Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8042306.1

Orthogroup ID

OG0005631

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 554

Gene Structure 554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8042306.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 554 bp

ccgccgccaaatgccgcgacaacatccgcgacgacgcccaccgccacaacaccacccacacccaccacttctccgccaagtacgtccccttcaactcctccgcagacgacacgtcgtccgagtcctactccctcgacgaggtcgtctaccgctcccagtccggcggcctcctcgacgtccagcacgacatggccgccctcaagaactacgacggcaagtactggcgcgacctcttcgactcccgcgtcggcaaaaccacctggccctacggctccggcgtctggtccaagaaggagtgggtcctccctgagatcgacagcgacgacatcgtctccgccttcgagggcaactccaacctcttctgggccgagcgctacggcaaaacagtcctcggcatgaacgagctctgggtcaagcactgcggcatcagccacaccggctccttcaaggacctaggcatgaccgtcctcgtcagccaggtcaatcgcctccgcaaaatgaaccgccccgtcgtcggagtcggatgcgcctccaccggcgacacctccgccgcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004795 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008144 GO:0016829 GO:0016835 GO:0016838 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044464 GO:0048037 GO:0050662 GO:0070279 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00750 ko01100 ko01110 ko01120 ko01230 map00260 map00750 map01100 map01110 map01120 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

184

Amino Acids

20.57

Weight (kDa)

6.47

Isoelectric Point (pI)

