Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005631

Physical Location & Seq

Genomic Coordinates Forward (+)

20054618 .. 20054920

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG120100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGCTTCATCGACGACGGTCGGGGTCTCCACCATCTTCCTCCGTGACTGGATCGTCGTCGTTGTCATCCAGAAGATCTGGTATGTGAGCTCCAGTGTCGGCAAAAGCACCTGGCCCTACGACTCCGGCGTCTGGTCCAAAAACGACAGCGACGACATCGTCTCCGCCTTCGAAGGCAACTCCAACCTCTTCTCGCGGCTTCGACCTCGTTCCTACCGCCGAGATCTGAGATTGCATCTGAGCTCCGATTTGAATCCGTCAGGATCTGAGATTGCATATCTGAGCTCCGATTTGCTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004795 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008144 GO:0016829 GO:0016835 GO:0016838 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044464 GO:0048037 GO:0050662 GO:0070279 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00750 ko01100 ko01110 ko01120 ko01230 map00260 map00750 map01100 map01110 map01120 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

100

Amino Acids

11.22

Weight (kDa)

6.54

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72810
fragaria_vesca	FvH4_6g34290
malus_domestica	MD02G1014500.v1.1 MD09G1187000.v1.1 MD17G1171300.v1.1
prunus_persica	Prupe.3G044400_v2.0.a1 Prupe.6G348900_v2.0.a1
pyrus_communis	pycom02g01320 pycom02g01380 pycom09g10360
rosa_chinensis	RchiOBHm_Chr2g0144621
rosa_laevigata	RLG00000020095
rosa_multiflora	Rmu_co8042306.1_g000001 Rmu_sc0009300.1_g000001
rosa_rugosa	Rorug02G0388200 Rorug05G0056000
rosa_samantha	Rh2AG440200 Rh2BG450100 Rh2BG450600 Rh2CG427300 Rh2DG460000 Rh2DG460600 Rh4BG120100 Rh5BG145500 Rh5BG145600 Rh6AG467600 Rh7CG089000
rosa_wichuraiana	Rw2G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	53, 128, 158
AccII	CGCG	1 cut(s)	196
AciI	CCGC	3 cut(s)	165, 196, 217
AclWI	GGATC	2 cut(s)	59, 271
AcyI	GRCGYC	1 cut(s)	129
AfiI	CCNNNNNNNGG	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	3 cut(s)	90, 243, 285
AluI	AGCT	3 cut(s)	90, 243, 285
Alw21I	GWGCWC	3 cut(s)	92, 245, 287
Alw26I	GTCTC	2 cut(s)	31, 166
AlwI	GGATC	2 cut(s)	59, 271
AlwNI	CAGNNNCTG	1 cut(s)	266
AoxI	GGCC	1 cut(s)	113
AspS9I	GGNCC	2 cut(s)	114, 135
AsuII	TTCGAA	1 cut(s)	171
AvaII	GGWCC	1 cut(s)	135
BanII	GRGCYC	3 cut(s)	92, 245, 287
Bbv12I	GWGCWC	3 cut(s)	92, 245, 287
BccI	CCATC	1 cut(s)	41
BciT130I	CCWGG	1 cut(s)	112
BcoDI	GTCTC	2 cut(s)	31, 166
BglII	AGATCT	2 cut(s)	75, 223
BisI	GCNGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	198
Bme1390I	CCNGG	1 cut(s)	112
Bme18I	GGWCC	1 cut(s)	135
BmgT120I	GGNCC	2 cut(s)	114, 135
BmrFI	CCNGG	1 cut(s)	112
BmsI	GCATC	1 cut(s)	244
