Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005631

Physical Location & Seq

Genomic Coordinates Forward (+)

64995786 .. 64996139

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG467600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTCGTTTCGCGACTGGATCTCTGATGCACAAACTGAATCTCCGACGCACGACACAGACTTGAACGGGATCTTTGACTCTCTCCTCTTCCTCTGTGACTGGATCGTTGTCGTTGTCATCCAGAAGATCTGGTATGTGAGCTCCAGTGTCGGCAAAACCACCTGGCCCTACGACTCAGGTGTCTGGTCCAAAAACGACAGCGACGACATTGTCTCTGCCTTCGAAGGCAACTCCAACCTCTTCTGGCGGCTTCGACCTCATTCCTACCAACGAGATCTGAGATTGCATCTGAGCTCCAATTTGAATCTGTCAGGATCTGAGATTGCATATCTGAGCTCCGATTTGCTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004795 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008144 GO:0016829 GO:0016835 GO:0016838 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044464 GO:0048037 GO:0050662 GO:0070279 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00750 ko01100 ko01110 ko01120 ko01230 map00260 map00750 map01100 map01110 map01120 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

117

Amino Acids

13.4

Weight (kDa)

4.58

Isoelectric Point (pI)

36.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72810
fragaria_vesca	FvH4_6g34290
malus_domestica	MD02G1014500.v1.1 MD09G1187000.v1.1 MD17G1171300.v1.1
prunus_persica	Prupe.3G044400_v2.0.a1 Prupe.6G348900_v2.0.a1
pyrus_communis	pycom02g01320 pycom02g01380 pycom09g10360
rosa_chinensis	RchiOBHm_Chr2g0144621
rosa_laevigata	RLG00000020095
rosa_multiflora	Rmu_co8042306.1_g000001 Rmu_sc0009300.1_g000001
rosa_rugosa	Rorug02G0388200 Rorug05G0056000
rosa_samantha	Rh2AG440200 Rh2BG450100 Rh2BG450600 Rh2CG427300 Rh2DG460000 Rh2DG460600 Rh4BG120100 Rh5BG145500 Rh5BG145600 Rh6AG467600 Rh7CG089000
rosa_wichuraiana	Rw2G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	179, 209
AccII	CGCG	1 cut(s)	12
AciI	CCGC	1 cut(s)	247
AclWI	GGATC	4 cut(s)	26, 77, 110, 322
AgsI	TTSAA	2 cut(s)	64, 304
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	3 cut(s)	141, 294, 336
AluI	AGCT	3 cut(s)	141, 294, 336
Alw21I	GWGCWC	3 cut(s)	143, 296, 338
Alw26I	GTCTC	1 cut(s)	217
AlwI	GGATC	4 cut(s)	26, 77, 110, 322
AlwNI	CAGNNNCTG	1 cut(s)	317
AoxI	GGCC	1 cut(s)	164
AspS9I	GGNCC	2 cut(s)	165, 186
AsuII	TTCGAA	1 cut(s)	222
AvaII	GGWCC	1 cut(s)	186
BanII	GRGCYC	3 cut(s)	143, 296, 338
Bbv12I	GWGCWC	3 cut(s)	143, 296, 338
BciT130I	CCWGG	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	217
BglII	AGATCT	2 cut(s)	126, 274
BisI	GCNGC	1 cut(s)	248
BlsI	GCNGC	1 cut(s)	249
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	1 cut(s)	186
BmgT120I	GGNCC	2 cut(s)	165, 186
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	2 cut(s)	16, 295
BpmI	CTGGAG	1 cut(s)	127
Bpu14I	TTCGAA	1 cut(s)	222
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bse1I	ACTGG	3 cut(s)	20, 104, 144
BseBI	CCWGG	1 cut(s)	163
BseGI	GGATG	1 cut(s)	117
BseMII	CTCAG	5 cut(s)	189, 269, 281, 309, 323
BseNI	ACTGG	3 cut(s)	20, 104, 144
BseRI	GAGGAG	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	166
BsiHKAI	GWGCWC	3 cut(s)	143, 296, 338
BsmAI	GTCTC	1 cut(s)	217
BsnI	GGCC	1 cut(s)	166
Bsp119I	TTCGAA	1 cut(s)	222
Bsp1286I	GDGCHC	3 cut(s)	143, 296, 338
Bsp143I	GATC	6 cut(s)	18, 69, 102, 126, 274, 314
Bsp68I	TCGCGA	1 cut(s)	12
BspACI	CCGC	1 cut(s)	247
BspANI	GGCC	1 cut(s)	166
BspCNI	CTCAG	5 cut(s)	188, 270, 282, 310, 324
BspFNI	CGCG	1 cut(s)	12
BspPI	GGATC	4 cut(s)	26, 77, 110, 322
BspT104I	TTCGAA	1 cut(s)	222
BsrI	ACTGG	3 cut(s)	20, 104, 144
BssMI	GATC	6 cut(s)	18, 69, 102, 126, 274, 314
Bst2UI	CCWGG	1 cut(s)	163
Bst6I	CTCTTC	2 cut(s)	92, 245
BstBI	TTCGAA	1 cut(s)	222
