Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003263

Physical Location & Seq

Genomic Coordinates Forward (+)

8835832 .. 8837484

Gene Structure 1653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1109500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGTGGGGAACTGTTTTTGTAGCCATTGCTGCTGCGACAGGAAACTTGTTGCAAGGATGGGACAATGCAACCATTGCAGGGGCTGTGCTTTACATCAAAAGGGAATTTAAGTTGGAAACCCAACCGACGATCGAAGGGCTTATCGTGGCCTTGTCTTTAATCGGTGCCACTGTCATCACAACATTCTCAGGGCCAGTTTCAGATTGGCTAGGAAGACGTCCAATGCTGATAATTTCATCAGTTTTATATTTTCTCAGTGGTTTAGTAATGCTATGGGCTCCAAATGTCTATGTTCTTCTTTTGGCAAGGCTACTAGATGGGTTTGGAATTGGACTAGCCGTTACTCTTGTCCCAGTCTACATTTCTGAAACTGCCCCACCCGAAATCAGAGGGCTACTGAATACTCTCCCACAGTTTACCGGTTCGGGAGGGATGTTTTTGTCATACTGCATGGTGTTTGGAATGTCACTGAAGGATGCTCCCAGTTGGAGAATGATGCTTGGAGTTCTTTCTATTCCTTCCTTGGTTTATTTCGGATTGACTCTGTTTTACTTGCCGGAGTCTCCACGGTGGCTTGTTAGTAAAGGAAGAATGGCTGAGGCTAAGAAAGTTCTGCAGAGACTACGCGGACGGGAAGATGTTTCAGGTGAGATGGCTTTGCTGTTTGAGGGACTTGGTGTTGGAGGGGAAGCATCATTGGAAGAGTACATAATTGGACCGGCTAATGAGGGTGGTGAAGTCCAGGAAATGACTTCGGATAAAGATCAAATAAGGCTGTATGGACCGGAGGATGGGAGGGCGTCAATGATTGCGAAATCTGTCACAGGACAAGCCAATCTTGGCTTGATGTCGCGACAAGGAAGCTTGTTGAATCCAAACGTGCCTTACGTGGATCCTCTTGTAAATCTATTTGGCAGTGTTCATGAGAAGCTTCTTCCCGAAAACACAGGAAGTATGCGCAGCCTTCTTAATTTGCCGAACATGGGCAGCGTGCTAAATGTGGCGCTGCCTGGACGCCAAGACAAGACGGAGAATTGGGATTTGGAGGGGAATGGAAATGCAGCTGATTTTGAGGACAATGTTCGAAGGCCATTGCTCTCAGGTCAAAAATCAGCAAGTATGGTAAATGACATGGTGCCTAGTAAGTCCAATAGCTTCTTTGGCATGAGGCACAATAGCAGCCTCATGCTGGGGATTAGTGGTTTGAAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

405

Amino Acids

43.73

Weight (kDa)

5.46

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	7 - 224	3.5e-53	Sugar (and other) transporter
MFS_1	PF07690	13 - 202	1.9e-21	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003263)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10110
malus_domestica	MD02G1109100.v1.1 MD02G1109500.v1.1 MD15G1228300.v1.1
prunus_persica	Prupe.7G186000_v2.0.a1
pyrus_communis	pycom15g20340
rosa_chinensis	RchiOBHm_Chr1g0348791 RchiOBHm_Chr2g0096881 RchiOBHm_Chr2g0147991 RchiOBHm_Chr4g0410581 RchiOBHm_Chr7g0216381
rosa_laevigata	RLG00000016678
