Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005631

Physical Location & Seq

Genomic Coordinates Reverse (-)

63517531 .. 63518049

Gene Structure 519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG450100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCCGCCCTCAAGAACTACGACGGCAAGTATTGGCGCGACCTCTTTGACTCCCGCGTCGGCAAAACCACCTGGCCCTACAGCTCTCGTGTCTGGTCCAAGAAGGAGTGGGTCCTCCCTGAGATCGATAGCGACGACATCGTCTCCGCCTTCGAGGGCAACTCCAACCTCTTCTGGGCCGAGCGCTACGGTAAAACAGTCCTAGGCATGAACGAGCTCTGGGTCAAGCACTGCGGCATCAGCCACACCGGCTCCTTCAAGGACCTAGGCATGACCGTCCTCGTCAGCCAGGTCAATCGCCTCCTCAAAATGAACCGCCCCGTCGTCGGCGTCGGATGCGCCTCCACCGGCGACACCTCCGCCGCCATGTCCGCCTACTGCGCCTCTGCCGAGATCCCCTCCATTGTGTTTCTGCCGGCGAATAAGATCTCGATGGCGCAGCTGGTCCAGCCCATCGCAAACGGGGCCTTTGTGCTGAGCATCGACACCGATTTCGATGGCTGTATGAATCTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004795 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008144 GO:0016829 GO:0016835 GO:0016838 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044464 GO:0048037 GO:0050662 GO:0070279 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00750 ko01100 ko01110 ko01120 ko01230 map00260 map00750 map01100 map01110 map01120 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

172

Amino Acids

18.96

Weight (kDa)

6.09

Isoelectric Point (pI)

