Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005631

Physical Location & Seq

Genomic Coordinates Forward (+)

49510228 .. 49511427

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0388200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGAGGATGGAGACTAGCGGCGAGGCTCTTTGGCGGGGATCTGGCTCGGGGAAGGAGGTCGACTGCTTTGTCTTGGATCGGGGCGGTTCTTCCAGATCGGATTCTTCTCTCCGTCGTGCGTGGGTGGGTGCTGGCAGGGATTCCTGGAAGCGTGGTCCACGGTGGGTGGAGACTGGGTCGATCTGGGTTTGGGTGGATCTGAGGTCGATGACGTGGGTTTGCAGGCATGGTTCCGTGTTGTTTCTGGGGCAGTCGGAGTGGCTCTGGGACACGGCTGGGGCGTTGCAGCGACGTTGGGTTAGAAGGTGGGTGGAGACTGGTTCGATCTGGGATTGGGTGGATCTGAGTTCGATCTGGGTTAGGGTTAGGACGTGGGTCTGCAGGCGTGGTTCCGTGTTGTTTCTGGGGCAGTTGGAGTGGCTCTGGGACACGGATGGGGCTTTGCAGGACACAATTTGCTGGCTGCTTCTGGCGTGCAGTCACCGGAGGCATCCTTGGGGGCGGTGGTGGTTTTGGGTCTTTCTAACCTCAAATAAGTCCCTTCTCTTTCGAGTAAGGGTAGTTTGGAGTGGCCTCTGTGCCGGTATGTCTTATGCCTGGTCTGCTCTAGGTTGGTGGCGAGCTACTTGCTTTGTCAAATGGTCGTTGCCTCCTAGTGGTAGGTGGAAACCTAGTGTCGCTGGATGTTTTTTCCAGCGGCAACATGATGGGAAATCTGTTTTTATGGAAATTATGCTAAGCTGTAATCGCGTTACAGATCAGGTTATTTTTCCGTCGTGTCACCGTTATGTCAAAGCAATTCGAGATGCCAGTAGTGCGCTCGTTGCTAGTTGGTGCTTTTTCGGATACATGTTTGTAGTTGAGGCTCCTGGTATTATCTCAGGAAGTTTTCTTGATGTACTTTGTTATTTGGGGTTTAGGTCTCATGTCCCCCCCATGTATTCCATGGTTTCATTAATGAAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004795 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008144 GO:0016829 GO:0016835 GO:0016838 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044464 GO:0048037 GO:0050662 GO:0070279 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00750 ko01100 ko01110 ko01120 ko01230 map00260 map00750 map01100 map01110 map01120 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

322

Amino Acids

37.3

Weight (kDa)

9.65

Isoelectric Point (pI)

