Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005631

Physical Location & Seq

Genomic Coordinates Reverse (-)

6711911 .. 6712219

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG089000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCACGACGTGGACTTGAACGGGATCTTCGACTCTCTCCTCTTCCTCCGTGACTGGATCGTCGTCGTTGTCATCCAGAAGATTTGGTATGTGAGCTCCAGTGTCGGCAAAACCACCTGGCCCTATAACTCCGGCGTCTGGTCCAAAAACGACAGCAACGACATCGTCTCCGCCTTCGAAGGCAACTCCAACCTCTTCTGGCAGCTTCAACCTCGTTCCTACCGCCGAGATATGAGATTGCATCTGAGCTCCGATTTGAATCCGTCAGGATCTGAGATTGCATATCTGAGCTCCGATTTGCTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004795 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008144 GO:0016829 GO:0016835 GO:0016838 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044464 GO:0048037 GO:0050662 GO:0070279 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00750 ko01100 ko01110 ko01120 ko01230 map00260 map00750 map01100 map01110 map01120 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

102

Amino Acids

11.73

Weight (kDa)

5.06

Isoelectric Point (pI)

36.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72810
fragaria_vesca	FvH4_6g34290
malus_domestica	MD02G1014500.v1.1 MD09G1187000.v1.1 MD17G1171300.v1.1
prunus_persica	Prupe.3G044400_v2.0.a1 Prupe.6G348900_v2.0.a1
pyrus_communis	pycom02g01320 pycom02g01380 pycom09g10360
rosa_chinensis	RchiOBHm_Chr2g0144621
rosa_laevigata	RLG00000020095
rosa_multiflora	Rmu_co8042306.1_g000001 Rmu_sc0009300.1_g000001
rosa_rugosa	Rorug02G0388200 Rorug05G0056000
rosa_samantha	Rh2AG440200 Rh2BG450100 Rh2BG450600 Rh2CG427300 Rh2DG460000 Rh2DG460600 Rh4BG120100 Rh5BG145500 Rh5BG145600 Rh6AG467600 Rh7CG089000
rosa_wichuraiana	Rw2G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	59
AciI	CCGC	2 cut(s)	171, 223
AclWI	GGATC	3 cut(s)	32, 65, 277
AcyI	GRCGYC	1 cut(s)	135
AdeI	CACNNNGTG	1 cut(s)	10
AfiI	CCNNNNNNNGG	1 cut(s)	138
AgsI	TTSAA	3 cut(s)	19, 209, 259
AjiI	CACGTC	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	116
AluBI	AGCT	4 cut(s)	96, 205, 249, 291
AluI	AGCT	4 cut(s)	96, 205, 249, 291
Alw21I	GWGCWC	3 cut(s)	98, 251, 293
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	3 cut(s)	32, 65, 277
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	202
AspS9I	GGNCC	2 cut(s)	120, 141
AsuII	TTCGAA	1 cut(s)	177
AvaII	GGWCC	1 cut(s)	141
BanII	GRGCYC	3 cut(s)	98, 251, 293
Bbv12I	GWGCWC	3 cut(s)	98, 251, 293
BbvI	GCAGC	1 cut(s)	214
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BciT130I	CCWGG	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	172
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
Bme1390I	CCNGG	1 cut(s)	118
Bme18I	GGWCC	1 cut(s)	141
BmgBI	CACGTC	1 cut(s)	10
BmgT120I	GGNCC	2 cut(s)	120, 141
BmrFI	CCNGG	1 cut(s)	118
BmsI	GCATC	1 cut(s)	250
BpmI	CTGGAG	1 cut(s)	82
Bpu14I	TTCGAA	1 cut(s)	177
BsaBI	GATNNNNATC	1 cut(s)	258
BsaHI	GRCGYC	1 cut(s)	135
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
Bse1I	ACTGG	2 cut(s)	59, 99
Bse8I	GATNNNNATC	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	118
BseGI	GGATG	1 cut(s)	72
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseMII	CTCAG	3 cut(s)	236, 264, 278
BseNI	ACTGG	2 cut(s)	59, 99
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	214
BshFI	GGCC	1 cut(s)	121
BsiHKAI	GWGCWC	3 cut(s)	98, 251, 293
BsiSI	CCGG	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	138
BsmAI	GTCTC	1 cut(s)	172
BsmBI	CGTCTC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	121
Bsp119I	TTCGAA	1 cut(s)	177
Bsp1286I	GDGCHC	3 cut(s)	98, 251, 293
Bsp143I	GATC	3 cut(s)	24, 57, 269
BspACI	CCGC	2 cut(s)	171, 223
BspANI	GGCC	1 cut(s)	121
BspCNI	CTCAG	3 cut(s)	237, 265, 279
BspPI	GGATC	3 cut(s)	32, 65, 277
BspT104I	TTCGAA	1 cut(s)	177
BsrI	ACTGG	2 cut(s)	59, 99
BssMI	GATC	3 cut(s)	24, 57, 269