BoxI	GACNNNNGTC	1 cut(s)	17
BpmI	CTGGAG	1 cut(s)	76
Bpu14I	TTCGAA	1 cut(s)	171
BsaBI	GATNNNNATC	1 cut(s)	252
BsaHI	GRCGYC	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	31
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse1I	ACTGG	2 cut(s)	53, 93
Bse8I	GATNNNNATC	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	112
BseGI	GGATG	1 cut(s)	66
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseMII	CTCAG	4 cut(s)	218, 230, 258, 272
BseNI	ACTGG	2 cut(s)	53, 93
Bsh1236I	CGCG	1 cut(s)	196
Bsh1285I	CGRYCG	1 cut(s)	21
BshFI	GGCC	1 cut(s)	115
BsiEI	CGRYCG	1 cut(s)	21
BsiHKAI	GWGCWC	3 cut(s)	92, 245, 287
BsiSI	CCGG	1 cut(s)	126
BslI	CCNNNNNNNGG	1 cut(s)	132
BsmAI	GTCTC	2 cut(s)	31, 166
BsmBI	CGTCTC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	115
Bso31I	GGTCTC	1 cut(s)	31
Bsp119I	TTCGAA	1 cut(s)	171
Bsp1286I	GDGCHC	3 cut(s)	92, 245, 287
Bsp143I	GATC	4 cut(s)	51, 75, 223, 263
BspACI	CCGC	3 cut(s)	165, 196, 217
BspANI	GGCC	1 cut(s)	115
BspCNI	CTCAG	4 cut(s)	219, 231, 259, 273
BspFNI	CGCG	1 cut(s)	196
BspPI	GGATC	2 cut(s)	59, 271
BspT104I	TTCGAA	1 cut(s)	171
BspTNI	GGTCTC	1 cut(s)	31
BsrI	ACTGG	2 cut(s)	53, 93
BssMI	GATC	4 cut(s)	51, 75, 223, 263
BssNI	GRCGYC	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	19
Bst6I	CTCTTC	1 cut(s)	194
BstACI	GRCGYC	1 cut(s)	129
BstBI	TTCGAA	1 cut(s)	171
BstDEI	CTNAG	4 cut(s)	227, 239, 267, 281
BstF5I	GGATG	1 cut(s)	66
BstFNI	CGCG	1 cut(s)	196
BstKTI	GATC	4 cut(s)	54, 78, 226, 266
BstMAI	GTCTC	2 cut(s)	31, 166
BstMBI	GATC	4 cut(s)	51, 75, 223, 263
BstMCI	CGRYCG	1 cut(s)	21
BstNI	CCWGG	1 cut(s)	112
BstPAI	GACNNNNGTC	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	110
BstUI	CGCG	1 cut(s)	196
BstX2I	RGATCY	3 cut(s)	75, 223, 263
BstYI	RGATCY	3 cut(s)	75, 223, 263
BsuRI	GGCC	1 cut(s)	115
BtsCI	GGATG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	100
CaiI	CAGNNNCTG	1 cut(s)	266
Cfr13I	GGNCC	2 cut(s)	114, 135
CseI	GACGC	1 cut(s)	118
CviJI	RGCY	6 cut(s)	5, 90, 115, 199, 243, 285
CviKI_1	RGCY	6 cut(s)	5, 90, 115, 199, 243, 285
DdeI	CTNAG	4 cut(s)	227, 239, 267, 281
DpnI	GATC	4 cut(s)	53, 77, 225, 265
DpnII	GATC	4 cut(s)	51, 75, 223, 263
DrdI	GACNNNNNNGTC	3 cut(s)	53, 128, 158
DseDI	GACNNNNNNGTC	3 cut(s)	53, 128, 158
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
EciI	GGCGGA	1 cut(s)	154
Ecl136II	GAGCTC	3 cut(s)	90, 243, 285
Eco24I	GRGCYC	3 cut(s)	92, 245, 287
Eco31I	GGTCTC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	135
Eco53kI	GAGCTC	3 cut(s)	90, 243, 285
EcoICRI	GAGCTC	3 cut(s)	90, 243, 285
EcoRII	CCWGG	1 cut(s)	110
EcoT38I	GRGCYC	3 cut(s)	92, 245, 287
