Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003263

Physical Location & Seq

Genomic Coordinates Forward (+)

54975975 .. 54979500

Gene Structure 3526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG316900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAGGACTGCGGCCACATATTCTTTGTGGGTGCTCAATGCTGACTCGCATTTAGGAAGCTCTGAACTGTGCCTAGCCTCACCTGGAAGAGGTTTGATTGAGATTGGGGGATGGGACAATGCTACAATTGCTGGGGCTATTGTTTACATCACGGACGATTTTGATTTAGGTAGCTCGGTAGAAGGTCTTGTTGTGGCCATGTCACTCATCGGGGCAACATTTATTACAACATGCTCAGGAGCCATATCAGATTGGCTTGGTCGGAGGCCAATGCTAATAGCATTATCAGTTCTTTATTTTGTGAGTGGCTTGGTGATGTTGTGGTCACCCAATGTGTATGTACTATGTCTTGCAAGGCTATTAGATGGATTTGGAATTGGTTTAGCGGTTACTCTTGTCCCAGTCTACATATCCGAGACCGCCCCATCAGATATTAGGGGATCGTTGAATACTCTTCCACAGTTCCTTGGTTCAGGAGGCATGTTTTTGTCATATTGTATGGTTTTCGGGATGTCACTGTTGGCCTCGCCAAGCTGGAGACTGATGCTTGGGATTCTTTCCATTCTCTCTCTTATATATTTTGTATTAATCGTGTTTTACTTACCTGAATCTCCTCGATGGCTTGTGAGTAAGGGCAGGATGCTCAAGGCAAAGAAGGTTCTCCAGAGCTTGCGTGGCACTGAAGATGTTTCTGGTTTGTTGCTTATTCTCTGGTTTGCTCATATTTTGTATATGTATAGTGATCTATGTTTTATAATGCATAGTGCCATAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

258

Amino Acids

28.05

Weight (kDa)

5.87

Isoelectric Point (pI)