25.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72810
fragaria_vesca	FvH4_6g34290
malus_domestica	MD02G1014500.v1.1 MD09G1187000.v1.1 MD17G1171300.v1.1
prunus_persica	Prupe.3G044400_v2.0.a1 Prupe.6G348900_v2.0.a1
pyrus_communis	pycom02g01320 pycom02g01380 pycom09g10360
rosa_chinensis	RchiOBHm_Chr2g0144621
rosa_laevigata	RLG00000020095
rosa_multiflora	Rmu_co8042306.1_g000001 Rmu_sc0009300.1_g000001
rosa_rugosa	Rorug02G0388200 Rorug05G0056000
rosa_samantha	Rh2AG440200 Rh2BG450100 Rh2BG450600 Rh2CG427300 Rh2DG460000 Rh2DG460600 Rh4BG120100 Rh5BG145500 Rh5BG145600 Rh6AG467600 Rh7CG089000
rosa_wichuraiana	Rw2G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	142, 244, 328
AatII	GACGTC	1 cut(s)	179
AccBSI	CCGCTC	1 cut(s)	152
AccI	GTMKAC	1 cut(s)	146
AccII	CGCG	4 cut(s)	17, 29, 227, 245
AcoI	YGGCCR	1 cut(s)	191
AcyI	GRCGYC	3 cut(s)	35, 176, 278
AfaI	GTAC	2 cut(s)	82, 220
AfeI	AGCGCT	1 cut(s)	373
AfiI	CCNNNNNNNGG	4 cut(s)	138, 281, 363, 514
AflIII	ACRYGT	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	93, 447
AhdI	GACNNNNNGTC	2 cut(s)	111, 114
AjiI	CACGTC	1 cut(s)	113
AjnI	CCWGG	2 cut(s)	259, 476
AluBI	AGCT	1 cut(s)	405
AluI	AGCT	1 cut(s)	405
Alw21I	GWGCWC	1 cut(s)	407
Alw26I	GTCTC	1 cut(s)	336
Aor51HI	AGCGCT	1 cut(s)	373
AoxI	GGCC	4 cut(s)	165, 191, 262, 365
AspA2I	CCTAGG	1 cut(s)	453
AspLEI	GCGC	3 cut(s)	227, 374, 529
AspS9I	GGNCC	5 cut(s)	263, 284, 300, 365, 450
AvaII	GGWCC	3 cut(s)	284, 300, 450
AvrII	CCTAGG	1 cut(s)	453
BanII	GRGCYC	1 cut(s)	407
BarI	GAAGNNNNNNTAC	2 cut(s)	73, 105
Bbv12I	GWGCWC	1 cut(s)	407
BceAI	ACGGC	3 cut(s)	228, 285, 393
BciT130I	CCWGG	2 cut(s)	261, 478
BcoDI	GTCTC	1 cut(s)	336
BfaI	CTAG	1 cut(s)	454
BfoI	RGCGCY	1 cut(s)	375
BglI	GCCNNNNNGGC	1 cut(s)	437
BisI	GCNGC	6 cut(s)	5, 15, 165, 194, 423, 551
BlnI	CCTAGG	1 cut(s)	453
BlsI	GCNGC	6 cut(s)	6, 16, 166, 195, 424, 552
BmcAI	AGTACT	1 cut(s)	220
Bme1390I	CCNGG	2 cut(s)	261, 478
Bme18I	GGWCC	3 cut(s)	284, 300, 450
BmeRI	GACNNNNNGTC	2 cut(s)	111, 114
BmgBI	CACGTC	1 cut(s)	113
BmgT120I	GGNCC	5 cut(s)	263, 284, 300, 365, 450
BmiI	GGNNCC	3 cut(s)	273, 301, 441
BmrFI	CCNGG	2 cut(s)	261, 478
BmrI	ACTGGG	1 cut(s)	150
BmsI	GCATC	2 cut(s)	434, 514
BmuI	ACTGGG	1 cut(s)	150
BplI	GAGNNNNNCTC	4 cut(s)	112, 144, 334, 366
BpuEI	CTTGAG	1 cut(s)	184
BsaHI	GRCGYC	3 cut(s)	35, 176, 278
BsaJI	CCNNGG	2 cut(s)	390, 453
BsaXI	ACNNNNNCTCC	6 cut(s)	55, 85, 316, 346, 424, 454
Bsc4I	CCNNNNNNNGG	4 cut(s)	138, 281, 363, 514
Bse118I	RCCGGY	2 cut(s)	436, 535
Bse1I	ACTGG	2 cut(s)	156, 226
BseBI	CCWGG	2 cut(s)	261, 478
BseDI	CCNNGG	2 cut(s)	390, 453
BseGI	GGATG	2 cut(s)	23, 529
BseLI	CCNNNNNNNGG	4 cut(s)	138, 281, 363, 514
BseMII	CTCAG	1 cut(s)	299
BseNI	ACTGG	2 cut(s)	156, 226
BseRI	GAGGAG	2 cut(s)	87, 160
Bsh1236I	CGCG	4 cut(s)	17, 29, 227, 245
BshFI	GGCC	4 cut(s)	167, 193, 264, 367
BsiHKAI	GWGCWC	1 cut(s)	407
BsiSI	CCGG	4 cut(s)	161, 275, 437, 536
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	4 cut(s)	138, 281, 363, 514
BsmAI	GTCTC	1 cut(s)	336