22.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	49 - 171	7e-17	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72810
fragaria_vesca	FvH4_6g34290
malus_domestica	MD02G1014500.v1.1 MD09G1187000.v1.1 MD17G1171300.v1.1
prunus_persica	Prupe.3G044400_v2.0.a1 Prupe.6G348900_v2.0.a1
pyrus_communis	pycom02g01320 pycom02g01380 pycom09g10360
rosa_chinensis	RchiOBHm_Chr2g0144621
rosa_laevigata	RLG00000020095
rosa_multiflora	Rmu_co8042306.1_g000001 Rmu_sc0009300.1_g000001
rosa_rugosa	Rorug02G0388200 Rorug05G0056000
rosa_samantha	Rh2AG440200 Rh2BG450100 Rh2BG450600 Rh2CG427300 Rh2DG460000 Rh2DG460600 Rh4BG120100 Rh5BG145500 Rh5BG145600 Rh6AG467600 Rh7CG089000
rosa_wichuraiana	Rw2G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	56, 140
AccII	CGCG	2 cut(s)	39, 57
AciI	CCGC	8 cut(s)	6, 55, 147, 234, 316, 360, 363, 372
AclWI	GGATC	1 cut(s)	388
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	330
AfeI	AGCGCT	1 cut(s)	185
AfiI	CCNNNNNNNGG	2 cut(s)	175, 326
AgsI	TTSAA	1 cut(s)	259
AjnI	CCWGG	2 cut(s)	71, 288
AluBI	AGCT	3 cut(s)	84, 217, 442
AluI	AGCT	3 cut(s)	84, 217, 442
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	1 cut(s)	148
AlwI	GGATC	1 cut(s)	388
Aor51HI	AGCGCT	1 cut(s)	185
AoxI	GGCC	4 cut(s)	3, 74, 177, 465
ApeKI	GCWGC	1 cut(s)	439
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
AspA2I	CCTAGG	2 cut(s)	202, 265
AspLEI	GCGC	5 cut(s)	39, 186, 341, 383, 439
AspS9I	GGNCC	7 cut(s)	75, 96, 112, 177, 262, 445, 465
AvaII	GGWCC	4 cut(s)	96, 112, 262, 445
AvrII	CCTAGG	2 cut(s)	202, 265
BanII	GRGCYC	1 cut(s)	219
BauI	CACGAG	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	451
BccI	CCATC	3 cut(s)	427, 461, 491
BceAI	ACGGC	1 cut(s)	40
BciT130I	CCWGG	2 cut(s)	73, 290
BcoDI	GTCTC	1 cut(s)	148
BfaI	CTAG	2 cut(s)	203, 266
BfmI	CTRYAG	1 cut(s)	79
BfoI	RGCGCY	1 cut(s)	187
BglI	GCCNNNNNGGC	1 cut(s)	249
BglII	AGATCT	1 cut(s)	426
BisI	GCNGC	4 cut(s)	6, 235, 363, 440
BlnI	CCTAGG	2 cut(s)	202, 265
BlpI	GCTNAGC	1 cut(s)	476
BlsI	GCNGC	4 cut(s)	7, 236, 364, 441
Bme1390I	CCNGG	2 cut(s)	73, 290
Bme18I	GGWCC	4 cut(s)	96, 112, 262, 445
BmgT120I	GGNCC	7 cut(s)	75, 96, 112, 177, 262, 445, 465
BmiI	GGNNCC	3 cut(s)	113, 253, 466
BmrFI	CCNGG	2 cut(s)	73, 290
BmsI	GCATC	3 cut(s)	246, 326, 489
BplI	GAGNNNNNCTC	4 cut(s)	146, 178, 383, 415
Bpu1102I	GCTNAGC	1 cut(s)	476
Bsa29I	ATCGAT	1 cut(s)	126
BsaHI	GRCGYC	1 cut(s)	330
BsaJI	CCNNGG	2 cut(s)	202, 265
BsaXI	ACNNNNNCTCC	4 cut(s)	128, 158, 236, 266
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 326
Bse118I	RCCGGY	3 cut(s)	248, 347, 415
BseBI	CCWGG	2 cut(s)	73, 290
BseCI	ATCGAT	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	202, 265
BseGI	GGATG	1 cut(s)	341
BseLI	CCNNNNNNNGG	2 cut(s)	175, 326
BseMII	CTCAG	2 cut(s)	111, 467
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	451
Bsh1236I	CGCG	2 cut(s)	39, 57
BshFI	GGCC	4 cut(s)	5, 76, 179, 467
BshVI	ATCGAT	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	3 cut(s)	249, 348, 416
BslI	CCNNNNNNNGG	2 cut(s)	175, 326
BsmAI	GTCTC	1 cut(s)	148
BsmBI	CGTCTC	1 cut(s)	148
BsnI	GGCC	4 cut(s)	5, 76, 179, 467