BstDEI	CTNAG	5 cut(s)	175, 278, 290, 318, 332
BstF5I	GGATG	1 cut(s)	117
BstFNI	CGCG	1 cut(s)	12
BstKTI	GATC	6 cut(s)	21, 72, 105, 129, 277, 317
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	6 cut(s)	18, 69, 102, 126, 274, 314
BstNI	CCWGG	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	161
BstUI	CGCG	1 cut(s)	12
BstX2I	RGATCY	5 cut(s)	18, 69, 126, 274, 314
BstYI	RGATCY	5 cut(s)	18, 69, 126, 274, 314
BsuRI	GGCC	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	151
BtuMI	TCGCGA	1 cut(s)	12
CaiI	CAGNNNCTG	1 cut(s)	317
Cfr13I	GGNCC	2 cut(s)	165, 186
CseI	GACGC	1 cut(s)	55
CviJI	RGCY	5 cut(s)	141, 166, 250, 294, 336
CviKI_1	RGCY	5 cut(s)	141, 166, 250, 294, 336
DdeI	CTNAG	5 cut(s)	175, 278, 290, 318, 332
DpnI	GATC	6 cut(s)	20, 71, 104, 128, 276, 316
DpnII	GATC	6 cut(s)	18, 69, 102, 126, 274, 314
DrdI	GACNNNNNNGTC	2 cut(s)	179, 209
DseDI	GACNNNNNNGTC	2 cut(s)	179, 209
Eam1104I	CTCTTC	2 cut(s)	92, 245
EarI	CTCTTC	2 cut(s)	92, 245
Ecl136II	GAGCTC	3 cut(s)	141, 294, 336
Eco24I	GRGCYC	3 cut(s)	143, 296, 338
Eco47I	GGWCC	1 cut(s)	186
Eco53kI	GAGCTC	3 cut(s)	141, 294, 336
EcoICRI	GAGCTC	3 cut(s)	141, 294, 336
EcoRII	CCWGG	1 cut(s)	161
EcoT38I	GRGCYC	3 cut(s)	143, 296, 338
FaiI	YATR	2 cut(s)	135, 328
Fnu4HI	GCNGC	1 cut(s)	248
FokI	GGATG	1 cut(s)	104
FriOI	GRGCYC	3 cut(s)	143, 296, 338
Fsp4HI	GCNGC	1 cut(s)	248
GluI	GCNGC	1 cut(s)	248
GsuI	CTGGAG	1 cut(s)	127
HaeIII	GGCC	1 cut(s)	166
HgaI	GACGC	1 cut(s)	55
HinfI	GANTC	4 cut(s)	38, 77, 173, 304
Hpy188I	TCNGA	7 cut(s)	25, 45, 279, 291, 319, 333, 340
Hpy188III	TCNNGA	3 cut(s)	11, 121, 312
Hpy99I	CGWCG	2 cut(s)	49, 206
HpyAV	CCTTC	2 cut(s)	218, 229
HpyCH4V	TGCA	3 cut(s)	29, 286, 326
HpyF3I	CTNAG	5 cut(s)	175, 278, 290, 318, 332
Kzo9I	GATC	6 cut(s)	18, 69, 102, 126, 274, 314
LmnI	GCTCC	3 cut(s)	146, 299, 341
LweI	GCATC	2 cut(s)	16, 295
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	6 cut(s)	20, 71, 104, 128, 276, 316
MboI	GATC	6 cut(s)	18, 69, 102, 126, 274, 314
MboII	GAAGA	3 cut(s)	79, 136, 232
MflI	RGATCY	5 cut(s)	18, 69, 126, 274, 314
MhlI	GDGCHC	3 cut(s)	143, 296, 338
MluCI	AATT	1 cut(s)	298
MlyI	GAGTC	2 cut(s)	71, 167
MmeI	TCCRAC	2 cut(s)	68, 258
MnlI	CCTC	4 cut(s)	95, 101, 248, 267
MspR9I	CCNGG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	163
MvnI	CGCG	1 cut(s)	12
NdeII	GATC	6 cut(s)	18, 69, 102, 126, 274, 314
NmuCI	GTSAC	1 cut(s)	95
NruI	TCGCGA	1 cut(s)	12
NspV	TTCGAA	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	38, 304
PflFI	GACNNNGTC	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	249
PleI	GAGTC	2 cut(s)	71, 167
PpsI	GAGTC	2 cut(s)	71, 167
Psp124BI	GAGCTC	3 cut(s)	143, 296, 338
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspPI	GGNCC	2 cut(s)	165, 186
PstNI	CAGNNNCTG	1 cut(s)	317
PsuI	RGATCY	5 cut(s)	18, 69, 126, 274, 314
PsyI	GACNNNGTC	1 cut(s)	209
RruI	TCGCGA	1 cut(s)	12
SacI	GAGCTC	3 cut(s)	143, 296, 338
SatI	GCNGC	1 cut(s)	248
Sau3AI	GATC	6 cut(s)	18, 69, 102, 126, 274, 314
Sau96I	GGNCC	2 cut(s)	165, 186
SchI	GAGTC	2 cut(s)	71, 167
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	3 cut(s)	143, 296, 338
SetI	ASST	7 cut(s)	143, 164, 181, 240, 259, 296, 338
SfaNI	GCATC	2 cut(s)	16, 295
SfuI	TTCGAA	1 cut(s)	222
SinI	GGWCC	1 cut(s)	186
Sse9I	AATT	1 cut(s)	298
SsiI	CCGC	1 cut(s)	247
SstI	GAGCTC	3 cut(s)	143, 296, 338
StyD4I	CCNGG	1 cut(s)	161
TaqI	TCGA	2 cut(s)	222, 253
TasI	AATT	1 cut(s)	298
TauI	GCSGC	1 cut(s)	250
TfiI	GAWTC	2 cut(s)	38, 304
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	1 cut(s)	95
Tsp45I	GTSAC	1 cut(s)	95
TspRI	CASTG	1 cut(s)	151
Tth111I	GACNNNGTC	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.