Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003263

Physical Location & Seq

Genomic Coordinates Forward (+)

34359688 .. 34362025

Gene Structure 2338 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38148

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGAAGGAAGCTGTGCTTGTGGCTTTTGCTGCTACAATTGGTAACTTTCTGCAAGGATGGGACAATGCTACAATTGCTGGGGCTATTGTTTACATCACGGACGATTTTGATTTAAGTAGCTCGGTAGAAGGTCTTGTTGTGGCCATGTCACTCATTGGGGCAACAGTTATTACAACATGCTCAGGAGGCATATCAGATTGGCTTGGTCGGAGGCCAATGCTAATAGCATCATCAGTTCTTTATTTTGTGAGTGGCTTGGTGATGTTGTGGTCACCCAATGTGTATGTACTATGTCTTGCAAGGCTATTAGATGGATTTGGAATTGGTTTAGCGGTTACTCTTGTCCCAGTCTACATATCCGAGACCGCCCCATCAGATATAAGGGGATCGTTGAATACTCTTCCACAGTTCCTTGGTTCAGGAGGCATGTTTTTGTCATATTGTATGGTTTTTGGGATGTCGCTGTTAGCCTTGCCAAGCTGGAGACTGATGCTTGGGATTCTTTCTATTCTCTCTCTTATATATTTTGTATTAACCGTGTTTTACTTACCTGAATCTCCTCGATGGCTTGTGATTAAGGGCAGGATGCTCGAGGCAAAGAAGGTTCTCCAGAGCTTGCGTGGCACTGAAGATGTTTCTGGTGAGATGGCTTTGCTTGTCGAAGGTCTTGGAGTTGGAGGTGAAACATCTTTAGAAGAGTACATCATAGGCCCAGCTGATGATCTTGATGGTCAGGAAACAGCTGACAAAGACAAAATCAGGTTATATGGACCCGAAGAGGGCCTTTCCTGGGTTGCCAGACCTGTAACTGGGCAGGGTTCTTTTGTCAGTCTTGTCTCTCGCCAAGGAAGCTTGGCAACCCAGAATGTGCCTCTAATGGATCCTCTTGTCACTCTCTTTGGTAGTGTCCATGAAAACTTCCCAGAGGCAGGGAGTACGCGGGGAAGCATGCTCTTTTCTAACTTTGGCAGCATGTTCAGCACAGCAGATCATCCACGGGGTAAAACTGAACAATGGGATGAAGAGAGCTTGCATAGGGAAGGTGAGGACTATGCATCTGGAGGAGACTCAGATGACAATCTGCATAGTCCTTTGATTTCACGCCAGACGACAAGTATGGAAAAGGATATGGTGCCACCTCCTCCTTCCCATAGTAGTATTCTAGGCATGAGGCGCAACAGCAGTCTCATGCAAGGAACTGGGGAGACAGTTGGTAGCACAGGCATTGGTGGTGGGTGGCAGTTGGCATGGAAGTGGTCTGAGAGACAAGGCGAGGATGGAAAGAAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

430

Amino Acids

46.33

Weight (kDa)

