Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005631

Physical Location & Seq

Genomic Coordinates Forward (+)

15058039 .. 15058314

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG145600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGACCGTCCTCGTCAGCCAGGTCAATCGCCTCCGCAAAATGAACCGCCCCGTCGTCGGCGTCGGATGCGCCTCCACCGACGACACCTCCGTCGCCTTGTCCTCCTACTACACCTCCGCCGGGATCCCCTCCATTGTGTTTCTGCCGGCGAATAAGATCTCGATGGCCCAGCTGGTCCAGCCCATCGCAAACGGGGCTTTTGTGCTGAGCATTGACACCGATTTCGATGGCTATATGAGCTGGGTTTGTAGAGGAAGTCTGATTGGAGGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004795 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016829 GO:0016835 GO:0016838 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0050662 GO:0070279 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00750 ko01100 ko01110 ko01120 ko01230 map00260 map00750 map01100 map01110 map01120 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

91

Amino Acids

9.65

Weight (kDa)

7.78

Isoelectric Point (pI)

32.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72810
fragaria_vesca	FvH4_6g34290
malus_domestica	MD02G1014500.v1.1 MD09G1187000.v1.1 MD17G1171300.v1.1
prunus_persica	Prupe.3G044400_v2.0.a1 Prupe.6G348900_v2.0.a1
pyrus_communis	pycom02g01320 pycom02g01380 pycom09g10360
rosa_chinensis	RchiOBHm_Chr2g0144621
rosa_laevigata	RLG00000020095
rosa_multiflora	Rmu_co8042306.1_g000001 Rmu_sc0009300.1_g000001
rosa_rugosa	Rorug02G0388200 Rorug05G0056000
rosa_samantha	Rh2AG440200 Rh2BG450100 Rh2BG450600 Rh2CG427300 Rh2DG460000 Rh2DG460600 Rh4BG120100 Rh5BG145500 Rh5BG145600 Rh6AG467600 Rh7CG089000
rosa_wichuraiana	Rw2G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
AciI	CCGC	3 cut(s)	34, 46, 117
AclWI	GGATC	2 cut(s)	118, 131
AcyI	GRCGYC	1 cut(s)	60
AfiI	CCNNNNNNNGG	2 cut(s)	56, 120
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	2 cut(s)	172, 240
AluI	AGCT	2 cut(s)	172, 240
AlwI	GGATC	2 cut(s)	118, 131
AoxI	GGCC	1 cut(s)	165
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
AspLEI	GCGC	1 cut(s)	71
AspS9I	GGNCC	2 cut(s)	166, 175
AsuC2I	CCSGG	1 cut(s)	121
AvaII	GGWCC	1 cut(s)	175
BamHI	GGATCC	1 cut(s)	123
BccI	CCATC	3 cut(s)	157, 191, 221
BciT130I	CCWGG	1 cut(s)	20
BcnI	CCSGG	1 cut(s)	121
BfaI	CTAG	1 cut(s)	274
BglII	AGATCT	1 cut(s)	156
BlpI	GCTNAGC	1 cut(s)	206
Bme1390I	CCNGG	2 cut(s)	20, 121
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	2 cut(s)	166, 175
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	2 cut(s)	20, 121
BmsI	GCATC	1 cut(s)	56
Bpu1102I	GCTNAGC	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	121
BsaHI	GRCGYC	1 cut(s)	60
BsaXI	ACNNNNNCTCC	4 cut(s)	71, 98, 101, 128
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 120
Bse118I	RCCGGY	1 cut(s)	145
BseBI	CCWGG	1 cut(s)	20
BseGI	GGATG	1 cut(s)	71
BseLI	CCNNNNNNNGG	2 cut(s)	56, 120
BseMII	CTCAG	1 cut(s)	197
BseYI	CCCAGC	2 cut(s)	168, 240
BshFI	GGCC	1 cut(s)	167
BsiSI	CCGG	2 cut(s)	120, 146
BslI	CCNNNNNNNGG	2 cut(s)	56, 120
BsnI	GGCC	1 cut(s)	167
Bsp143I	GATC	2 cut(s)	123, 156
Bsp1720I	GCTNAGC	1 cut(s)	206
BspACI	CCGC	3 cut(s)	34, 46, 117
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	125
BspPI	GGATC	2 cut(s)	118, 131
