Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005631

Physical Location & Seq

Genomic Coordinates Forward (+)

822415 .. 823176

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g01380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGAGATCGATAGCATGAAGGACGTCACTGCTGGTCAGAAGAAAGTCAAGTGGTTCGAGAATCCAGAGATCCTCCAAATACTGAAGACGTATATAATTTACATGTTTGATCCTTGGCTGAACGAAGATGGCATGCCTGACGCCACCTCTCTCTTCAGCCGTTGCCCTAGAGGCTTTGCCATGGTTTCCTCTGCCTTGCTCCACTCCTCGTACGGCTCCGGCGTCTGGTCCAAGAAGGAGTGGGTCATCCCTGAGATTGACATCGACGACACCGTTTTGACGTTCGAGGGGAACTCCAACTTCTTCTGGGCGGACCGCGAGCGGCAAGCTCGCGAGGCGGTGGAGAATTCAAAGTCGGATTTGCAGATTGGTGAGTCTGCAGGTCCACAATGTAAAGCTGCACTTCAAGAAACTACTCGTATCATTGAACAAAGTCTTACAACTAATGGAAAAGCAATAAGGCGTTGTTTGGTGCAAACCAGGTTGGAATTTCACACTTTGCACCCACCATTTGTAAATCATGAGTCCAGTTCCCACCGGTGGGATTTTTTTTTTTTTTCACTTGTCACTTGCATATTGACCAAGTTTGTGTGCAGCTTGATATTGATGGTGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008239 GO:0009553 GO:0009561 GO:0016787 GO:0019538 GO:0032501 GO:0032502 GO:0043170 GO:0044238 GO:0048229 GO:0048856 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

206

Amino Acids

23.51

Weight (kDa)