4.68

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	7 - 222	9.5e-49	Sugar (and other) transporter
MFS_1	PF07690	12 - 192	2.9e-23	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003263)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10110
malus_domestica	MD02G1109100.v1.1 MD02G1109500.v1.1 MD15G1228300.v1.1
prunus_persica	Prupe.7G186000_v2.0.a1
pyrus_communis	pycom15g20340
rosa_chinensis	RchiOBHm_Chr1g0348791 RchiOBHm_Chr2g0096881 RchiOBHm_Chr2g0147991 RchiOBHm_Chr4g0410581 RchiOBHm_Chr7g0216381
rosa_laevigata	RLG00000016678
rosa_multiflora	Rmu_sc0000692.1_g000002 Rmu_sc0003743.1_g000031 Rmu_sc0007264.1_g000009 Rmu_sc0007806.1_g000019 Rmu_ssc0000215.1_g000006 Rmu_ssc0000433.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145190
rosa_rugosa	Rorug02G0061700
rosa_samantha	Rh1AG316900 Rh2AG109400 Rh2AG598500 Rh2BG111400 Rh2CG113500 Rh2DG112500 Rh4CG174300 Rh5BG370000 Rh5DG336900 Rh5DG401500 Rh5DG401600 Rh6DG244100 Rh7DG300200
rosa_wichuraiana	Rw1G028090 Rw2G008450 Rw7G025410 Rw7G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1132
AccI	GTMKAC	1 cut(s)	351
AccII	CGCG	1 cut(s)	940
AciI	CCGC	3 cut(s)	332, 366, 940
AclWI	GGATC	3 cut(s)	394, 875, 888
AcoI	YGGCCR	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	648
AfaI	GTAC	3 cut(s)	288, 701, 937
AfiI	CCNNNNNNNGG	4 cut(s)	779, 790, 809, 929
AgsI	TTSAA	1 cut(s)	394
AjnI	CCWGG	1 cut(s)	788
AluBI	AGCT	8 cut(s)	11, 120, 480, 615, 716, 743, 852, 1029
AluI	AGCT	8 cut(s)	11, 120, 480, 615, 716, 743, 852, 1029
Alw26I	GTCTC	7 cut(s)	356, 478, 841, 1059, 1190, 1199, 1258
AlwI	GGATC	3 cut(s)	394, 875, 888
Ama87I	CYCGRG	1 cut(s)	590
AoxI	GGCC	4 cut(s)	141, 212, 709, 781
ApeKI	GCWGC	2 cut(s)	29, 969
AspLEI	GCGC	1 cut(s)	1176
AspS9I	GGNCC	3 cut(s)	710, 770, 781
AsuHPI	GGTGA	5 cut(s)	264, 271, 653, 692, 1055
AvaI	CYCGRG	1 cut(s)	590
AvaII	GGWCC	1 cut(s)	770
BalI	TGGCCA	1 cut(s)	143
BamHI	GGATCC	1 cut(s)	880
BanI	GGYRCC	1 cut(s)	1132
BbvI	GCAGC	2 cut(s)	16, 981
BccI	CCATC	7 cut(s)	51, 305, 379, 558, 640, 722, 1271
BcgI	CGANNNNNNTGC	2 cut(s)	571, 605
BciT130I	CCWGG	1 cut(s)	790
BcoDI	GTCTC	7 cut(s)	356, 478, 841, 1059, 1190, 1199, 1258
BfaI	CTAG	1 cut(s)	1163
BisI	GCNGC	2 cut(s)	30, 970
BlsI	GCNGC	2 cut(s)	31, 971
Bme1390I	CCNGG	1 cut(s)	790
Bme18I	GGWCC	1 cut(s)	770
BmeT110I	CYCGRG	1 cut(s)	590
BmgT120I	GGNCC	3 cut(s)	710, 770, 781
BmiI	GGNNCC	3 cut(s)	772, 882, 1134
BmrFI	CCNGG	1 cut(s)	790
BmrI	ACTGGG	3 cut(s)	341, 819, 1209
BmsI	GCATC	4 cut(s)	236, 480, 576, 1064
BmuI	ACTGGG	3 cut(s)	341, 819, 1209