rosa_multiflora	Rmu_sc0000692.1_g000002 Rmu_sc0003743.1_g000031 Rmu_sc0007264.1_g000009 Rmu_sc0007806.1_g000019 Rmu_ssc0000215.1_g000006 Rmu_ssc0000433.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145190
rosa_rugosa	Rorug02G0061700
rosa_samantha	Rh1AG316900 Rh2AG109400 Rh2AG598500 Rh2BG111400 Rh2CG113500 Rh2DG112500 Rh4CG174300 Rh5BG370000 Rh5DG336900 Rh5DG401500 Rh5DG401600 Rh6DG244100 Rh7DG300200
rosa_wichuraiana	Rw1G028090 Rw2G008450 Rw7G025410 Rw7G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	220
Acc16I	TGCGCA	1 cut(s)	959
AccB1I	GGYRCC	2 cut(s)	164, 1135
AccI	GTMKAC	1 cut(s)	357
AccII	CGCG	2 cut(s)	627, 853
AciI	CCGC	1 cut(s)	627
AclWI	GGATC	2 cut(s)	887, 900
AcsI	RAATTY	1 cut(s)	104
AcuI	CTGAAG	1 cut(s)	491
AcyI	GRCGYC	3 cut(s)	217, 800, 1015
AfaI	GTAC	1 cut(s)	707
AfiI	CCNNNNNNNGG	4 cut(s)	78, 791, 983, 1189
AgeI	ACCGGT	1 cut(s)	419
AgsI	TTSAA	2 cut(s)	871, 1207
AjnI	CCWGG	2 cut(s)	741, 1009
AjuI	GAANNNNNNNTTGG	2 cut(s)	1025, 1057
AluBI	AGCT	5 cut(s)	864, 931, 1064, 1155, 1210
AluI	AGCT	5 cut(s)	864, 931, 1064, 1155, 1210
Alw26I	GTCTC	2 cut(s)	567, 613
AlwI	GGATC	2 cut(s)	887, 900
AlwNI	CAGNNNCTG	1 cut(s)	83
AoxI	GGCC	3 cut(s)	147, 191, 1088
ApeKI	GCWGC	7 cut(s)	29, 32, 960, 987, 1006, 1061, 1179
ApoI	RAATTY	1 cut(s)	104
AsiGI	ACCGGT	1 cut(s)	419
AspLEI	GCGC	2 cut(s)	960, 1006
AspS9I	GGNCC	3 cut(s)	191, 716, 782
AsuHPI	GGTGA	2 cut(s)	659, 746
AsuII	TTCGAA	1 cut(s)	1084
AvaII	GGWCC	2 cut(s)	716, 782
BamHI	GGATCC	1 cut(s)	892
BanI	GGYRCC	2 cut(s)	164, 1135
BanII	GRGCYC	1 cut(s)	280
BbsI	GAAGAC	1 cut(s)	220
BbvCI	CCTCAGC	1 cut(s)	597
BbvI	GCAGC	7 cut(s)	16, 19, 972, 993, 999, 1073, 1191
BccI	CCATC	4 cut(s)	51, 311, 646, 785
BceAI	ACGGC	1 cut(s)	323
BciT130I	CCWGG	2 cut(s)	743, 1011
BcoDI	GTCTC	2 cut(s)	567, 613
BfaI	CTAG	4 cut(s)	209, 314, 335, 1140
BfmI	CTRYAG	1 cut(s)	614
BfoI	RGCGCY	1 cut(s)	1007
BisI	GCNGC	7 cut(s)	30, 33, 961, 988, 1007, 1062, 1180
BlsI	GCNGC	7 cut(s)	31, 34, 962, 989, 1008, 1063, 1181
Bme1390I	CCNGG	2 cut(s)	743, 1011
Bme18I	GGWCC	2 cut(s)	716, 782
BmgT120I	GGNCC	3 cut(s)	191, 716, 782
BmiI	GGNNCC	4 cut(s)	166, 279, 894, 1137
