MD02G1014500.v1.1 MD09G1187000.v1.1 MD17G1171300.v1.1
prunus_persica	Prupe.3G044400_v2.0.a1 Prupe.6G348900_v2.0.a1
pyrus_communis	pycom02g01320 pycom02g01380 pycom09g10360
rosa_chinensis	RchiOBHm_Chr2g0144621
rosa_laevigata	RLG00000020095
rosa_multiflora	Rmu_co8042306.1_g000001 Rmu_sc0009300.1_g000001
rosa_rugosa	Rorug02G0388200 Rorug05G0056000
rosa_samantha	Rh2AG440200 Rh2BG450100 Rh2BG450600 Rh2CG427300 Rh2DG460000 Rh2DG460600 Rh4BG120100 Rh5BG145500 Rh5BG145600 Rh6AG467600 Rh7CG089000
rosa_wichuraiana	Rw2G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	205
AccII	CGCG	1 cut(s)	201
AciI	CCGC	4 cut(s)	194, 199, 205, 221
AcsI	RAATTY	1 cut(s)	229
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	3 cut(s)	169, 290, 311
AluBI	AGCT	4 cut(s)	15, 212, 281, 367
AluI	AGCT	4 cut(s)	15, 212, 281, 367
AlwNI	CAGNNNCTG	1 cut(s)	407
ApeKI	GCWGC	2 cut(s)	281, 407
ApoI	RAATTY	1 cut(s)	229
AspS9I	GGNCC	2 cut(s)	111, 196
AsuHPI	GGTGA	2 cut(s)	266, 392
AsuII	TTCGAA	1 cut(s)	233
AvaII	GGWCC	2 cut(s)	111, 196
BauI	CACGAG	1 cut(s)	213
BbvI	GCAGC	2 cut(s)	268, 394
BccI	CCATC	1 cut(s)	371
BceAI	ACGGC	1 cut(s)	112
BisI	GCNGC	3 cut(s)	206, 282, 408
BlsI	GCNGC	3 cut(s)	207, 283, 409
Bme18I	GGWCC	2 cut(s)	111, 196
BmgT120I	GGNCC	2 cut(s)	111, 196
BmiI	GGNNCC	1 cut(s)	100
BmsI	GCATC	1 cut(s)	394
Bpu14I	TTCGAA	1 cut(s)	233
BsaHI	GRCGYC	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	63
BsaWI	WCCGGW	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMII	CTCAG	2 cut(s)	72, 126
BseRI	GAGGAG	2 cut(s)	44, 79
BseXI	GCAGC	2 cut(s)	268, 394
BsgI	GTGCAG	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	201
BsiSI	CCGG	2 cut(s)	9, 102
BsiWI	CGTACG	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	108
Bsp119I	TTCGAA	1 cut(s)	233
Bsp143I	GATC	1 cut(s)	138
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	4 cut(s)	194, 199, 205, 221
BspCNI	CTCAG	2 cut(s)	71, 127
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	100
BspT104I	TTCGAA	1 cut(s)	233
BsrBI	CCGCTC	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	1 cut(s)	138
BssNI	GRCGYC	1 cut(s)	105
BssSI	CACGAG	1 cut(s)	213
BssT1I	CCWWGG	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	157
BstACI	GRCGYC	1 cut(s)	105
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstBI	TTCGAA	1 cut(s)	233
BstC8I	GCNNGC	4 cut(s)	203, 210, 361, 365
BstDEI	CTNAG	2 cut(s)	58, 135
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	129
BstFNI	CGCG	1 cut(s)	201
BstKTI	GATC	1 cut(s)	141
BstMBI	GATC	1 cut(s)	138
BstMWI	GCNNNNNNNGC	4 cut(s)	218, 344, 407, 416
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	268, 394
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	129
Cac8I	GCNNGC	4 cut(s)	203, 210, 361, 365
CaiI	CAGNNNCTG	1 cut(s)	407
Cfr13I	GGNCC	2 cut(s)	111, 196
CpoI	CGGWCCG	1 cut(s)	196
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	94
CspI	CGGWCCG	1 cut(s)	196
CviAII	CATG	1 cut(s)	64
CviJI	RGCY	7 cut(s)	15, 62, 99, 212, 281, 363, 367
CviKI_1	RGCY	7 cut(s)	15, 62, 99, 212, 281, 363, 367