BssNI	GRCGYC	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	118
Bst6I	CTCTTC	2 cut(s)	47, 200
BstACI	GRCGYC	1 cut(s)	135
BstBI	TTCGAA	1 cut(s)	177
BstDEI	CTNAG	3 cut(s)	245, 273, 287
BstF5I	GGATG	1 cut(s)	72
BstKTI	GATC	3 cut(s)	27, 60, 272
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	3 cut(s)	24, 57, 269
BstNI	CCWGG	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	214
BstX2I	RGATCY	2 cut(s)	24, 269
BstYI	RGATCY	2 cut(s)	24, 269
BsuRI	GGCC	1 cut(s)	121
BtrI	CACGTC	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	106
CaiI	CAGNNNCTG	1 cut(s)	272
Cfr13I	GGNCC	2 cut(s)	120, 141
CseI	GACGC	1 cut(s)	124
CviJI	RGCY	5 cut(s)	96, 121, 205, 249, 291
CviKI_1	RGCY	5 cut(s)	96, 121, 205, 249, 291
DdeI	CTNAG	3 cut(s)	245, 273, 287
DpnI	GATC	3 cut(s)	26, 59, 271
DpnII	GATC	3 cut(s)	24, 57, 269
DraIII	CACNNNGTG	1 cut(s)	10
DrdI	GACNNNNNNGTC	1 cut(s)	59
DseDI	GACNNNNNNGTC	1 cut(s)	59
Eam1104I	CTCTTC	2 cut(s)	47, 200
EarI	CTCTTC	2 cut(s)	47, 200
EciI	GGCGGA	1 cut(s)	160
Ecl136II	GAGCTC	3 cut(s)	96, 249, 291
Eco24I	GRGCYC	3 cut(s)	98, 251, 293
Eco47I	GGWCC	1 cut(s)	141
Eco53kI	GAGCTC	3 cut(s)	96, 249, 291
EcoICRI	GAGCTC	3 cut(s)	96, 249, 291
EcoRII	CCWGG	1 cut(s)	116
EcoT38I	GRGCYC	3 cut(s)	98, 251, 293
Esp3I	CGTCTC	1 cut(s)	172
FaiI	YATR	4 cut(s)	90, 126, 233, 283
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	1 cut(s)	59
FriOI	GRGCYC	3 cut(s)	98, 251, 293
Fsp4HI	GCNGC	1 cut(s)	203
GluI	GCNGC	1 cut(s)	203
GsuI	CTGGAG	1 cut(s)	82
HaeIII	GGCC	1 cut(s)	121
HapII	CCGG	1 cut(s)	132
HgaI	GACGC	1 cut(s)	124
Hin1I	GRCGYC	1 cut(s)	135
HinfI	GANTC	2 cut(s)	32, 259
HpaII	CCGG	1 cut(s)	132
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	5 cut(s)	246, 253, 274, 288, 295
Hpy188III	TCNNGA	2 cut(s)	76, 267
Hpy8I	GTNNAC	1 cut(s)	13
Hpy99I	CGWCG	3 cut(s)	11, 65, 68
HpyAV	CCTTC	2 cut(s)	173, 184
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	3 cut(s)	4, 241, 281
HpyF3I	CTNAG	3 cut(s)	245, 273, 287
HpySE526I	ACGT	1 cut(s)	9
Hsp92I	GRCGYC	1 cut(s)	135
Kzo9I	GATC	3 cut(s)	24, 57, 269
LmnI	GCTCC	3 cut(s)	101, 254, 296
LpnPI	CCDG	9 cut(s)	40, 89, 103, 112, 124, 130, 145, 184, 252
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	1 cut(s)	250
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	3 cut(s)	26, 59, 271
MboI	GATC	3 cut(s)	24, 57, 269
MboII	GAAGA	4 cut(s)	19, 34, 91, 187
MflI	RGATCY	2 cut(s)	24, 269
MhlI	GDGCHC	3 cut(s)	98, 251, 293
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	4 cut(s)	50, 56, 203, 222
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	118
MvaI	CCWGG	1 cut(s)	118
NdeII	GATC	3 cut(s)	24, 57, 269
NmeAIII	GCCGAG	1 cut(s)	251
NmuCI	GTSAC	1 cut(s)	50
NspV	TTCGAA	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	2 cut(s)	27, 156
PfeI	GAWTC	1 cut(s)	259
PflFI	GACNNNGTC	1 cut(s)	164
PkrI	GCNGC	1 cut(s)	204
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
Psp124BI	GAGCTC	3 cut(s)	98, 251, 293
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspPI	GGNCC	2 cut(s)	120, 141
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	2 cut(s)	24, 269
PsyI	GACNNNGTC	1 cut(s)	164
SacI	GAGCTC	3 cut(s)	98, 251, 293
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	3 cut(s)	24, 57, 269
Sau96I	GGNCC	2 cut(s)	120, 141
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	3 cut(s)	98, 251, 293
SetI	ASST	8 cut(s)	12, 98, 119, 195, 207, 214, 251, 293
SfaNI	GCATC	1 cut(s)	250
SfuI	TTCGAA	1 cut(s)	177
SinI	GGWCC	1 cut(s)	141
SsiI	CCGC	2 cut(s)	171, 223
SstI	GAGCTC	3 cut(s)	98, 251, 293
StyD4I	CCNGG	1 cut(s)	116
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	2 cut(s)	30, 177
TfiI	GAWTC	1 cut(s)	259
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	50
TspGWI	ACGGA	2 cut(s)	38, 252
TspRI	CASTG	1 cut(s)	106
Tth111I	GACNNNGTC	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.