Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005631

Physical Location & Seq

Genomic Coordinates Forward (+)

15057769 .. 15057990

Gene Structure 222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG145500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGCTGCCCTCAAGAACTACGACGGCAAGTACTGGCGCGACCTCTTCGACTCCCGCGTCGGCAAAACCACCTGGCCCTACGGCTCCGGCGTCTGGTCAAAAAAGGAATGGGTCCTCCCTGAGATCGACAGCGACGACATCATCTCCGCCTTCGAAGGCAACTCCAACCTCTTCTGGGCCGAGCGCTACGGCAAAAAAGTCCTCGGCATGAACGAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004795 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008144 GO:0016829 GO:0016835 GO:0016838 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044464 GO:0048037 GO:0050662 GO:0070279 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00750 ko01100 ko01110 ko01120 ko01230 map00260 map00750 map01100 map01110 map01120 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

73

Amino Acids

8.48

Weight (kDa)

5.27

Isoelectric Point (pI)

11.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72810
fragaria_vesca	FvH4_6g34290
malus_domestica	MD02G1014500.v1.1 MD09G1187000.v1.1 MD17G1171300.v1.1
prunus_persica	Prupe.3G044400_v2.0.a1 Prupe.6G348900_v2.0.a1
pyrus_communis	pycom02g01320 pycom02g01380 pycom09g10360
rosa_chinensis	RchiOBHm_Chr2g0144621
rosa_laevigata	RLG00000020095
rosa_multiflora	Rmu_co8042306.1_g000001 Rmu_sc0009300.1_g000001
rosa_rugosa	Rorug02G0388200 Rorug05G0056000
rosa_samantha	Rh2AG440200 Rh2BG450100 Rh2BG450600 Rh2CG427300 Rh2DG460000 Rh2DG460600 Rh4BG120100 Rh5BG145500 Rh5BG145600 Rh6AG467600 Rh7CG089000
rosa_wichuraiana	Rw2G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
AccII	CGCG	2 cut(s)	39, 57
AciI	CCGC	2 cut(s)	55, 147
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	1 cut(s)	32
AfeI	AGCGCT	1 cut(s)	185
AfiI	CCNNNNNNNGG	2 cut(s)	93, 175
AjnI	CCWGG	1 cut(s)	71
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
Alw21I	GWGCWC	1 cut(s)	219
Aor51HI	AGCGCT	1 cut(s)	185
AoxI	GGCC	2 cut(s)	74, 177
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	2 cut(s)	39, 186
AspS9I	GGNCC	3 cut(s)	75, 112, 177
AsuII	TTCGAA	1 cut(s)	153
AvaII	GGWCC	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	219
BceAI	ACGGC	3 cut(s)	40, 97, 205
BciT130I	CCWGG	1 cut(s)	73
BfaI	CTAG	1 cut(s)	220
BfoI	RGCGCY	1 cut(s)	187
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmcAI	AGTACT	1 cut(s)	32
Bme1390I	CCNGG	1 cut(s)	73
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	3 cut(s)	75, 112, 177
BmiI	GGNNCC	2 cut(s)	85, 113
BmrFI	CCNGG	1 cut(s)	73
Bpu14I	TTCGAA	1 cut(s)	153
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	202
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 175
Bse1I	ACTGG	1 cut(s)	38
BseBI	CCWGG	1 cut(s)	73
BseDI	CCNNGG	1 cut(s)	202
BseLI	CCNNNNNNNGG	2 cut(s)	93, 175
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	1 cut(s)	38
Bsh1236I	CGCG	2 cut(s)	39, 57
BshFI	GGCC	2 cut(s)	76, 179
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	87
BslI	CCNNNNNNNGG	2 cut(s)	93, 175
BsnI	GGCC	2 cut(s)	76, 179
Bsp119I	TTCGAA	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	123
BspACI	CCGC	2 cut(s)	55, 147
BspANI	GGCC	2 cut(s)	76, 179
BspCNI	CTCAG	1 cut(s)	112
BspFNI	CGCG	2 cut(s)	39, 57
BspLI	GGNNCC	2 cut(s)	85, 113
BspT104I	TTCGAA	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	1 cut(s)	123
BssNI	GRCGYC	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	73
Bst6I	CTCTTC	2 cut(s)	50, 176