BmrFI	CCNGG	2 cut(s)	743, 1011
BmrI	ACTGGG	2 cut(s)	347, 477
BmsI	GCATC	3 cut(s)	466, 486, 701
BmuI	ACTGGG	2 cut(s)	347, 477
BpiI	GAAGAC	1 cut(s)	220
Bpu10I	CCTNAGC	1 cut(s)	597
Bpu14I	TTCGAA	1 cut(s)	1084
BsaAI	YACGTR	1 cut(s)	889
BsaBI	GATNNNNATC	1 cut(s)	762
BsaHI	GRCGYC	3 cut(s)	217, 800, 1015
BsaJI	CCNNGG	2 cut(s)	522, 566
BsaWI	WCCGGW	2 cut(s)	419, 784
Bsc4I	CCNNNNNNNGG	4 cut(s)	78, 791, 983, 1189
Bse118I	RCCGGY	2 cut(s)	419, 718
Bse1I	ACTGG	3 cut(s)	194, 353, 483
Bse3DI	GCAATG	3 cut(s)	24, 72, 1091
Bse8I	GATNNNNATC	1 cut(s)	762
BseBI	CCWGG	2 cut(s)	743, 1011
BseDI	CCNNGG	2 cut(s)	522, 566
BseGI	GGATG	4 cut(s)	62, 438, 481, 796
BseJI	GATNNNNATC	1 cut(s)	762
BseLI	CCNNNNNNNGG	4 cut(s)	78, 791, 983, 1189
BseMI	GCAATG	3 cut(s)	24, 72, 1091
BseMII	CTCAG	4 cut(s)	201, 268, 588, 1113
BseNI	ACTGG	3 cut(s)	194, 353, 483
BseXI	GCAGC	7 cut(s)	16, 19, 972, 993, 999, 1073, 1191
BseYI	CCCAGC	1 cut(s)	1189
Bsh1236I	CGCG	2 cut(s)	627, 853
Bsh1285I	CGRYCG	1 cut(s)	132
BshFI	GGCC	3 cut(s)	149, 193, 1090
BshNI	GGYRCC	2 cut(s)	164, 1135
BshTI	ACCGGT	1 cut(s)	419
BsiEI	CGRYCG	1 cut(s)	132
BsiSI	CCGG	4 cut(s)	420, 557, 719, 785
BslFI	GGGAC	3 cut(s)	74, 335, 684
BslI	CCNNNNNNNGG	4 cut(s)	78, 791, 983, 1189
BsmAI	GTCTC	2 cut(s)	567, 613
BsmFI	GGGAC	3 cut(s)	74, 335, 684
BsnI	GGCC	3 cut(s)	149, 193, 1090
Bsp119I	TTCGAA	1 cut(s)	1084
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp143I	GATC	3 cut(s)	129, 763, 892
Bsp68I	TCGCGA	1 cut(s)	853
BspACI	CCGC	1 cut(s)	627
BspANI	GGCC	3 cut(s)	149, 193, 1090
BspCNI	CTCAG	4 cut(s)	200, 267, 589, 1112
BspFNI	CGCG	2 cut(s)	627, 853
BspHI	TCATGA	1 cut(s)	922
BspLI	GGNNCC	4 cut(s)	166, 279, 894, 1137
BspMAI	CTGCAG	1 cut(s)	618
BspPI	GGATC	2 cut(s)	887, 900
BspT104I	TTCGAA	1 cut(s)	1084
BspT107I	GGYRCC	2 cut(s)	164, 1135
BsrDI	GCAATG	3 cut(s)	24, 72, 1091
BsrFI	RCCGGY	2 cut(s)	419, 718
BsrI	ACTGG	3 cut(s)	194, 353, 483
BssAI	RCCGGY	2 cut(s)	419, 718
BssECI	CCNNGG	2 cut(s)	522, 566
BssMI	GATC	3 cut(s)	129, 763, 892
BssNI	GRCGYC	3 cut(s)	217, 800, 1015
BssT1I	CCWWGG	1 cut(s)	522
Bst2UI	CCWGG	2 cut(s)	743, 1011
Bst4CI	ACNGT	4 cut(s)	13, 172, 414, 570
Bst6I	CTCTTC	1 cut(s)	696