Esp3I	CGTCTC	1 cut(s)	166
FaiI	YATR	2 cut(s)	84, 277
Fnu4HI	GCNGC	1 cut(s)	197
FokI	GGATG	1 cut(s)	53
FriOI	GRGCYC	3 cut(s)	92, 245, 287
Fsp4HI	GCNGC	1 cut(s)	197
GluI	GCNGC	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	76
HaeIII	GGCC	1 cut(s)	115
HapII	CCGG	1 cut(s)	126
HgaI	GACGC	1 cut(s)	118
Hin1I	GRCGYC	1 cut(s)	129
HinfI	GANTC	2 cut(s)	122, 253
HpaII	CCGG	1 cut(s)	126
Hpy188I	TCNGA	6 cut(s)	228, 240, 247, 268, 282, 289
Hpy188III	TCNNGA	2 cut(s)	70, 261
Hpy99I	CGWCG	5 cut(s)	16, 19, 59, 62, 155
HpyAV	CCTTC	2 cut(s)	167, 178
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4V	TGCA	2 cut(s)	235, 275
HpyF3I	CTNAG	4 cut(s)	227, 239, 267, 281
Hsp92I	GRCGYC	1 cut(s)	129
Kzo9I	GATC	4 cut(s)	51, 75, 223, 263
LmnI	GCTCC	3 cut(s)	95, 248, 290
LpnPI	CCDG	9 cut(s)	34, 64, 83, 97, 106, 118, 124, 139, 246
LweI	GCATC	1 cut(s)	244
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	4 cut(s)	53, 77, 225, 265
MboI	GATC	4 cut(s)	51, 75, 223, 263
MboII	GAAGA	3 cut(s)	28, 85, 181
MflI	RGATCY	3 cut(s)	75, 223, 263
MhlI	GDGCHC	3 cut(s)	92, 245, 287
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	3 cut(s)	50, 197, 216
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	1 cut(s)	112
MvaI	CCWGG	1 cut(s)	112
MvnI	CGCG	1 cut(s)	196
NdeII	GATC	4 cut(s)	51, 75, 223, 263
NmeAIII	GCCGAG	1 cut(s)	245
NmuCI	GTSAC	1 cut(s)	44
NspV	TTCGAA	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	2 cut(s)	126, 150
PfeI	GAWTC	1 cut(s)	253
PflFI	GACNNNGTC	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	198
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PshAI	GACNNNNGTC	1 cut(s)	17
Psp124BI	GAGCTC	3 cut(s)	92, 245, 287
Psp6I	CCWGG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	110
PspPI	GGNCC	2 cut(s)	114, 135
PstNI	CAGNNNCTG	1 cut(s)	266
PsuI	RGATCY	3 cut(s)	75, 223, 263
PsyI	GACNNNGTC	1 cut(s)	158
SacI	GAGCTC	3 cut(s)	92, 245, 287
SatI	GCNGC	1 cut(s)	197
Sau3AI	GATC	4 cut(s)	51, 75, 223, 263
Sau96I	GGNCC	2 cut(s)	114, 135
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	112
SduI	GDGCHC	3 cut(s)	92, 245, 287
SetI	ASST	6 cut(s)	92, 113, 189, 208, 245, 287
SfaNI	GCATC	1 cut(s)	244
SfuI	TTCGAA	1 cut(s)	171
SinI	GGWCC	1 cut(s)	135
SsiI	CCGC	3 cut(s)	165, 196, 217
SstI	GAGCTC	3 cut(s)	92, 245, 287
StyD4I	CCNGG	1 cut(s)	110
TaaI	ACNGT	1 cut(s)	19
TaqI	TCGA	3 cut(s)	11, 171, 202
TauI	GCSGC	1 cut(s)	199
TfiI	GAWTC	1 cut(s)	253
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	1 cut(s)	44
Tsp45I	GTSAC	1 cut(s)	44
TspGWI	ACGGA	2 cut(s)	32, 246
TspRI	CASTG	1 cut(s)	100
Tth111I	GACNNNGTC	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.