BsmBI	CGTCTC	1 cut(s)	336
BsmFI	GGGAC	1 cut(s)	70
BsnI	GGCC	4 cut(s)	167, 193, 264, 367
Bsp1286I	GDGCHC	1 cut(s)	407
Bsp143I	GATC	1 cut(s)	311
BspANI	GGCC	4 cut(s)	167, 193, 264, 367
BspCNI	CTCAG	1 cut(s)	300
BspFNI	CGCG	4 cut(s)	17, 29, 227, 245
BspLI	GGNNCC	3 cut(s)	273, 301, 441
BsrBI	CCGCTC	1 cut(s)	152
BsrFI	RCCGGY	2 cut(s)	436, 535
BsrI	ACTGG	2 cut(s)	156, 226
BssAI	RCCGGY	2 cut(s)	436, 535
BssECI	CCNNGG	2 cut(s)	390, 453
BssMI	GATC	1 cut(s)	311
BssNI	GRCGYC	3 cut(s)	35, 176, 278
BssT1I	CCWWGG	1 cut(s)	453
Bst2UI	CCWGG	2 cut(s)	261, 478
Bst4CI	ACNGT	2 cut(s)	387, 465
Bst6I	CTCTTC	2 cut(s)	238, 364
BstACI	GRCGYC	3 cut(s)	35, 176, 278
BstDEI	CTNAG	1 cut(s)	308
BstENI	CCTNNNNNAGG	1 cut(s)	136
BstF5I	GGATG	2 cut(s)	23, 529
BstFNI	CGCG	4 cut(s)	17, 29, 227, 245
BstH2I	RGCGCY	1 cut(s)	375
BstHHI	GCGC	3 cut(s)	227, 374, 529
BstKTI	GATC	1 cut(s)	314
BstMAI	GTCTC	1 cut(s)	336
BstMBI	GATC	1 cut(s)	311
BstMWI	GCNNNNNNNGC	2 cut(s)	428, 437
BstNI	CCWGG	2 cut(s)	261, 478
BstSCI	CCNGG	2 cut(s)	259, 476
BstUI	CGCG	4 cut(s)	17, 29, 227, 245
BsuRI	GGCC	4 cut(s)	167, 193, 264, 367
BtrI	CACGTC	1 cut(s)	113
BtsCI	GGATG	2 cut(s)	23, 529
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	1 cut(s)	417
CfoI	GCGC	3 cut(s)	227, 374, 529
Cfr10I	RCCGGY	2 cut(s)	436, 535
Cfr13I	GGNCC	5 cut(s)	263, 284, 300, 365, 450
CseI	GACGC	3 cut(s)	43, 234, 267
Csp6I	GTAC	2 cut(s)	81, 219
CviAII	CATG	3 cut(s)	189, 396, 459
CviJI	RGCY	9 cut(s)	167, 193, 264, 272, 367, 405, 431, 440, 476
CviKI_1	RGCY	9 cut(s)	167, 193, 264, 272, 367, 405, 431, 440, 476
CviQI	GTAC	2 cut(s)	81, 219
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	1 cut(s)	313
DpnII	GATC	1 cut(s)	311
DrdI	GACNNNNNNGTC	3 cut(s)	142, 244, 328
DriI	GACNNNNNGTC	2 cut(s)	111, 114
DseDI	GACNNNNNNGTC	3 cut(s)	142, 244, 328
EaeI	YGGCCR	1 cut(s)	191
Eam1104I	CTCTTC	2 cut(s)	238, 364
Eam1105I	GACNNNNNGTC	2 cut(s)	111, 114
EarI	CTCTTC	2 cut(s)	238, 364
EciI	GGCGGA	3 cut(s)	63, 324, 537
Ecl136II	GAGCTC	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	453
Eco24I	GRGCYC	1 cut(s)	407
Eco47I	GGWCC	3 cut(s)	284, 300, 450
Eco47III	AGCGCT	1 cut(s)	373
Eco53kI	GAGCTC	1 cut(s)	405
EcoICRI	GAGCTC	1 cut(s)	405
EcoNI	CCTNNNNNAGG	1 cut(s)	136
EcoO109I	RGGNCCY	2 cut(s)	300, 450
EcoRII	CCWGG	2 cut(s)	259, 476
EcoT14I	CCWWGG	1 cut(s)	453
EcoT38I	GRGCYC	1 cut(s)	407
ErhI	CCWWGG	1 cut(s)	453
Esp3I	CGTCTC	1 cut(s)	336
FaeI	CATG	3 cut(s)	192, 399, 462
FaiI	YATR	3 cut(s)	190, 397, 460
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	3 cut(s)	188, 395, 458
FauI	CCCGC	1 cut(s)	250
FblI	GTMKAC	1 cut(s)	146
Fnu4HI	GCNGC	6 cut(s)	5, 15, 165, 194, 423, 551
FokI	GGATG	2 cut(s)	10, 536
FriOI	GRGCYC	1 cut(s)	407
Fsp4HI	GCNGC	6 cut(s)	5, 15, 165, 194, 423, 551
FspBI	CTAG	1 cut(s)	454
GlaI	GCGC	3 cut(s)	226, 373, 528
GluI	GCNGC	6 cut(s)	5, 15, 165, 194, 423, 551
HaeII	RGCGCY	1 cut(s)	375
HaeIII	GGCC	4 cut(s)	167, 193, 264, 367
HapII	CCGG	4 cut(s)	161, 275, 437, 536
HgaI	GACGC	3 cut(s)	43, 234, 267