BpmI	CTGGAG	3 cut(s)	502, 593, 1080
Bpu10I	CCTNAGC	1 cut(s)	181
BsaBI	GATNNNNATC	1 cut(s)	1077
BsaI	GGTCTC	1 cut(s)	356
BsaJI	CCNNGG	4 cut(s)	412, 789, 844, 995
Bsc4I	CCNNNNNNNGG	4 cut(s)	779, 790, 809, 929
Bse1I	ACTGG	3 cut(s)	347, 814, 1204
Bse8I	GATNNNNATC	1 cut(s)	1077
BseBI	CCWGG	1 cut(s)	790
BseDI	CCNNGG	4 cut(s)	412, 789, 844, 995
BseGI	GGATG	6 cut(s)	62, 462, 591, 991, 1024, 1282
BseJI	GATNNNNATC	1 cut(s)	1077
BseLI	CCNNNNNNNGG	4 cut(s)	779, 790, 809, 929
BseMII	CTCAG	3 cut(s)	195, 1083, 1251
BseNI	ACTGG	3 cut(s)	347, 814, 1204
BseRI	GAGGAG	3 cut(s)	549, 1077, 1131
BseXI	GCAGC	2 cut(s)	16, 981
BseYI	CCCAGC	2 cut(s)	77, 712
Bsh1236I	CGCG	1 cut(s)	940
BshFI	GGCC	4 cut(s)	143, 214, 711, 783
BshNI	GGYRCC	1 cut(s)	1132
BsiHKCI	CYCGRG	1 cut(s)	590
BslFI	GGGAC	2 cut(s)	74, 329
BslI	CCNNNNNNNGG	4 cut(s)	779, 790, 809, 929
BsmAI	GTCTC	7 cut(s)	356, 478, 841, 1059, 1190, 1199, 1258
BsmFI	GGGAC	2 cut(s)	74, 329
BsnI	GGCC	4 cut(s)	143, 214, 711, 783
Bso31I	GGTCTC	1 cut(s)	356
BsoBI	CYCGRG	1 cut(s)	590
Bsp143I	GATC	4 cut(s)	386, 721, 880, 988
BspACI	CCGC	3 cut(s)	332, 366, 940
BspANI	GGCC	4 cut(s)	143, 214, 711, 783
BspCNI	CTCAG	3 cut(s)	194, 1082, 1252
BspFNI	CGCG	1 cut(s)	940
BspLI	GGNNCC	3 cut(s)	772, 882, 1134
BspPI	GGATC	3 cut(s)	394, 875, 888
BspT107I	GGYRCC	1 cut(s)	1132
BspTNI	GGTCTC	1 cut(s)	356
BsrI	ACTGG	3 cut(s)	347, 814, 1204
BssECI	CCNNGG	4 cut(s)	412, 789, 844, 995
BssMI	GATC	4 cut(s)	386, 721, 880, 988
BssT1I	CCWWGG	2 cut(s)	412, 844
Bst2UI	CCWGG	1 cut(s)	790
Bst4CI	ACNGT	4 cut(s)	166, 408, 538, 1210
Bst6I	CTCTTC	4 cut(s)	405, 690, 771, 1017
BstC8I	GCNNGC	3 cut(s)	617, 950, 1031
BstDEI	CTNAG	3 cut(s)	181, 1069, 1260
BstDSI	CCRYGG	1 cut(s)	995
BstEII	GGTNACC	1 cut(s)	270
BstF5I	GGATG	6 cut(s)	62, 462, 591, 991, 1024, 1282
BstFNI	CGCG	1 cut(s)	940
BstHHI	GCGC	1 cut(s)	1176
BstKTI	GATC	4 cut(s)	389, 724, 883, 991
BstMAI	GTCTC	7 cut(s)	356, 478, 841, 1059, 1190, 1199, 1258
BstMBI	GATC	4 cut(s)	386, 721, 880, 988
BstMWI	GCNNNNNNNGC	7 cut(s)	29, 74, 186, 621, 849, 978, 1173
BstNI	CCWGG	1 cut(s)	790
BstNSI	RCATGY	4 cut(s)	180, 430, 952, 976
BstPI	GGTNACC	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	788
BstUI	CGCG	1 cut(s)	940
BstV1I	GCAGC	2 cut(s)	16, 981
BstX2I	RGATCY	1 cut(s)	880
BstYI	RGATCY	1 cut(s)	880
BsuRI	GGCC	4 cut(s)	143, 214, 711, 783
BtgI	CCRYGG	1 cut(s)	995
BtsCI	GGATG	6 cut(s)	62, 462, 591, 991, 1024, 1282
BtsIMutI	CAGTG	1 cut(s)	624
Cac8I	GCNNGC	3 cut(s)	617, 950, 1031
CfoI	GCGC	1 cut(s)	1176
Cfr13I	GGNCC	3 cut(s)	710, 770, 781