50.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72810
fragaria_vesca	FvH4_6g34290
malus_domestica	MD02G1014500.v1.1 MD09G1187000.v1.1 MD17G1171300.v1.1
prunus_persica	Prupe.3G044400_v2.0.a1 Prupe.6G348900_v2.0.a1
pyrus_communis	pycom02g01320 pycom02g01380 pycom09g10360
rosa_chinensis	RchiOBHm_Chr2g0144621
rosa_laevigata	RLG00000020095
rosa_multiflora	Rmu_co8042306.1_g000001 Rmu_sc0009300.1_g000001
rosa_rugosa	Rorug02G0388200 Rorug05G0056000
rosa_samantha	Rh2AG440200 Rh2BG450100 Rh2BG450600 Rh2CG427300 Rh2DG460000 Rh2DG460600 Rh4BG120100 Rh5BG145500 Rh5BG145600 Rh6AG467600 Rh7CG089000
rosa_wichuraiana	Rw2G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
AccI	GTMKAC	1 cut(s)	60
AccII	CGCG	1 cut(s)	750
AciI	CCGC	5 cut(s)	18, 34, 84, 502, 697
AclWI	GGATC	4 cut(s)	46, 84, 204, 348
AfaI	GTAC	1 cut(s)	900
AfiI	CCNNNNNNNGG	1 cut(s)	656
AflIII	ACRYGT	1 cut(s)	849
AjiI	CACGTC	2 cut(s)	213, 372
AjnI	CCWGG	3 cut(s)	143, 596, 868
AluBI	AGCT	2 cut(s)	623, 741
AluI	AGCT	2 cut(s)	623, 741
Alw26I	GTCTC	4 cut(s)	5, 164, 308, 927
AlwI	GGATC	4 cut(s)	46, 84, 204, 348
Ama87I	CYCGRG	1 cut(s)	46
AoxI	GGCC	1 cut(s)	571
ApeKI	GCWGC	2 cut(s)	286, 463
AseI	ATTAAT	1 cut(s)	956
AspLEI	GCGC	1 cut(s)	820
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	2 cut(s)	473, 773
AvaI	CYCGRG	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	155
BbvI	GCAGC	2 cut(s)	298, 450
BccI	CCATC	2 cut(s)	428, 701
BceAI	ACGGC	1 cut(s)	288
BcgI	CGANNNNNNTGC	2 cut(s)	609, 643
BciT130I	CCWGG	3 cut(s)	145, 598, 870
BciVI	GTATCC	1 cut(s)	839
BcoDI	GTCTC	4 cut(s)	5, 164, 308, 927
BfaI	CTAG	5 cut(s)	15, 608, 654, 672, 828
BfmI	CTRYAG	1 cut(s)	379
BfuI	GTATCC	1 cut(s)	839
BisI	GCNGC	4 cut(s)	19, 287, 464, 698
BlpI	GCTNAGC	1 cut(s)	737
BlsI	GCNGC	4 cut(s)	20, 288, 465, 699
Bme1390I	CCNGG	3 cut(s)	145, 598, 870
Bme18I	GGWCC	1 cut(s)	155
BmeT110I	CYCGRG	1 cut(s)	46
BmgBI	CACGTC	2 cut(s)	213, 372
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	3 cut(s)	232, 391, 867
BmrFI	CCNGG	3 cut(s)	145, 598, 870
BmrI	ACTGGG	1 cut(s)	183
BmsI	GCATC	2 cut(s)	499, 796
BmuI	ACTGGG	1 cut(s)	183
BoxI	GACNNNNGTC	1 cut(s)	374
Bpu1102I	GCTNAGC	1 cut(s)	737
BsaI	GGTCTC	1 cut(s)	927
BsaJI	CCNNGG	3 cut(s)	158, 494, 945
BsaWI	WCCGGW	1 cut(s)	483
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	1 cut(s)	656
Bse118I	RCCGGY	1 cut(s)	581
Bse1I	ACTGG	3 cut(s)	178, 322, 810