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	2 cut(s)	58, 135
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
EciI	GGCGGA	1 cut(s)	209
Eco130I	CCWWGG	1 cut(s)	63
Eco47I	GGWCC	2 cut(s)	111, 196
EcoRI	GAATTC	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	1 cut(s)	67
FaiI	YATR	5 cut(s)	65, 75, 389, 391, 416
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FatI	CATG	1 cut(s)	63
Fnu4HI	GCNGC	3 cut(s)	206, 282, 408
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	3 cut(s)	206, 282, 408
GluI	GCNGC	3 cut(s)	206, 282, 408
HapII	CCGG	2 cut(s)	9, 102
HgaI	GACGC	1 cut(s)	94
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	1 cut(s)	67
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	2 cut(s)	9, 102
HphI	GGTGA	2 cut(s)	266, 392
Hpy166II	GTNNAC	2 cut(s)	34, 269
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	2 cut(s)	215, 290
Hpy8I	GTNNAC	2 cut(s)	34, 269
Hpy99I	CGWCG	3 cut(s)	146, 149, 152
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	4 cut(s)	247, 263, 284, 359
HpyF10VI	GCNNNNNNNGC	4 cut(s)	218, 344, 407, 416
HpyF3I	CTNAG	2 cut(s)	58, 135
HpySE526I	ACGT	1 cut(s)	164
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	138
LmnI	GCTCC	2 cut(s)	87, 104
LpnPI	CCDG	7 cut(s)	22, 94, 115, 147, 175, 377, 383
Lsp1109I	GCAGC	2 cut(s)	268, 394
LweI	GCATC	1 cut(s)	394
MaeII	ACGT	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	1 cut(s)	140
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	1 cut(s)	138
MboII	GAAGA	1 cut(s)	178
MluCI	AATT	1 cut(s)	229
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	2 cut(s)	204, 219
MnlI	CCTC	4 cut(s)	56, 65, 100, 211
MseI	TTAA	1 cut(s)	23
MspI	CCGG	2 cut(s)	9, 102
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	4 cut(s)	218, 344, 407, 416
NcoI	CCATGG	1 cut(s)	63
NdeII	GATC	1 cut(s)	138
NlaIII	CATG	1 cut(s)	67
NlaIV	GGNNCC	1 cut(s)	100
NmuCI	GTSAC	1 cut(s)	380
NspV	TTCGAA	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	3 cut(s)	102, 147, 153
Pfl23II	CGTACG	1 cut(s)	93
PkrI	GCNGC	3 cut(s)	207, 283, 409
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PspLI	CGTACG	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	100
PspPI	GGNCC	2 cut(s)	111, 196
PstNI	CAGNNNCTG	1 cut(s)	407
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
Rsr2I	CGGWCCG	1 cut(s)	196
RsrII	CGGWCCG	1 cut(s)	196
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	3 cut(s)	206, 282, 408
Sau3AI	GATC	1 cut(s)	138
Sau96I	GGNCC	2 cut(s)	111, 196
SchI	GAGTC	1 cut(s)	266
SetI	ASST	6 cut(s)	17, 80, 167, 214, 283, 369
SfaNI	GCATC	1 cut(s)	394
SfuI	TTCGAA	1 cut(s)	233
SinI	GGWCC	2 cut(s)	111, 196
Sse9I	AATT	1 cut(s)	229
SsiI	CCGC	4 cut(s)	194, 199, 205, 221
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	2 cut(s)	141, 233
TasI	AATT	1 cut(s)	229
TauI	GCSGC	1 cut(s)	208
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TseFI	GTSAC	1 cut(s)	380
TseI	GCWGC	2 cut(s)	281, 407
Tsp45I	GTSAC	1 cut(s)	380
TspDTI	ATGAA	1 cut(s)	376
VpaK11BI	GGWCC	2 cut(s)	111, 196
XapI	RAATTY	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.