BstACI	GRCGYC	3 cut(s)	217, 800, 1015
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstBAI	YACGTR	1 cut(s)	889
BstBI	TTCGAA	1 cut(s)	1084
BstC8I	GCNNGC	1 cut(s)	992
BstDEI	CTNAG	5 cut(s)	187, 254, 597, 603, 1099
BstDSI	CCRYGG	1 cut(s)	566
BstF5I	GGATG	4 cut(s)	62, 438, 481, 796
BstFNI	CGCG	2 cut(s)	627, 853
BstH2I	RGCGCY	1 cut(s)	1007
BstHHI	GCGC	2 cut(s)	960, 1006
BstKTI	GATC	3 cut(s)	132, 766, 895
BstMAI	GTCTC	2 cut(s)	567, 613
BstMBI	GATC	3 cut(s)	129, 763, 892
BstMCI	CGRYCG	1 cut(s)	132
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 74, 1161
BstNI	CCWGG	2 cut(s)	743, 1011
BstSCI	CCNGG	2 cut(s)	741, 1009
BstSFI	CTRYAG	1 cut(s)	614
BstUI	CGCG	2 cut(s)	627, 853
BstV1I	GCAGC	7 cut(s)	16, 19, 972, 993, 999, 1073, 1191
BstV2I	GAAGAC	1 cut(s)	220
BstX2I	RGATCY	1 cut(s)	892
BstYI	RGATCY	1 cut(s)	892
BsuRI	GGCC	3 cut(s)	149, 193, 1090
BtgI	CCRYGG	1 cut(s)	566
BtsCI	GGATG	4 cut(s)	62, 438, 481, 796
BtsI	GCAGTG	1 cut(s)	922
BtsIMutI	CAGTG	4 cut(s)	168, 262, 467, 922
BtuMI	TCGCGA	1 cut(s)	853
Cac8I	GCNNGC	1 cut(s)	992
CaiI	CAGNNNCTG	1 cut(s)	83
CciI	TCATGA	1 cut(s)	922
CfoI	GCGC	2 cut(s)	960, 1006
Cfr10I	RCCGGY	2 cut(s)	419, 718
Cfr13I	GGNCC	3 cut(s)	191, 716, 782
CseI	GACGC	2 cut(s)	789, 1023
Csp6I	GTAC	1 cut(s)	706
CspAI	ACCGGT	1 cut(s)	419
CviAII	CATG	6 cut(s)	451, 923, 982, 1132, 1165, 1186
CviQI	GTAC	1 cut(s)	706
DdeI	CTNAG	5 cut(s)	187, 254, 597, 603, 1099
DpnI	GATC	3 cut(s)	131, 765, 894
DpnII	GATC	3 cut(s)	129, 763, 892
Eam1104I	CTCTTC	1 cut(s)	696
EarI	CTCTTC	1 cut(s)	696
Eco130I	CCWWGG	1 cut(s)	522
Eco24I	GRGCYC	1 cut(s)	280
Eco47I	GGWCC	2 cut(s)	716, 782
Eco57I	CTGAAG	1 cut(s)	491
EcoRII	CCWGG	2 cut(s)	741, 1009
EcoT14I	CCWWGG	1 cut(s)	522
EcoT38I	GRGCYC	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	6 cut(s)	454, 926, 985, 1135, 1168, 1189
FalI	AAGNNNNNCTT	2 cut(s)	822, 854
FaqI	GGGAC	3 cut(s)	74, 335, 684
FatI	CATG	6 cut(s)	450, 922, 981, 1131, 1164, 1185
FblI	GTMKAC	1 cut(s)	357
Fnu4HI	GCNGC	7 cut(s)	30, 33, 961, 988, 1007, 1062, 1180
FokI	GGATG	4 cut(s)	69, 445, 488, 803
FriOI	GRGCYC	1 cut(s)	280
Fsp4HI	GCNGC	7 cut(s)	30, 33, 961, 988, 1007, 1062, 1180