5.56

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72810
fragaria_vesca	FvH4_6g34290
malus_domestica	MD02G1014500.v1.1 MD09G1187000.v1.1 MD17G1171300.v1.1
prunus_persica	Prupe.3G044400_v2.0.a1 Prupe.6G348900_v2.0.a1
pyrus_communis	pycom02g01320 pycom02g01380 pycom09g10360
rosa_chinensis	RchiOBHm_Chr2g0144621
rosa_laevigata	RLG00000020095
rosa_multiflora	Rmu_co8042306.1_g000001 Rmu_sc0009300.1_g000001
rosa_rugosa	Rorug02G0388200 Rorug05G0056000
rosa_samantha	Rh2AG440200 Rh2BG450100 Rh2BG450600 Rh2CG427300 Rh2DG460000 Rh2DG460600 Rh4BG120100 Rh5BG145500 Rh5BG145600 Rh6AG467600 Rh7CG089000
rosa_wichuraiana	Rw2G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	27
Acc36I	ACCTGC	1 cut(s)	371
AccBSI	CCGCTC	1 cut(s)	322
AccII	CGCG	2 cut(s)	318, 333
AciI	CCGC	4 cut(s)	311, 316, 322, 338
AclWI	GGATC	2 cut(s)	64, 104
AcsI	RAATTY	2 cut(s)	346, 488
AcuI	CTGAAG	2 cut(s)	104, 139
AcyI	GRCGYC	3 cut(s)	24, 141, 222
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	3 cut(s)	225, 540, 541
AflIII	ACRYGT	1 cut(s)	102
AgeI	ACCGGT	1 cut(s)	537
AgsI	TTSAA	3 cut(s)	351, 407, 428
AjnI	CCWGG	1 cut(s)	479
AluBI	AGCT	3 cut(s)	329, 398, 597
AluI	AGCT	3 cut(s)	329, 398, 597
AlwI	GGATC	2 cut(s)	64, 104
ApeKI	GCWGC	2 cut(s)	398, 594
ApoI	RAATTY	2 cut(s)	346, 488
AsiGI	ACCGGT	1 cut(s)	537
AspS9I	GGNCC	3 cut(s)	228, 313, 383
AsuHPI	GGTGA	1 cut(s)	383
AvaII	GGWCC	3 cut(s)	228, 313, 383
BbsI	GAAGAC	1 cut(s)	92
BbvI	GCAGC	2 cut(s)	385, 606
BccI	CCATC	2 cut(s)	122, 601
BceAI	ACGGC	2 cut(s)	144, 229
BciT130I	CCWGG	1 cut(s)	481
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	378
BfuAI	ACCTGC	1 cut(s)	371
BglI	GCCNNNNNGGC	1 cut(s)	171
BisI	GCNGC	3 cut(s)	323, 399, 595
BlsI	GCNGC	3 cut(s)	324, 400, 596
Bme1390I	CCNGG	1 cut(s)	481
Bme18I	GGWCC	3 cut(s)	228, 313, 383
BmgT120I	GGNCC	3 cut(s)	228, 313, 383
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	481
BpiI	GAAGAC	1 cut(s)	92
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
Bsa29I	ATCGAT	1 cut(s)	9
BsaBI	GATNNNNATC	1 cut(s)	260
BsaHI	GRCGYC	3 cut(s)	24, 141, 222
BsaJI	CCNNGG	2 cut(s)	113, 180
BsaWI	WCCGGW	1 cut(s)	537
Bsc4I	CCNNNNNNNGG	3 cut(s)	225, 540, 541
Bse118I	RCCGGY	1 cut(s)	537
Bse1I	ACTGG	1 cut(s)	528
Bse8I	GATNNNNATC	1 cut(s)	260
BseBI	CCWGG	1 cut(s)	481
BseCI	ATCGAT	1 cut(s)	9
BseDI	CCNNGG	2 cut(s)	113, 180
BseGI	GGATG	1 cut(s)	246
BseJI	GATNNNNATC	1 cut(s)	260
BseLI	CCNNNNNNNGG	3 cut(s)	225, 540, 541
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	528
BseRI	GAGGAG	1 cut(s)	196
BseXI	GCAGC	2 cut(s)	385, 606
BsgI	GTGCAG	2 cut(s)	384, 613
Bsh1236I	CGCG	2 cut(s)	318, 333
BshTI	ACCGGT	1 cut(s)	537
BshVI	ATCGAT	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	219, 538
BsiWI	CGTACG	1 cut(s)	210
BslI	CCNNNNNNNGG	3 cut(s)	225, 540, 541
Bsp143I	GATC	3 cut(s)	6, 69, 109
Bsp19I	CCATGG	1 cut(s)	180
Bsp68I	TCGCGA	1 cut(s)	333
BspACI	CCGC	4 cut(s)	311, 316, 322, 338
BspCNI	CTCAG	1 cut(s)	244
BspDI	ATCGAT	1 cut(s)	9
BspFNI	CGCG	2 cut(s)	318, 333