BseBI	CCWGG	3 cut(s)	145, 598, 870
BseDI	CCNNGG	3 cut(s)	158, 494, 945
BseGI	GGATG	4 cut(s)	12, 439, 490, 689
BseLI	CCNNNNNNNGG	1 cut(s)	656
BseMII	CTCAG	3 cut(s)	191, 335, 894
BseNI	ACTGG	3 cut(s)	178, 322, 810
BseXI	GCAGC	2 cut(s)	298, 450
BseYI	CCCAGC	1 cut(s)	275
BsgI	GTGCAG	1 cut(s)	496
Bsh1236I	CGCG	1 cut(s)	750
BshFI	GGCC	1 cut(s)	573
BsiHKCI	CYCGRG	1 cut(s)	46
BsiSI	CCGG	2 cut(s)	484, 582
BslFI	GGGAC	4 cut(s)	281, 440, 523, 914
BslI	CCNNNNNNNGG	1 cut(s)	656
BsmAI	GTCTC	4 cut(s)	5, 164, 308, 927
BsmFI	GGGAC	4 cut(s)	281, 440, 523, 914
BsnI	GGCC	1 cut(s)	573
Bso31I	GGTCTC	1 cut(s)	927
BsoBI	CYCGRG	1 cut(s)	46
Bsp143I	GATC	9 cut(s)	38, 76, 95, 180, 196, 324, 340, 351, 757
Bsp1720I	GCTNAGC	1 cut(s)	737
Bsp19I	CCATGG	1 cut(s)	945
BspACI	CCGC	5 cut(s)	18, 34, 84, 502, 697
BspANI	GGCC	1 cut(s)	573
BspCNI	CTCAG	3 cut(s)	192, 336, 893
BspFNI	CGCG	1 cut(s)	750
BspLI	GGNNCC	3 cut(s)	232, 391, 867
BspMAI	CTGCAG	1 cut(s)	383
BspPI	GGATC	4 cut(s)	46, 84, 204, 348
BspTNI	GGTCTC	1 cut(s)	927
BsrFI	RCCGGY	1 cut(s)	581
BsrI	ACTGG	3 cut(s)	178, 322, 810
BssAI	RCCGGY	1 cut(s)	581
BssECI	CCNNGG	3 cut(s)	158, 494, 945
BssMI	GATC	9 cut(s)	38, 76, 95, 180, 196, 324, 340, 351, 757
BssT1I	CCWWGG	2 cut(s)	494, 945
Bst2UI	CCWGG	3 cut(s)	145, 598, 870
Bst4CI	ACNGT	2 cut(s)	162, 785
BstC8I	GCNNGC	6 cut(s)	133, 224, 383, 461, 475, 621
BstDEI	CTNAG	4 cut(s)	200, 344, 737, 880
BstDSI	CCRYGG	2 cut(s)	158, 945
BstF5I	GGATG	4 cut(s)	12, 439, 490, 689
BstFNI	CGCG	1 cut(s)	750
BstHHI	GCGC	1 cut(s)	820
BstKTI	GATC	9 cut(s)	41, 79, 98, 183, 199, 327, 343, 354, 760
BstMAI	GTCTC	4 cut(s)	5, 164, 308, 927
BstMBI	GATC	9 cut(s)	38, 76, 95, 180, 196, 324, 340, 351, 757
BstMWI	GCNNNNNNNGC	4 cut(s)	602, 747, 815, 824
BstNI	CCWGG	3 cut(s)	145, 598, 870
BstNSI	RCATGY	1 cut(s)	853
BstPAI	GACNNNNGTC	1 cut(s)	374
BstSCI	CCNGG	3 cut(s)	143, 596, 868
BstSFI	CTRYAG	1 cut(s)	379
BstUI	CGCG	1 cut(s)	750
BstV1I	GCAGC	2 cut(s)	298, 450
BstX2I	RGATCY	3 cut(s)	38, 196, 340
BstYI	RGATCY	3 cut(s)	38, 196, 340
BsuI	GTATCC	1 cut(s)	839
BsuRI	GGCC	1 cut(s)	573
BtgI	CCRYGG	2 cut(s)	158, 945
BtrI	CACGTC	2 cut(s)	213, 372
BtsCI	GGATG	4 cut(s)	12, 439, 490, 689
Cac8I	GCNNGC	6 cut(s)	133, 224, 383, 461, 475, 621
CfoI	GCGC	1 cut(s)	820
Cfr10I	RCCGGY	1 cut(s)	581
Cfr13I	GGNCC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	899
CviAII	CATG	6 cut(s)	227, 704, 850, 926, 937, 946