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	3 cut(s)	123, 393, 426
Bsp1720I	GCTNAGC	1 cut(s)	476
BspACI	CCGC	8 cut(s)	6, 55, 147, 234, 316, 360, 363, 372
BspANI	GGCC	4 cut(s)	5, 76, 179, 467
BspCNI	CTCAG	2 cut(s)	112, 468
BspDI	ATCGAT	1 cut(s)	126
BspFNI	CGCG	2 cut(s)	39, 57
BspLI	GGNNCC	3 cut(s)	113, 253, 466
BspPI	GGATC	1 cut(s)	388
BsrFI	RCCGGY	3 cut(s)	248, 347, 415
BssAI	RCCGGY	3 cut(s)	248, 347, 415
BssECI	CCNNGG	2 cut(s)	202, 265
BssMI	GATC	3 cut(s)	123, 393, 426
BssNI	GRCGYC	1 cut(s)	330
BssSI	CACGAG	1 cut(s)	87
BssT1I	CCWWGG	2 cut(s)	202, 265
Bst2BI	CACGAG	1 cut(s)	87
Bst2UI	CCWGG	2 cut(s)	73, 290
Bst4CI	ACNGT	3 cut(s)	191, 199, 277
Bst6I	CTCTTC	1 cut(s)	176
BstACI	GRCGYC	1 cut(s)	330
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	2 cut(s)	120, 476
BstF5I	GGATG	1 cut(s)	341
BstFNI	CGCG	2 cut(s)	39, 57
BstH2I	RGCGCY	1 cut(s)	187
BstHHI	GCGC	5 cut(s)	39, 186, 341, 383, 439
BstKTI	GATC	3 cut(s)	126, 396, 429
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	3 cut(s)	123, 393, 426
BstMWI	GCNNNNNNNGC	7 cut(s)	240, 249, 336, 371, 380, 448, 464
BstNI	CCWGG	2 cut(s)	73, 290
BstSCI	CCNGG	2 cut(s)	71, 288
BstSFI	CTRYAG	1 cut(s)	79
BstUI	CGCG	2 cut(s)	39, 57
BstV1I	GCAGC	1 cut(s)	451
BstX2I	RGATCY	2 cut(s)	393, 426
BstYI	RGATCY	2 cut(s)	393, 426
Bsu15I	ATCGAT	1 cut(s)	126
BsuRI	GGCC	4 cut(s)	5, 76, 179, 467
BsuTUI	ATCGAT	1 cut(s)	126
BtgZI	GCGATG	1 cut(s)	439
BtsCI	GGATG	1 cut(s)	341
BtsI	GCAGTG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	417
CfoI	GCGC	5 cut(s)	39, 186, 341, 383, 439
Cfr10I	RCCGGY	3 cut(s)	248, 347, 415
Cfr13I	GGNCC	7 cut(s)	75, 96, 112, 177, 262, 445, 465
ClaI	ATCGAT	1 cut(s)	126
CseI	GACGC	2 cut(s)	46, 319
CviAII	CATG	3 cut(s)	208, 271, 367
DdeI	CTNAG	2 cut(s)	120, 476
DpnI	GATC	3 cut(s)	125, 395, 428
DpnII	GATC	3 cut(s)	123, 393, 426
DrdI	GACNNNNNNGTC	2 cut(s)	56, 140
DseDI	GACNNNNNNGTC	2 cut(s)	56, 140
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
EciI	GGCGGA	3 cut(s)	136, 349, 361
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	2 cut(s)	202, 265
Eco24I	GRGCYC	1 cut(s)	219
Eco47I	GGWCC	4 cut(s)	96, 112, 262, 445
Eco47III	AGCGCT	1 cut(s)	185
Eco53kI	GAGCTC	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	217
EcoO109I	RGGNCCY	3 cut(s)	112, 262, 465
EcoRII	CCWGG	2 cut(s)	71, 288
EcoT14I	CCWWGG	2 cut(s)	202, 265
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	2 cut(s)	202, 265
Esp3I	CGTCTC	1 cut(s)	148
FaeI	CATG	3 cut(s)	211, 274, 370
FaiI	YATR	4 cut(s)	209, 272, 368, 506
FatI	CATG	3 cut(s)	207, 270, 366
FauI	CCCGC	1 cut(s)	62
Fnu4HI	GCNGC	4 cut(s)	6, 235, 363, 440
FokI	GGATG	1 cut(s)	348
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	4 cut(s)	6, 235, 363, 440
FspBI	CTAG	2 cut(s)	203, 266
GlaI	GCGC	5 cut(s)	38, 185, 340, 382, 438
GluI	GCNGC	4 cut(s)	6, 235, 363, 440
HaeII	RGCGCY	1 cut(s)	187
HaeIII	GGCC	4 cut(s)	5, 76, 179, 467
HapII	CCGG	3 cut(s)	249, 348, 416
HgaI	GACGC	2 cut(s)	46, 319
HhaI	GCGC	5 cut(s)	39, 186, 341, 383, 439
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	3 cut(s)	211, 274, 370