FspBI	CTAG	4 cut(s)	209, 314, 335, 1140
FspI	TGCGCA	1 cut(s)	959
GlaI	GCGC	2 cut(s)	959, 1005
GluI	GCNGC	7 cut(s)	30, 33, 961, 988, 1007, 1062, 1180
GsaI	CCCAGC	1 cut(s)	1193
HaeII	RGCGCY	1 cut(s)	1007
HaeIII	GGCC	3 cut(s)	149, 193, 1090
HapII	CCGG	4 cut(s)	420, 557, 719, 785
HgaI	GACGC	2 cut(s)	789, 1023
HhaI	GCGC	2 cut(s)	960, 1006
Hin1I	GRCGYC	3 cut(s)	217, 800, 1015
Hin1II	CATG	6 cut(s)	454, 926, 985, 1135, 1168, 1189
Hin6I	GCGC	2 cut(s)	958, 1004
HinP1I	GCGC	2 cut(s)	958, 1004
HindIII	AAGCTT	2 cut(s)	862, 929
HinfI	GANTC	3 cut(s)	541, 560, 871
HpaII	CCGG	4 cut(s)	420, 557, 719, 785
HphI	GGTGA	2 cut(s)	659, 746
Hpy166II	GTNNAC	2 cut(s)	358, 417
Hpy188I	TCNGA	5 cut(s)	202, 367, 389, 536, 757
Hpy188III	TCNNGA	4 cut(s)	426, 852, 923, 938
Hpy8I	GTNNAC	2 cut(s)	358, 417
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	5 cut(s)	128, 466, 528, 974, 1080
HpyCH4III	ACNGT	4 cut(s)	13, 172, 414, 570
HpyCH4IV	ACGT	3 cut(s)	217, 879, 888
HpyCH4V	TGCA	6 cut(s)	52, 68, 77, 450, 616, 1061
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 74, 1161
HpyF3I	CTNAG	5 cut(s)	187, 254, 597, 603, 1099
HpySE526I	ACGT	3 cut(s)	217, 879, 888
Hsp92I	GRCGYC	3 cut(s)	217, 800, 1015
Hsp92II	CATG	6 cut(s)	454, 926, 985, 1135, 1168, 1189
HspAI	GCGC	2 cut(s)	958, 1004
Kzo9I	GATC	3 cut(s)	129, 763, 892
LmnI	GCTCC	2 cut(s)	283, 484
Lsp1109I	GCAGC	7 cut(s)	16, 19, 972, 993, 999, 1073, 1191
LweI	GCATC	3 cut(s)	466, 486, 701
MaeI	CTAG	4 cut(s)	209, 314, 335, 1140
MaeII	ACGT	3 cut(s)	217, 879, 888
MaeIII	GTNAC	3 cut(s)	340, 465, 820
MalI	GATC	3 cut(s)	131, 765, 894
MboI	GATC	3 cut(s)	129, 763, 892
MboII	GAAGA	6 cut(s)	225, 287, 600, 647, 713, 926
MflI	RGATCY	1 cut(s)	892
MhlI	GDGCHC	1 cut(s)	280
MluCI	AATT	6 cut(s)	104, 231, 327, 711, 970, 1033
MlyI	GAGTC	2 cut(s)	535, 569
MmeI	TCCRAC	3 cut(s)	93, 467, 661
MseI	TTAA	3 cut(s)	108, 158, 969
MspA1I	CMGCKG	1 cut(s)	1064
MspI	CCGG	4 cut(s)	420, 557, 719, 785
MspR9I	CCNGG	2 cut(s)	743, 1011
MvaI	CCWGG	2 cut(s)	743, 1011
MvnI	CGCG	2 cut(s)	627, 853
MwoI	GCNNNNNNNGC	3 cut(s)	29, 74, 1161
NdeII	GATC	3 cut(s)	129, 763, 892
NlaIII	CATG	6 cut(s)	454, 926, 985, 1135, 1168, 1189