BstACI	GRCGYC	1 cut(s)	90
BstBI	TTCGAA	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	120
BstFNI	CGCG	2 cut(s)	39, 57
BstH2I	RGCGCY	1 cut(s)	187
BstHHI	GCGC	2 cut(s)	39, 186
BstKTI	GATC	1 cut(s)	126
BstMBI	GATC	1 cut(s)	123
BstNI	CCWGG	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	71
BstUI	CGCG	2 cut(s)	39, 57
BsuRI	GGCC	2 cut(s)	76, 179
CfoI	GCGC	2 cut(s)	39, 186
Cfr13I	GGNCC	3 cut(s)	75, 112, 177
CseI	GACGC	2 cut(s)	46, 79
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	1 cut(s)	208
CviJI	RGCY	5 cut(s)	5, 76, 84, 179, 217
CviKI_1	RGCY	5 cut(s)	5, 76, 84, 179, 217
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	1 cut(s)	125
DpnII	GATC	1 cut(s)	123
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
Eam1104I	CTCTTC	2 cut(s)	50, 176
EarI	CTCTTC	2 cut(s)	50, 176
EciI	GGCGGA	1 cut(s)	136
Ecl136II	GAGCTC	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	112
Eco47III	AGCGCT	1 cut(s)	185
Eco53kI	GAGCTC	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	217
EcoO109I	RGGNCCY	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	71
EcoT38I	GRGCYC	1 cut(s)	219
FaeI	CATG	1 cut(s)	211
FaiI	YATR	1 cut(s)	209
FatI	CATG	1 cut(s)	207
FauI	CCCGC	1 cut(s)	62
Fnu4HI	GCNGC	1 cut(s)	6
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	220
GlaI	GCGC	2 cut(s)	38, 185
GluI	GCNGC	1 cut(s)	6
HaeII	RGCGCY	1 cut(s)	187
HaeIII	GGCC	2 cut(s)	76, 179
HapII	CCGG	1 cut(s)	87
HgaI	GACGC	2 cut(s)	46, 79
HhaI	GCGC	2 cut(s)	39, 186
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	1 cut(s)	211
Hin6I	GCGC	2 cut(s)	37, 184
HinP1I	GCGC	2 cut(s)	37, 184
HinfI	GANTC	1 cut(s)	50
HpaII	CCGG	1 cut(s)	87
Hpy188III	TCNNGA	1 cut(s)	13
Hpy99I	CGWCG	3 cut(s)	26, 62, 137
HpyAV	CCTTC	2 cut(s)	149, 160
HpyF3I	CTNAG	1 cut(s)	120
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	211
HspAI	GCGC	2 cut(s)	37, 184
Kzo9I	GATC	1 cut(s)	123
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	7 cut(s)	19, 58, 79, 85, 100, 132, 160
MaeI	CTAG	1 cut(s)	220
MalI	GATC	1 cut(s)	125
MboI	GATC	1 cut(s)	123
MboII	GAAGA	2 cut(s)	37, 163
MhlI	GDGCHC	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	5 cut(s)	20, 53, 125, 179, 212
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	73
MvaI	CCWGG	1 cut(s)	73
MvnI	CGCG	2 cut(s)	39, 57
NdeII	GATC	1 cut(s)	123
NlaIII	CATG	1 cut(s)	211
NlaIV	GGNNCC	2 cut(s)	85, 113
NmeAIII	GCCGAG	2 cut(s)	183, 205
NspV	TTCGAA	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	4 cut(s)	54, 87, 132, 210
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PpuMI	RGGWCCY	1 cut(s)	112
Psp124BI	GAGCTC	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	71
PspN4I	GGNNCC	2 cut(s)	85, 113
PspPI	GGNCC	3 cut(s)	75, 112, 177
PspPPI	RGGWCCY	1 cut(s)	112
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SacI	GAGCTC	1 cut(s)	219
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	123
Sau96I	GGNCC	3 cut(s)	75, 112, 177
ScaI	AGTACT	1 cut(s)	32
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	73
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	4 cut(s)	45, 74, 171, 219
SfuI	TTCGAA	1 cut(s)	153
SinI	GGWCC	1 cut(s)	112
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
SsiI	CCGC	2 cut(s)	55, 147
SspMI	CTAG	1 cut(s)	220
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	71
TaqI	TCGA	3 cut(s)	48, 126, 153
TatI	WGTACW	1 cut(s)	30
TseI	GCWGC	1 cut(s)	5
VpaK11BI	GGWCC	1 cut(s)	112
XspI	CTAG	1 cut(s)	220
ZrmI	AGTACT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.