BspHI	TCATGA	1 cut(s)	520
BspLI	GGNNCC	1 cut(s)	217
BspMAI	CTGCAG	1 cut(s)	382
BspMI	ACCTGC	1 cut(s)	371
BspPI	GGATC	2 cut(s)	64, 104
BsrBI	CCGCTC	1 cut(s)	322
BsrFI	RCCGGY	1 cut(s)	537
BsrI	ACTGG	1 cut(s)	528
BssAI	RCCGGY	1 cut(s)	537
BssECI	CCNNGG	2 cut(s)	113, 180
BssMI	GATC	3 cut(s)	6, 69, 109
BssNI	GRCGYC	3 cut(s)	24, 141, 222
BssT1I	CCWWGG	2 cut(s)	113, 180
Bst2UI	CCWGG	1 cut(s)	481
Bst4CI	ACNGT	1 cut(s)	274
Bst6I	CTCTTC	1 cut(s)	158
BstACI	GRCGYC	3 cut(s)	24, 141, 222
BstC8I	GCNNGC	4 cut(s)	134, 320, 327, 331
BstDEI	CTNAG	1 cut(s)	252
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	246
BstFNI	CGCG	2 cut(s)	318, 333
BstKTI	GATC	3 cut(s)	9, 72, 112
BstMBI	GATC	3 cut(s)	6, 69, 109
BstMWI	GCNNNNNNNGC	2 cut(s)	171, 335
BstNI	CCWGG	1 cut(s)	481
BstNSI	RCATGY	2 cut(s)	106, 136
BstSCI	CCNGG	1 cut(s)	479
BstSFI	CTRYAG	1 cut(s)	378
BstUI	CGCG	2 cut(s)	318, 333
BstV1I	GCAGC	2 cut(s)	385, 606
BstV2I	GAAGAC	1 cut(s)	92
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
Bsu15I	ATCGAT	1 cut(s)	9
BsuTUI	ATCGAT	1 cut(s)	9
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	246
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	27
BtuMI	TCGCGA	1 cut(s)	333
BveI	ACCTGC	1 cut(s)	371
Cac8I	GCNNGC	4 cut(s)	134, 320, 327, 331
CciI	TCATGA	1 cut(s)	520
Cfr10I	RCCGGY	1 cut(s)	537
Cfr13I	GGNCC	3 cut(s)	228, 313, 383
ClaI	ATCGAT	1 cut(s)	9
CpoI	CGGWCCG	1 cut(s)	313
CseI	GACGC	2 cut(s)	149, 211
CsiI	ACCWGGT	1 cut(s)	479
Csp6I	GTAC	1 cut(s)	211
CspAI	ACCGGT	1 cut(s)	537
CspI	CGGWCCG	1 cut(s)	313
CviAII	CATG	5 cut(s)	16, 103, 133, 181, 521
CviJI	RGCY	7 cut(s)	118, 159, 174, 216, 329, 398, 597
CviKI_1	RGCY	7 cut(s)	118, 159, 174, 216, 329, 398, 597
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	3 cut(s)	8, 71, 111
DpnII	GATC	3 cut(s)	6, 69, 109
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
EciI	GGCGGA	1 cut(s)	326
Eco130I	CCWWGG	2 cut(s)	113, 180
Eco47I	GGWCC	3 cut(s)	228, 313, 383
Eco57I	CTGAAG	2 cut(s)	104, 139
EcoRI	GAATTC	1 cut(s)	346
EcoRII	CCWGG	1 cut(s)	479
EcoT14I	CCWWGG	2 cut(s)	113, 180
ErhI	CCWWGG	2 cut(s)	113, 180
FaeI	CATG	5 cut(s)	19, 106, 136, 184, 524
FaiI	YATR	8 cut(s)	17, 93, 95, 104, 134, 182, 522, 575
FalI	AAGNNNNNCTT	2 cut(s)	387, 419
FatI	CATG	5 cut(s)	15, 102, 132, 180, 520
Fnu4HI	GCNGC	3 cut(s)	323, 399, 595
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	3 cut(s)	323, 399, 595
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	3 cut(s)	323, 399, 595
HapII	CCGG	2 cut(s)	219, 538
HgaI	GACGC	2 cut(s)	149, 211
Hin1I	GRCGYC	3 cut(s)	24, 141, 222
Hin1II	CATG	5 cut(s)	19, 106, 136, 184, 524
HinfI	GANTC	3 cut(s)	61, 374, 524
HpaII	CCGG	2 cut(s)	219, 538
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	2 cut(s)	39, 358
Hpy188III	TCNNGA	5 cut(s)	58, 65, 332, 407, 521
Hpy8I	GTNNAC	1 cut(s)	386
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	2 cut(s)	13, 229
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	3 cut(s)	24, 89, 281
HpyCH4V	TGCA	7 cut(s)	364, 380, 401, 475, 502, 573, 594