NlaIV	GGNNCC	4 cut(s)	166, 279, 894, 1137
NmuCI	GTSAC	2 cut(s)	465, 820
NruI	TCGCGA	1 cut(s)	853
NsbI	TGCGCA	1 cut(s)	959
NspV	TTCGAA	1 cut(s)	1084
PagI	TCATGA	1 cut(s)	922
PcsI	WCGNNNNNNNCGW	1 cut(s)	885
PfeI	GAWTC	1 cut(s)	871
PfoI	TCCNGGA	1 cut(s)	741
PinAI	ACCGGT	1 cut(s)	419
PkrI	GCNGC	7 cut(s)	31, 34, 962, 989, 1008, 1063, 1181
Ple19I	CGATCG	1 cut(s)	132
PleI	GAGTC	2 cut(s)	535, 568
PpsI	GAGTC	2 cut(s)	535, 568
Ppu21I	YACGTR	1 cut(s)	889
Psp6I	CCWGG	2 cut(s)	741, 1009
PspFI	CCCAGC	1 cut(s)	1189
PspGI	CCWGG	2 cut(s)	741, 1009
PspN4I	GGNNCC	4 cut(s)	166, 279, 894, 1137
PspPI	GGNCC	3 cut(s)	191, 716, 782
PstI	CTGCAG	1 cut(s)	618
PstNI	CAGNNNCTG	1 cut(s)	83
PsuI	RGATCY	1 cut(s)	892
PvuI	CGATCG	1 cut(s)	132
PvuII	CAGCTG	1 cut(s)	1064
RruI	TCGCGA	1 cut(s)	853
RsaI	GTAC	1 cut(s)	707
RsaNI	GTAC	1 cut(s)	706
SaqAI	TTAA	3 cut(s)	108, 158, 969
SatI	GCNGC	7 cut(s)	30, 33, 961, 988, 1007, 1062, 1180
Sau3AI	GATC	3 cut(s)	129, 763, 892
Sau96I	GGNCC	3 cut(s)	191, 716, 782
SchI	GAGTC	2 cut(s)	535, 569
ScrFI	CCNGG	2 cut(s)	743, 1011
SduI	GDGCHC	1 cut(s)	280
SfaNI	GCATC	3 cut(s)	466, 486, 701
SfcI	CTRYAG	1 cut(s)	614
SfuI	TTCGAA	1 cut(s)	1084
SinI	GGWCC	2 cut(s)	716, 782
Sse9I	AATT	6 cut(s)	104, 231, 327, 711, 970, 1033
SsiI	CCGC	1 cut(s)	627
SspMI	CTAG	4 cut(s)	209, 314, 335, 1140
StyD4I	CCNGG	2 cut(s)	741, 1009
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	4 cut(s)	13, 172, 414, 570
TaiI	ACGT	3 cut(s)	220, 882, 891
TaqI	TCGA	2 cut(s)	132, 1084
TasI	AATT	6 cut(s)	104, 231, 327, 711, 970, 1033
TatI	WGTACW	1 cut(s)	705
TfiI	GAWTC	1 cut(s)	871
Tru1I	TTAA	3 cut(s)	108, 158, 969
Tru9I	TTAA	3 cut(s)	108, 158, 969
TscAI	CASTG	4 cut(s)	175, 262, 474, 922
TseFI	GTSAC	2 cut(s)	465, 820
TseI	GCWGC	7 cut(s)	29, 32, 960, 987, 1006, 1061, 1179
Tsp45I	GTSAC	2 cut(s)	465, 820
TspDTI	ATGAA	2 cut(s)	225, 911
TspGWI	ACGGA	1 cut(s)	1043
TspRI	CASTG	4 cut(s)	175, 262, 474, 922
VpaK11BI	GGWCC	2 cut(s)	716, 782
XapI	RAATTY	1 cut(s)	104
XcmI	CCANNNNNNNNNTGG	1 cut(s)	201
XmiI	GTMKAC	1 cut(s)	357
XspI	CTAG	4 cut(s)	209, 314, 335, 1140
ZraI	GACGTC	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.