BsrFI	RCCGGY	1 cut(s)	145
BssAI	RCCGGY	1 cut(s)	145
BssMI	GATC	2 cut(s)	123, 156
BssNI	GRCGYC	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	7
BstACI	GRCGYC	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	1 cut(s)	206
BstF5I	GGATG	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	2 cut(s)	126, 159
BstMBI	GATC	2 cut(s)	123, 156
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 178, 194, 237
BstNI	CCWGG	1 cut(s)	20
BstSCI	CCNGG	2 cut(s)	18, 119
BstX2I	RGATCY	2 cut(s)	123, 156
BstYI	RGATCY	2 cut(s)	123, 156
BsuRI	GGCC	1 cut(s)	167
BtgZI	GCGATG	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	71
Cac8I	GCNNGC	1 cut(s)	147
CfoI	GCGC	1 cut(s)	71
Cfr10I	RCCGGY	1 cut(s)	145
Cfr13I	GGNCC	2 cut(s)	166, 175
CseI	GACGC	1 cut(s)	49
CviJI	RGCY	7 cut(s)	18, 167, 172, 181, 197, 231, 240
CviKI_1	RGCY	7 cut(s)	18, 167, 172, 181, 197, 231, 240
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	2 cut(s)	125, 158
DpnII	GATC	2 cut(s)	123, 156
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
EciI	GGCGGA	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	18
FaiI	YATR	2 cut(s)	234, 236
FokI	GGATG	1 cut(s)	78
FspBI	CTAG	1 cut(s)	274
GlaI	GCGC	1 cut(s)	70
GsaI	CCCAGC	2 cut(s)	172, 244
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	2 cut(s)	120, 146
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	71
Hin1I	GRCGYC	1 cut(s)	60
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HpaII	CCGG	2 cut(s)	120, 146
Hpy188I	TCNGA	2 cut(s)	65, 261
Hpy188III	TCNNGA	1 cut(s)	160
Hpy99I	CGWCG	5 cut(s)	56, 59, 65, 83, 95
HpyCH4III	ACNGT	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 178, 194, 237
HpyF3I	CTNAG	1 cut(s)	206
Hsp92I	GRCGYC	1 cut(s)	60
HspAI	GCGC	1 cut(s)	69
KroI	GCCGGC	1 cut(s)	145
KroNI	GCCGGC	1 cut(s)	147
Kzo9I	GATC	2 cut(s)	123, 156
LpnPI	CCDG	8 cut(s)	5, 32, 133, 158, 159, 182, 191, 226
LweI	GCATC	1 cut(s)	56
MaeI	CTAG	1 cut(s)	274
MalI	GATC	2 cut(s)	125, 158
MboI	GATC	2 cut(s)	123, 156
MflI	RGATCY	2 cut(s)	123, 156
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	9 cut(s)	20, 41, 82, 97, 112, 124, 139, 245, 260
MroNI	GCCGGC	1 cut(s)	145
MspA1I	CMGCKG	1 cut(s)	172
MspI	CCGG	2 cut(s)	120, 146
MspR9I	CCNGG	2 cut(s)	20, 121
MvaI	CCWGG	1 cut(s)	20
MwoI	GCNNNNNNNGC	4 cut(s)	66, 178, 194, 237
NaeI	GCCGGC	1 cut(s)	147
NciI	CCSGG	1 cut(s)	121
NdeII	GATC	2 cut(s)	123, 156
NgoMIV	GCCGGC	1 cut(s)	145
NlaIV	GGNNCC	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PdiI	GCCGGC	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	18
PspFI	CCCAGC	2 cut(s)	168, 240
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	125
PspPI	GGNCC	2 cut(s)	166, 175
PsuI	RGATCY	2 cut(s)	123, 156
PvuII	CAGCTG	1 cut(s)	172
Sau3AI	GATC	2 cut(s)	123, 156
Sau96I	GGNCC	2 cut(s)	166, 175
ScrFI	CCNGG	2 cut(s)	20, 121
SetI	ASST	5 cut(s)	24, 89, 116, 174, 242
SfaNI	GCATC	1 cut(s)	56
SinI	GGWCC	1 cut(s)	175
SsiI	CCGC	3 cut(s)	34, 46, 117
SspMI	CTAG	1 cut(s)	274
StyD4I	CCNGG	2 cut(s)	18, 119
TaaI	ACNGT	1 cut(s)	7
TaqI	TCGA	2 cut(s)	161, 225
TspDTI	ATGAA	1 cut(s)	56
TspGWI	ACGGA	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	175
XspI	CTAG	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.