HpyF10VI	GCNNNNNNNGC	2 cut(s)	171, 335
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	3 cut(s)	24, 89, 281
Hsp92I	GRCGYC	3 cut(s)	24, 141, 222
Hsp92II	CATG	5 cut(s)	19, 106, 136, 184, 524
Kzo9I	GATC	3 cut(s)	6, 69, 109
LmnI	GCTCC	2 cut(s)	204, 221
Lsp1109I	GCAGC	2 cut(s)	385, 606
MabI	ACCWGGT	1 cut(s)	479
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	3 cut(s)	24, 89, 281
MaeIII	GTNAC	3 cut(s)	25, 565, 610
MalI	GATC	3 cut(s)	8, 71, 111
MbiI	CCGCTC	1 cut(s)	322
MboI	GATC	3 cut(s)	6, 69, 109
MboII	GAAGA	5 cut(s)	52, 97, 137, 145, 295
MflI	RGATCY	1 cut(s)	69
MluCI	AATT	3 cut(s)	96, 346, 488
MlyI	GAGTC	2 cut(s)	383, 533
MmeI	TCCRAC	3 cut(s)	321, 336, 465
MnlI	CCTC	7 cut(s)	83, 157, 164, 199, 217, 280, 328
MseI	TTAA	1 cut(s)	616
MspI	CCGG	2 cut(s)	219, 538
MspR9I	CCNGG	1 cut(s)	481
MvaI	CCWGG	1 cut(s)	481
MvnI	CGCG	2 cut(s)	318, 333
MwoI	GCNNNNNNNGC	2 cut(s)	171, 335
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	3 cut(s)	6, 69, 109
NlaIII	CATG	5 cut(s)	19, 106, 136, 184, 524
NlaIV	GGNNCC	1 cut(s)	217
NmuCI	GTSAC	3 cut(s)	25, 565, 610
NruI	TCGCGA	1 cut(s)	333
NspI	RCATGY	2 cut(s)	106, 136
PaeI	GCATGC	1 cut(s)	136
PagI	TCATGA	1 cut(s)	520
PciI	ACATGT	1 cut(s)	102
PcsI	WCGNNNNNNNCGW	2 cut(s)	219, 270
PfeI	GAWTC	1 cut(s)	61
Pfl23II	CGTACG	1 cut(s)	210
PinAI	ACCGGT	1 cut(s)	537
PkrI	GCNGC	3 cut(s)	324, 400, 596
PleI	GAGTC	2 cut(s)	382, 532
PpsI	GAGTC	2 cut(s)	382, 532
PscI	ACATGT	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	479
PspLI	CGTACG	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	3 cut(s)	228, 313, 383
PstI	CTGCAG	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	69
RruI	TCGCGA	1 cut(s)	333
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
Rsr2I	CGGWCCG	1 cut(s)	313
RsrII	CGGWCCG	1 cut(s)	313
SaqAI	TTAA	1 cut(s)	616
SatI	GCNGC	3 cut(s)	323, 399, 595
Sau3AI	GATC	3 cut(s)	6, 69, 109
Sau96I	GGNCC	3 cut(s)	228, 313, 383
SchI	GAGTC	2 cut(s)	383, 533
ScrFI	CCNGG	1 cut(s)	481
SetI	ASST	9 cut(s)	27, 92, 149, 284, 331, 385, 400, 485, 599
SexAI	ACCWGGT	1 cut(s)	479
SfcI	CTRYAG	1 cut(s)	378
SgrAI	CRCCGGYG	1 cut(s)	537
SinI	GGWCC	3 cut(s)	228, 313, 383
SphI	GCATGC	1 cut(s)	136
Sse9I	AATT	3 cut(s)	96, 346, 488
SsiI	CCGC	4 cut(s)	311, 316, 322, 338
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	479
StyI	CCWWGG	2 cut(s)	113, 180
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	3 cut(s)	27, 92, 284
TaqI	TCGA	4 cut(s)	9, 57, 264, 285
TasI	AATT	3 cut(s)	96, 346, 488
TauI	GCSGC	1 cut(s)	325
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	616
Tru9I	TTAA	1 cut(s)	616
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	3 cut(s)	25, 565, 610
TseI	GCWGC	2 cut(s)	398, 594
Tsp45I	GTSAC	3 cut(s)	25, 565, 610
TspDTI	ATGAA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	34
VpaK11BI	GGWCC	3 cut(s)	228, 313, 383
XapI	RAATTY	2 cut(s)	346, 488
XceI	RCATGY	2 cut(s)	106, 136
XspI	CTAG	1 cut(s)	168
ZraI	GACGTC	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.