HhaI	GCGC	3 cut(s)	227, 374, 529
Hin1I	GRCGYC	3 cut(s)	35, 176, 278
Hin1II	CATG	3 cut(s)	192, 399, 462
Hin6I	GCGC	3 cut(s)	225, 372, 527
HinP1I	GCGC	3 cut(s)	225, 372, 527
HinfI	GANTC	3 cut(s)	121, 238, 518
HpaII	CCGG	4 cut(s)	161, 275, 437, 536
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	3 cut(s)	120, 517, 523
Hpy188III	TCNNGA	1 cut(s)	201
Hpy8I	GTNNAC	1 cut(s)	147
HpyAV	CCTTC	4 cut(s)	99, 285, 348, 453
HpyCH4III	ACNGT	2 cut(s)	387, 465
HpyCH4IV	ACGT	3 cut(s)	83, 112, 176
HpyF10VI	GCNNNNNNNGC	2 cut(s)	428, 437
HpyF3I	CTNAG	1 cut(s)	308
HpySE526I	ACGT	3 cut(s)	83, 112, 176
Hsp92I	GRCGYC	3 cut(s)	35, 176, 278
Hsp92II	CATG	3 cut(s)	192, 399, 462
HspAI	GCGC	3 cut(s)	225, 372, 527
Kzo9I	GATC	1 cut(s)	311
LmnI	GCTCC	3 cut(s)	157, 277, 445
LweI	GCATC	2 cut(s)	434, 514
MaeI	CTAG	1 cut(s)	454
MaeII	ACGT	3 cut(s)	83, 112, 176
MalI	GATC	1 cut(s)	313
MbiI	CCGCTC	1 cut(s)	152
MboI	GATC	1 cut(s)	311
MboII	GAAGA	2 cut(s)	225, 351
MhlI	GDGCHC	1 cut(s)	407
MlyI	GAGTC	3 cut(s)	130, 232, 527
MmeI	TCCRAC	3 cut(s)	377, 495, 501
MspI	CCGG	4 cut(s)	161, 275, 437, 536
MspR9I	CCNGG	2 cut(s)	261, 478
MvaI	CCWGG	2 cut(s)	261, 478
MvnI	CGCG	4 cut(s)	17, 29, 227, 245
MwoI	GCNNNNNNNGC	2 cut(s)	428, 437
NdeII	GATC	1 cut(s)	311
NlaIII	CATG	3 cut(s)	192, 399, 462
NlaIV	GGNNCC	3 cut(s)	273, 301, 441
NmeAIII	GCCGAG	2 cut(s)	371, 393
PcsI	WCGNNNNNNNCGW	6 cut(s)	140, 182, 242, 275, 320, 398
PflFI	GACNNNGTC	2 cut(s)	139, 328
PkrI	GCNGC	6 cut(s)	6, 16, 166, 195, 424, 552
PleI	GAGTC	3 cut(s)	129, 232, 526
PpsI	GAGTC	3 cut(s)	129, 232, 526
PpuMI	RGGWCCY	2 cut(s)	300, 450
Psp124BI	GAGCTC	1 cut(s)	407
Psp5II	RGGWCCY	2 cut(s)	300, 450
Psp6I	CCWGG	2 cut(s)	259, 476
PspGI	CCWGG	2 cut(s)	259, 476
PspN4I	GGNNCC	3 cut(s)	273, 301, 441
PspPI	GGNCC	5 cut(s)	263, 284, 300, 365, 450
PspPPI	RGGWCCY	2 cut(s)	300, 450
PsyI	GACNNNGTC	2 cut(s)	139, 328
RsaI	GTAC	2 cut(s)	82, 220
RsaNI	GTAC	2 cut(s)	81, 219
SacI	GAGCTC	1 cut(s)	407
SatI	GCNGC	6 cut(s)	5, 15, 165, 194, 423, 551
Sau3AI	GATC	1 cut(s)	311
Sau96I	GGNCC	5 cut(s)	263, 284, 300, 365, 450
ScaI	AGTACT	1 cut(s)	220
SchI	GAGTC	3 cut(s)	130, 232, 527
ScrFI	CCNGG	2 cut(s)	261, 478
SduI	GDGCHC	1 cut(s)	407
SfaNI	GCATC	2 cut(s)	434, 514
SgrAI	CRCCGGYG	1 cut(s)	535
SinI	GGWCC	3 cut(s)	284, 300, 450
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
SspMI	CTAG	1 cut(s)	454
SstI	GAGCTC	1 cut(s)	407
StyD4I	CCNGG	2 cut(s)	259, 476
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	2 cut(s)	387, 465
TaiI	ACGT	3 cut(s)	86, 115, 179
TaqI	TCGA	5 cut(s)	134, 173, 236, 314, 341
TatI	WGTACW	1 cut(s)	218
TauI	GCSGC	6 cut(s)	7, 17, 167, 196, 425, 553
TscAI	CASTG	1 cut(s)	424
TspDTI	ATGAA	2 cut(s)	412, 514
TspRI	CASTG	1 cut(s)	424
Tth111I	GACNNNGTC	2 cut(s)	139, 328
VpaK11BI	GGWCC	3 cut(s)	284, 300, 450
XagI	CCTNNNNNAGG	1 cut(s)	136
XmaJI	CCTAGG	1 cut(s)	453
XmiI	GTMKAC	1 cut(s)	146
XspI	CTAG	1 cut(s)	454
ZraI	GACGTC	1 cut(s)	177
ZrmI	AGTACT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.