Csp6I	GTAC	3 cut(s)	287, 700, 936
CviAII	CATG	9 cut(s)	145, 177, 427, 911, 949, 973, 1168, 1189, 1248
CviQI	GTAC	3 cut(s)	287, 700, 936
DdeI	CTNAG	3 cut(s)	181, 1069, 1260
DpnI	GATC	4 cut(s)	388, 723, 882, 990
DpnII	GATC	4 cut(s)	386, 721, 880, 988
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	4 cut(s)	405, 690, 771, 1017
EarI	CTCTTC	4 cut(s)	405, 690, 771, 1017
Eco130I	CCWWGG	2 cut(s)	412, 844
Eco31I	GGTCTC	1 cut(s)	356
Eco47I	GGWCC	1 cut(s)	770
Eco57I	CTGAAG	1 cut(s)	648
Eco88I	CYCGRG	1 cut(s)	590
Eco91I	GGTNACC	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	781
EcoO65I	GGTNACC	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	788
EcoT14I	CCWWGG	2 cut(s)	412, 844
EcoT22I	ATGCAT	1 cut(s)	1057
ErhI	CCWWGG	2 cut(s)	412, 844
FaeI	CATG	9 cut(s)	148, 180, 430, 914, 952, 976, 1171, 1192, 1251
FalI	AAGNNNNNCTT	3 cut(s)	32, 768, 800
FaqI	GGGAC	2 cut(s)	74, 329
FatI	CATG	9 cut(s)	144, 176, 426, 910, 948, 972, 1167, 1188, 1247
FauI	CCCGC	1 cut(s)	933
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	2 cut(s)	30, 970
FokI	GGATG	6 cut(s)	69, 469, 598, 978, 1031, 1289
Fsp4HI	GCNGC	2 cut(s)	30, 970
FspBI	CTAG	1 cut(s)	1163
GlaI	GCGC	1 cut(s)	1175
GluI	GCNGC	2 cut(s)	30, 970
GsaI	CCCAGC	2 cut(s)	81, 716
GsuI	CTGGAG	3 cut(s)	502, 593, 1080
HaeIII	GGCC	4 cut(s)	143, 214, 711, 783
HhaI	GCGC	1 cut(s)	1176
Hin1II	CATG	9 cut(s)	148, 180, 430, 914, 952, 976, 1171, 1192, 1251
Hin6I	GCGC	1 cut(s)	1174
HinP1I	GCGC	1 cut(s)	1174
HindIII	AAGCTT	1 cut(s)	850
HinfI	GANTC	3 cut(s)	499, 554, 1067
HphI	GGTGA	5 cut(s)	264, 271, 653, 692, 1055
Hpy166II	GTNNAC	2 cut(s)	91, 352
Hpy188I	TCNGA	6 cut(s)	196, 210, 361, 376, 1072, 1261
Hpy188III	TCNNGA	6 cut(s)	183, 420, 610, 725, 734, 1059
Hpy8I	GTNNAC	2 cut(s)	91, 352
HpyAV	CCTTC	6 cut(s)	122, 595, 656, 1034, 1155, 1279
HpyCH4III	ACNGT	4 cut(s)	166, 408, 538, 1210
HpyCH4V	TGCA	6 cut(s)	52, 299, 1033, 1055, 1084, 1192
HpyF10VI	GCNNNNNNNGC	7 cut(s)	29, 74, 186, 621, 849, 978, 1173
HpyF3I	CTNAG	3 cut(s)	181, 1069, 1260
Hsp92II	CATG	9 cut(s)	148, 180, 430, 914, 952, 976, 1171, 1192, 1251
HspAI	GCGC	1 cut(s)	1174
Kzo9I	GATC	4 cut(s)	386, 721, 880, 988
Lsp1109I	GCAGC	2 cut(s)	16, 981
LweI	GCATC	4 cut(s)	236, 480, 576, 1064
MaeI	CTAG	1 cut(s)	1163
MaeIII	GTNAC	6 cut(s)	41, 147, 270, 334, 805, 889
MalI	GATC	4 cut(s)	388, 723, 882, 990
MboI	GATC	4 cut(s)	386, 721, 880, 988
MboII	GAAGA	5 cut(s)	392, 641, 707, 788, 1034
MfeI	CAATTG	2 cut(s)	36, 72
MflI	RGATCY	1 cut(s)	880
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	3 cut(s)	36, 72, 321