55.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	37 - 231	4.9e-45	Sugar (and other) transporter
MFS_1	PF07690	37 - 241	3.5e-21	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003263)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10110
malus_domestica	MD02G1109100.v1.1 MD02G1109500.v1.1 MD15G1228300.v1.1
prunus_persica	Prupe.7G186000_v2.0.a1
pyrus_communis	pycom15g20340
rosa_chinensis	RchiOBHm_Chr1g0348791 RchiOBHm_Chr2g0096881 RchiOBHm_Chr2g0147991 RchiOBHm_Chr4g0410581 RchiOBHm_Chr7g0216381
rosa_laevigata	RLG00000016678
rosa_multiflora	Rmu_sc0000692.1_g000002 Rmu_sc0003743.1_g000031 Rmu_sc0007264.1_g000009 Rmu_sc0007806.1_g000019 Rmu_ssc0000215.1_g000006 Rmu_ssc0000433.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145190
rosa_rugosa	Rorug02G0061700
rosa_samantha	Rh1AG316900 Rh2AG109400 Rh2AG598500 Rh2BG111400 Rh2CG113500 Rh2DG112500 Rh4CG174300 Rh5BG370000 Rh5DG336900 Rh5DG401500 Rh5DG401600 Rh6DG244100 Rh7DG300200
rosa_wichuraiana	Rw1G028090 Rw2G008450 Rw7G025410 Rw7G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	755
AccI	GTMKAC	1 cut(s)	405
AciI	CCGC	3 cut(s)	11, 386, 420
AclWI	GGATC	1 cut(s)	448
AcoI	YGGCCR	2 cut(s)	12, 195
AcuI	CTGAAG	1 cut(s)	702
AfaI	GTAC	1 cut(s)	342
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	448
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	4 cut(s)	60, 174, 534, 669
AluI	AGCT	4 cut(s)	60, 174, 534, 669
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	2 cut(s)	410, 532
AlwI	GGATC	1 cut(s)	448
AoxI	GGCC	4 cut(s)	12, 195, 266, 522
AseI	ATTAAT	1 cut(s)	587
AsuHPI	GGTGA	3 cut(s)	72, 318, 325
BalI	TGGCCA	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	36
BccI	CCATC	4 cut(s)	105, 359, 433, 612
BciT130I	CCWGG	1 cut(s)	84
BcoDI	GTCTC	2 cut(s)	410, 532
BfaI	CTAG	1 cut(s)	74
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	84
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	84
BmrI	ACTGGG	1 cut(s)	395
BmsI	GCATC	2 cut(s)	534, 630
BmuI	ACTGGG	1 cut(s)	395
BpmI	CTGGAG	2 cut(s)	556, 647
Bpu10I	CCTNAGC	1 cut(s)	235
BpuEI	CTTGAG	1 cut(s)	629
BsaI	GGTCTC	1 cut(s)	410
BsaJI	CCNNGG	1 cut(s)	466
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	401
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	466
BseGI	GGATG	3 cut(s)	116, 516, 645
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	401
BseRI	GAGGAG	1 cut(s)	603
BseYI	CCCAGC	1 cut(s)	131
BshFI	GGCC	4 cut(s)	14, 197, 268, 524
BsiHKAI	GWGCWC	1 cut(s)	36
BslFI	GGGAC	2 cut(s)	128, 383
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	2 cut(s)	410, 532
BsmFI	GGGAC	2 cut(s)	128, 383
BsnI	GGCC	4 cut(s)	14, 197, 268, 524
Bso31I	GGTCTC	1 cut(s)	410
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	2 cut(s)	440, 742
BspACI	CCGC	3 cut(s)	11, 386, 420
BspANI	GGCC	4 cut(s)	14, 197, 268, 524
BspCNI	CTCAG	1 cut(s)	248
BspLI	GGNNCC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	448
BspTNI	GGTCTC	1 cut(s)	410
BsrI	ACTGG	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	466
BssMI	GATC	2 cut(s)	440, 742
BssT1I	CCWWGG	1 cut(s)	466
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	3 cut(s)	69, 462, 519
Bst6I	CTCTTC	2 cut(s)	82, 459
BstC8I	GCNNGC	1 cut(s)	671
BstDEI	CTNAG	1 cut(s)	235
BstEII	GGTNACC	1 cut(s)	324
BstENI	CCTNNNNNAGG	1 cut(s)	87
BstF5I	GGATG	3 cut(s)	116, 516, 645
BstKTI	GATC	2 cut(s)	443, 745
BstMAI	GTCTC	2 cut(s)	410, 532
BstMBI	GATC	2 cut(s)	440, 742
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 675
BstNI	CCWGG	1 cut(s)	84
BstNSI	RCATGY	2 cut(s)	234, 484
BstPI	GGTNACC	1 cut(s)	324
BstSCI	CCNGG	1 cut(s)	82
BsuRI	GGCC	4 cut(s)	14, 197, 268, 524
BtsCI	GGATG	3 cut(s)	116, 516, 645