CviQI	GTAC	1 cut(s)	899
DdeI	CTNAG	4 cut(s)	200, 344, 737, 880
DpnI	GATC	9 cut(s)	40, 78, 97, 182, 198, 326, 342, 353, 759
DpnII	GATC	9 cut(s)	38, 76, 95, 180, 196, 324, 340, 351, 757
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
Eco130I	CCWWGG	2 cut(s)	494, 945
Eco31I	GGTCTC	1 cut(s)	927
Eco47I	GGWCC	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	46
EcoRII	CCWGG	3 cut(s)	143, 596, 868
EcoT14I	CCWWGG	2 cut(s)	494, 945
ErhI	CCWWGG	2 cut(s)	494, 945
FaeI	CATG	6 cut(s)	230, 707, 853, 929, 940, 949
FaqI	GGGAC	4 cut(s)	281, 440, 523, 914
FatI	CATG	6 cut(s)	226, 703, 849, 925, 936, 945
FauI	CCCGC	1 cut(s)	27
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	4 cut(s)	19, 287, 464, 698
FokI	GGATG	4 cut(s)	19, 446, 477, 696
Fsp4HI	GCNGC	4 cut(s)	19, 287, 464, 698
FspBI	CTAG	5 cut(s)	15, 608, 654, 672, 828
GlaI	GCGC	1 cut(s)	819
GluI	GCNGC	4 cut(s)	19, 287, 464, 698
GsaI	CCCAGC	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	573
HapII	CCGG	2 cut(s)	484, 582
HhaI	GCGC	1 cut(s)	820
Hin1II	CATG	6 cut(s)	230, 707, 853, 929, 940, 949
Hin6I	GCGC	1 cut(s)	818
HinP1I	GCGC	1 cut(s)	818
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	2 cut(s)	101, 140
HpaII	CCGG	2 cut(s)	484, 582
HphI	GGTGA	2 cut(s)	473, 773
Hpy166II	GTNNAC	2 cut(s)	61, 158
Hpy188I	TCNGA	5 cut(s)	100, 201, 256, 345, 845
Hpy188III	TCNNGA	4 cut(s)	93, 803, 882, 893
Hpy8I	GTNNAC	2 cut(s)	61, 158
Hpy99I	CGWCG	3 cut(s)	117, 294, 778
HpyAV	CCTTC	4 cut(s)	46, 297, 551, 955
HpyCH4III	ACNGT	2 cut(s)	162, 785
HpyCH4IV	ACGT	3 cut(s)	212, 292, 371
HpyCH4V	TGCA	5 cut(s)	222, 286, 381, 445, 477
HpyF10VI	GCNNNNNNNGC	4 cut(s)	602, 747, 815, 824
HpyF3I	CTNAG	4 cut(s)	200, 344, 737, 880
HpySE526I	ACGT	3 cut(s)	212, 292, 371
Hsp92II	CATG	6 cut(s)	230, 707, 853, 929, 940, 949
HspAI	GCGC	1 cut(s)	818
Kzo9I	GATC	9 cut(s)	38, 76, 95, 180, 196, 324, 340, 351, 757
LmnI	GCTCC	1 cut(s)	871
Lsp1109I	GCAGC	2 cut(s)	298, 450
LweI	GCATC	2 cut(s)	499, 796
MaeI	CTAG	5 cut(s)	15, 608, 654, 672, 828
MaeII	ACGT	3 cut(s)	212, 292, 371
MaeIII	GTNAC	3 cut(s)	479, 751, 779
MalI	GATC	9 cut(s)	40, 78, 97, 182, 198, 326, 342, 353, 759
MboI	GATC	9 cut(s)	38, 76, 95, 180, 196, 324, 340, 351, 757
MboII	GAAGA	2 cut(s)	81, 96
MflI	RGATCY	3 cut(s)	38, 196, 340
MluCI	AATT	3 cut(s)	453, 729, 798
MmeI	TCCRAC	2 cut(s)	234, 393
MnlI	CCTC	8 cut(s)	16, 49, 195, 480, 538, 584, 660, 856