MluNI	TGGCCA	1 cut(s)	143
MlyI	GAGTC	1 cut(s)	1061
MmeI	TCCRAC	2 cut(s)	188, 655
Mox20I	TGGCCA	1 cut(s)	143
Mph1103I	ATGCAT	1 cut(s)	1057
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	3 cut(s)	113, 533, 576
MslI	CAYNNNNRTG	1 cut(s)	1252
Msp20I	TGGCCA	1 cut(s)	143
MspA1I	CMGCKG	2 cut(s)	716, 743
MspR9I	CCNGG	1 cut(s)	790
MunI	CAATTG	2 cut(s)	36, 72
MvaI	CCWGG	1 cut(s)	790
MvnI	CGCG	1 cut(s)	940
MwoI	GCNNNNNNNGC	7 cut(s)	29, 74, 186, 621, 849, 978, 1173
NdeII	GATC	4 cut(s)	386, 721, 880, 988
NlaIII	CATG	9 cut(s)	148, 180, 430, 914, 952, 976, 1171, 1192, 1251
NlaIV	GGNNCC	3 cut(s)	772, 882, 1134
NmuCI	GTSAC	3 cut(s)	147, 270, 889
NsiI	ATGCAT	1 cut(s)	1057
NspI	RCATGY	4 cut(s)	180, 430, 952, 976
PaeI	GCATGC	1 cut(s)	952
PaeR7I	CTCGAG	1 cut(s)	590
PfeI	GAWTC	2 cut(s)	499, 554
PkrI	GCNGC	2 cut(s)	31, 971
PleI	GAGTC	1 cut(s)	1061
PpsI	GAGTC	1 cut(s)	1061
Psp6I	CCWGG	1 cut(s)	788
PspEI	GGTNACC	1 cut(s)	270
PspFI	CCCAGC	2 cut(s)	77, 712
PspGI	CCWGG	1 cut(s)	788
PspN4I	GGNNCC	3 cut(s)	772, 882, 1134
PspPI	GGNCC	3 cut(s)	710, 770, 781
PspXI	VCTCGAGB	1 cut(s)	590
PsuI	RGATCY	1 cut(s)	880
PvuII	CAGCTG	2 cut(s)	716, 743
RsaI	GTAC	3 cut(s)	288, 701, 937
RsaNI	GTAC	3 cut(s)	287, 700, 936
RseI	CAYNNNNRTG	1 cut(s)	1252
SaqAI	TTAA	3 cut(s)	113, 533, 576
SatI	GCNGC	2 cut(s)	30, 970
Sau3AI	GATC	4 cut(s)	386, 721, 880, 988
Sau96I	GGNCC	3 cut(s)	710, 770, 781
SchI	GAGTC	1 cut(s)	1061
ScrFI	CCNGG	1 cut(s)	790
SfaNI	GCATC	4 cut(s)	236, 480, 576, 1064
Sfr274I	CTCGAG	1 cut(s)	590
SinI	GGWCC	1 cut(s)	770
SlaI	CTCGAG	1 cut(s)	590
SmiMI	CAYNNNNRTG	1 cut(s)	1252
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
SphI	GCATGC	1 cut(s)	952
Sse9I	AATT	3 cut(s)	36, 72, 321
SsiI	CCGC	3 cut(s)	332, 366, 940
SspMI	CTAG	1 cut(s)	1163
StyD4I	CCNGG	1 cut(s)	788
StyI	CCWWGG	2 cut(s)	412, 844
TaaI	ACNGT	4 cut(s)	166, 408, 538, 1210
TaqI	TCGA	3 cut(s)	562, 591, 660
TasI	AATT	3 cut(s)	36, 72, 321
TatI	WGTACW	2 cut(s)	286, 699
TfiI	GAWTC	2 cut(s)	499, 554
Tru1I	TTAA	3 cut(s)	113, 533, 576
Tru9I	TTAA	3 cut(s)	113, 533, 576
TscAI	CASTG	1 cut(s)	631
TseFI	GTSAC	3 cut(s)	147, 270, 889
TseI	GCWGC	2 cut(s)	29, 969
Tsp45I	GTSAC	3 cut(s)	147, 270, 889
TspDTI	ATGAA	3 cut(s)	17, 927, 1035
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	631
VpaK11BI	GGWCC	1 cut(s)	770
XceI	RCATGY	4 cut(s)	180, 430, 952, 976
XcmI	CCANNNNNNNNNTGG	1 cut(s)	617
XhoI	CTCGAG	1 cut(s)	590
XmiI	GTMKAC	1 cut(s)	351
XspI	CTAG	1 cut(s)	1163
Zsp2I	ATGCAT	1 cut(s)	1057

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.