BtsIMutI	CAGTG	2 cut(s)	515, 678
Cac8I	GCNNGC	1 cut(s)	671
Csp6I	GTAC	1 cut(s)	341
CviAII	CATG	3 cut(s)	199, 231, 481
CviQI	GTAC	1 cut(s)	341
DdeI	CTNAG	1 cut(s)	235
DpnI	GATC	2 cut(s)	442, 744
DpnII	GATC	2 cut(s)	440, 742
EaeI	YGGCCR	2 cut(s)	12, 195
Eam1104I	CTCTTC	2 cut(s)	82, 459
EarI	CTCTTC	2 cut(s)	82, 459
Eco130I	CCWWGG	1 cut(s)	466
Eco31I	GGTCTC	1 cut(s)	410
Eco57I	CTGAAG	1 cut(s)	702
Eco91I	GGTNACC	1 cut(s)	324
EcoNI	CCTNNNNNAGG	1 cut(s)	87
EcoO65I	GGTNACC	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	466
EcoT22I	ATGCAT	1 cut(s)	762
ErhI	CCWWGG	1 cut(s)	466
FaeI	CATG	3 cut(s)	202, 234, 484
FaqI	GGGAC	2 cut(s)	128, 383
FatI	CATG	3 cut(s)	198, 230, 480
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	3 cut(s)	123, 523, 652
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	1 cut(s)	12
GsaI	CCCAGC	1 cut(s)	135
GsuI	CTGGAG	2 cut(s)	556, 647
HaeIII	GGCC	4 cut(s)	14, 197, 268, 524
Hin1II	CATG	3 cut(s)	202, 234, 484
HinfI	GANTC	3 cut(s)	44, 553, 608
HphI	GGTGA	3 cut(s)	72, 318, 325
Hpy166II	GTNNAC	2 cut(s)	145, 406
Hpy188I	TCNGA	5 cut(s)	64, 250, 264, 415, 430
Hpy188III	TCNNGA	4 cut(s)	237, 474, 508, 664
Hpy8I	GTNNAC	2 cut(s)	145, 406
HpyAV	CCTTC	2 cut(s)	176, 649
HpyCH4III	ACNGT	3 cut(s)	69, 462, 519
HpyCH4V	TGCA	2 cut(s)	353, 760
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 675
HpyF3I	CTNAG	1 cut(s)	235
Hsp92II	CATG	3 cut(s)	202, 234, 484
Kzo9I	GATC	2 cut(s)	440, 742
LmnI	GCTCC	1 cut(s)	239
LweI	GCATC	2 cut(s)	534, 630
MaeI	CTAG	1 cut(s)	74
MaeIII	GTNAC	4 cut(s)	201, 324, 388, 513
MalI	GATC	2 cut(s)	442, 744
MboI	GATC	2 cut(s)	440, 742
MboII	GAAGA	3 cut(s)	99, 446, 695
MfeI	CAATTG	1 cut(s)	126
MhlI	GDGCHC	1 cut(s)	36
MlsI	TGGCCA	1 cut(s)	197
MluCI	AATT	3 cut(s)	126, 375, 771
MluNI	TGGCCA	1 cut(s)	197
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	242
MnlI	CCTC	6 cut(s)	83, 88, 258, 470, 535, 624
Mox20I	TGGCCA	1 cut(s)	197
Mph1103I	ATGCAT	1 cut(s)	762
MscI	TGGCCA	1 cut(s)	197
MseI	TTAA	1 cut(s)	587
Msp20I	TGGCCA	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	84
MunI	CAATTG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	128, 675
NdeII	GATC	2 cut(s)	440, 742
NlaIII	CATG	3 cut(s)	202, 234, 484
NlaIV	GGNNCC	1 cut(s)	241
NmuCI	GTSAC	3 cut(s)	201, 324, 513
NsiI	ATGCAT	1 cut(s)	762
NspI	RCATGY	2 cut(s)	234, 484
PfeI	GAWTC	2 cut(s)	553, 608
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
PshBI	ATTAAT	1 cut(s)	587
PsiI	TTATAA	1 cut(s)	755
Psp6I	CCWGG	1 cut(s)	82
PspEI	GGTNACC	1 cut(s)	324
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	241
RsaI	GTAC	1 cut(s)	342
RsaNI	GTAC	1 cut(s)	341
SaqAI	TTAA	1 cut(s)	587
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	2 cut(s)	440, 742
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	1 cut(s)	36
SfaNI	GCATC	2 cut(s)	534, 630
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
Sse9I	AATT	3 cut(s)	126, 375, 771
SsiI	CCGC	3 cut(s)	11, 386, 420
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	466
TaaI	ACNGT	3 cut(s)	69, 462, 519
TaqI	TCGA	1 cut(s)	616
TasI	AATT	3 cut(s)	126, 375, 771
TatI	WGTACW	1 cut(s)	340
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	2 cut(s)	553, 608
Tru1I	TTAA	1 cut(s)	587
Tru9I	TTAA	1 cut(s)	587
TscAI	CASTG	2 cut(s)	522, 685
TseFI	GTSAC	3 cut(s)	201, 324, 513
Tsp45I	GTSAC	3 cut(s)	201, 324, 513
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	2 cut(s)	522, 685
VspI	ATTAAT	1 cut(s)	587
XagI	CCTNNNNNAGG	1 cut(s)	87
XceI	RCATGY	2 cut(s)	234, 484
XcmI	CCANNNNNNNNNTGG	1 cut(s)	671
XmiI	GTMKAC	1 cut(s)	405
XspI	CTAG	1 cut(s)	74
Zsp2I	ATGCAT	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.