Hin6I	GCGC	5 cut(s)	37, 184, 339, 381, 437
HinP1I	GCGC	5 cut(s)	37, 184, 339, 381, 437
HinfI	GANTC	2 cut(s)	50, 508
HpaII	CCGG	3 cut(s)	249, 348, 416
Hpy188I	TCNGA	2 cut(s)	335, 513
Hpy188III	TCNNGA	2 cut(s)	13, 430
Hpy99I	CGWCG	6 cut(s)	26, 62, 137, 326, 329, 335
HpyAV	CCTTC	3 cut(s)	97, 160, 265
HpyCH4III	ACNGT	3 cut(s)	191, 199, 277
HpyF10VI	GCNNNNNNNGC	7 cut(s)	240, 249, 336, 371, 380, 448, 464
HpyF3I	CTNAG	2 cut(s)	120, 476
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	3 cut(s)	211, 274, 370
HspAI	GCGC	5 cut(s)	37, 184, 339, 381, 437
KroI	GCCGGC	1 cut(s)	415
KroNI	GCCGGC	1 cut(s)	417
Kzo9I	GATC	3 cut(s)	123, 393, 426
LmnI	GCTCC	1 cut(s)	257
Lsp1109I	GCAGC	1 cut(s)	451
LweI	GCATC	3 cut(s)	246, 326, 489
MaeI	CTAG	2 cut(s)	203, 266
MalI	GATC	3 cut(s)	125, 395, 428
MboI	GATC	3 cut(s)	123, 393, 426
MboII	GAAGA	1 cut(s)	163
MflI	RGATCY	2 cut(s)	393, 426
MhlI	GDGCHC	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	2 cut(s)	189, 313
MroNI	GCCGGC	1 cut(s)	415
MspA1I	CMGCKG	1 cut(s)	442
MspI	CCGG	3 cut(s)	249, 348, 416
MspR9I	CCNGG	2 cut(s)	73, 290
MvaI	CCWGG	2 cut(s)	73, 290
MvnI	CGCG	2 cut(s)	39, 57
MwoI	GCNNNNNNNGC	7 cut(s)	240, 249, 336, 371, 380, 448, 464
NaeI	GCCGGC	1 cut(s)	417
NdeII	GATC	3 cut(s)	123, 393, 426
NgoMIV	GCCGGC	1 cut(s)	415
NlaIII	CATG	3 cut(s)	211, 274, 370
NlaIV	GGNNCC	3 cut(s)	113, 253, 466
NmeAIII	GCCGAG	2 cut(s)	205, 415
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PdiI	GCCGGC	1 cut(s)	417
PfeI	GAWTC	1 cut(s)	508
PflFI	GACNNNGTC	1 cut(s)	140
PkrI	GCNGC	4 cut(s)	7, 236, 364, 441
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PpuMI	RGGWCCY	2 cut(s)	112, 262
Psp124BI	GAGCTC	1 cut(s)	219
Psp5II	RGGWCCY	2 cut(s)	112, 262
Psp6I	CCWGG	2 cut(s)	71, 288
PspGI	CCWGG	2 cut(s)	71, 288
PspN4I	GGNNCC	3 cut(s)	113, 253, 466
PspPI	GGNCC	7 cut(s)	75, 96, 112, 177, 262, 445, 465
PspPPI	RGGWCCY	2 cut(s)	112, 262
PsuI	RGATCY	2 cut(s)	393, 426
PsyI	GACNNNGTC	1 cut(s)	140
PvuII	CAGCTG	1 cut(s)	442
SacI	GAGCTC	1 cut(s)	219
SatI	GCNGC	4 cut(s)	6, 235, 363, 440
Sau3AI	GATC	3 cut(s)	123, 393, 426
Sau96I	GGNCC	7 cut(s)	75, 96, 112, 177, 262, 445, 465
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	2 cut(s)	73, 290
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	9 cut(s)	45, 74, 86, 171, 219, 267, 294, 359, 444
SfaNI	GCATC	3 cut(s)	246, 326, 489
SfcI	CTRYAG	1 cut(s)	79
SgrAI	CRCCGGYG	1 cut(s)	347
SinI	GGWCC	4 cut(s)	96, 112, 262, 445
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
SsiI	CCGC	8 cut(s)	6, 55, 147, 234, 316, 360, 363, 372
SspMI	CTAG	2 cut(s)	203, 266
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	71, 288
StyI	CCWWGG	2 cut(s)	202, 265
TaaI	ACNGT	3 cut(s)	191, 199, 277
TaqI	TCGA	5 cut(s)	126, 153, 431, 483, 495
TauI	GCSGC	3 cut(s)	8, 237, 365
TfiI	GAWTC	1 cut(s)	508
TscAI	CASTG	1 cut(s)	236
TseI	GCWGC	1 cut(s)	439
TspDTI	ATGAA	2 cut(s)	224, 326
TspRI	CASTG	1 cut(s)	236
Tth111I	GACNNNGTC	1 cut(s)	140
VpaK11BI	GGWCC	4 cut(s)	96, 112, 262, 445
XmaJI	CCTAGG	2 cut(s)	202, 265
XspI	CTAG	2 cut(s)	203, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.