MseI	TTAA	2 cut(s)	956, 967
MslI	CAYNNNNRTG	1 cut(s)	786
MspA1I	CMGCKG	1 cut(s)	697
MspI	CCGG	2 cut(s)	484, 582
MspR9I	CCNGG	3 cut(s)	145, 598, 870
MvaI	CCWGG	3 cut(s)	145, 598, 870
MvnI	CGCG	1 cut(s)	750
MwoI	GCNNNNNNNGC	4 cut(s)	602, 747, 815, 824
NcoI	CCATGG	1 cut(s)	945
NdeII	GATC	9 cut(s)	38, 76, 95, 180, 196, 324, 340, 351, 757
NlaIII	CATG	6 cut(s)	230, 707, 853, 929, 940, 949
NlaIV	GGNNCC	3 cut(s)	232, 391, 867
NmuCI	GTSAC	2 cut(s)	479, 779
NspI	RCATGY	1 cut(s)	853
PciI	ACATGT	1 cut(s)	849
PcsI	WCGNNNNNNNCGW	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	101, 140
PflFI	GACNNNGTC	1 cut(s)	175
PfoI	TCCNGGA	1 cut(s)	143
PkrI	GCNGC	4 cut(s)	20, 288, 465, 699
PscI	ACATGT	1 cut(s)	849
PshAI	GACNNNNGTC	1 cut(s)	374
PshBI	ATTAAT	1 cut(s)	956
Psp6I	CCWGG	3 cut(s)	143, 596, 868
PspFI	CCCAGC	1 cut(s)	275
PspGI	CCWGG	3 cut(s)	143, 596, 868
PspN4I	GGNNCC	3 cut(s)	232, 391, 867
PspPI	GGNCC	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	383
PsuI	RGATCY	3 cut(s)	38, 196, 340
PsyI	GACNNNGTC	1 cut(s)	175
RsaI	GTAC	1 cut(s)	900
RsaNI	GTAC	1 cut(s)	899
RseI	CAYNNNNRTG	1 cut(s)	786
SalI	GTCGAC	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	956, 967
SatI	GCNGC	4 cut(s)	19, 287, 464, 698
Sau3AI	GATC	9 cut(s)	38, 76, 95, 180, 196, 324, 340, 351, 757
Sau96I	GGNCC	1 cut(s)	155
ScrFI	CCNGG	3 cut(s)	145, 598, 870
SfaNI	GCATC	2 cut(s)	499, 796
SfcI	CTRYAG	1 cut(s)	379
SinI	GGWCC	1 cut(s)	155
SmiMI	CAYNNNNRTG	1 cut(s)	786
Sse9I	AATT	3 cut(s)	453, 729, 798
SsiI	CCGC	5 cut(s)	18, 34, 84, 502, 697
SspMI	CTAG	5 cut(s)	15, 608, 654, 672, 828
StyD4I	CCNGG	3 cut(s)	143, 596, 868
StyI	CCWWGG	2 cut(s)	494, 945
TaaI	ACNGT	2 cut(s)	162, 785
TaiI	ACGT	3 cut(s)	215, 295, 374
TaqI	TCGA	7 cut(s)	60, 179, 206, 323, 350, 550, 802
TasI	AATT	3 cut(s)	453, 729, 798
TatI	WGTACW	1 cut(s)	898
TauI	GCSGC	2 cut(s)	21, 700
TfiI	GAWTC	2 cut(s)	101, 140
Tru1I	TTAA	2 cut(s)	956, 967
Tru9I	TTAA	2 cut(s)	956, 967
TseFI	GTSAC	2 cut(s)	479, 779
TseI	GCWGC	2 cut(s)	286, 463
Tsp45I	GTSAC	2 cut(s)	479, 779
TspDTI	ATGAA	1 cut(s)	942
TspGWI	ACGGA	5 cut(s)	101, 223, 382, 446, 762
Tth111I	GACNNNGTC	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	155
VspI	ATTAAT	1 cut(s)	956
XceI	RCATGY	1 cut(s)	853
XcmI	CCANNNNNNNNNTGG	1 cut(s)	943
XmiI	GTMKAC	1 cut(s)	60
XspI	CTAG	5 cut(s)	15, 608, 654, 672, 828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.