Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007806.1

Orthogroup ID

OG0003263

Physical Location & Seq

Genomic Coordinates Forward (+)

84098 .. 85926

Gene Structure 1829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007806.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgaagggagctgcgcttgtggcttttgctgctacaattggtaactttctgcaaggatgggacaatgctacaattgctggggctattgtttacatcacggacgattttgatttaggtagctcggtagaaggtcttgttgtggccatgtcactcatcggggcaacagttattacaacatgctcaagagccatatcagattggcttggtcggaggccaatgctaatagcatcatcagttctttattttgtgagtggcttggtgatgttgtggtcacccaatgttaccccaagctttggcgatttgaaccatttgatttctgctaccatgtctggtgtgacttgctgtttgaggttccctgggcaactcaactctgacctcagaaagttggctgtcaatctcattccattcccccgtctccactttttcattccattcctggtgggatgttttaatgcagaaaaagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

155

Amino Acids

16.62

Weight (kDa)

6.69

Isoelectric Point (pI)

33.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003263)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10110
malus_domestica	MD02G1109100.v1.1 MD02G1109500.v1.1 MD15G1228300.v1.1
prunus_persica	Prupe.7G186000_v2.0.a1
pyrus_communis	pycom15g20340
rosa_chinensis	RchiOBHm_Chr1g0348791 RchiOBHm_Chr2g0096881 RchiOBHm_Chr2g0147991 RchiOBHm_Chr4g0410581 RchiOBHm_Chr7g0216381
rosa_laevigata	RLG00000016678
rosa_multiflora	Rmu_sc0000692.1_g000002 Rmu_sc0003743.1_g000031 Rmu_sc0007264.1_g000009 Rmu_sc0007806.1_g000019 Rmu_ssc0000215.1_g000006 Rmu_ssc0000433.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145190
rosa_rugosa	Rorug02G0061700
rosa_samantha	Rh1AG316900 Rh2AG109400 Rh2AG598500 Rh2BG111400 Rh2CG113500 Rh2DG112500 Rh4CG174300 Rh5BG370000 Rh5DG336900 Rh5DG401500 Rh5DG401600 Rh6DG244100 Rh7DG300200
rosa_wichuraiana	Rw1G028090 Rw2G008450 Rw7G025410 Rw7G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	293
AcoI	YGGCCR	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	293
AgsI	TTSAA	1 cut(s)	304
AjnI	CCWGG	2 cut(s)	355, 435
AluBI	AGCT	3 cut(s)	11, 120, 291
AluI	AGCT	3 cut(s)	11, 120, 291
Alw26I	GTCTC	1 cut(s)	419
AoxI	GGCC	2 cut(s)	141, 212
ApeKI	GCWGC	2 cut(s)	11, 29
ArsI	GACNNNNNNTTYG	2 cut(s)	328, 360
AspLEI	GCGC	1 cut(s)	16
AsuHPI	GGTGA	2 cut(s)	264, 271
BalI	TGGCCA	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	1 cut(s)	51
BciT130I	CCWGG	2 cut(s)	357, 437
BcoDI	GTCTC	1 cut(s)	419
BisI	GCNGC	2 cut(s)	12, 30
BlsI	GCNGC	2 cut(s)	13, 31
Bme1390I	CCNGG	2 cut(s)	357, 437
BmiI	GGNNCC	1 cut(s)	353
BmrFI	CCNGG	2 cut(s)	357, 437
BmsI	GCATC	1 cut(s)	236
BpuEI	CTTGAG	1 cut(s)	166
BsaJI	CCNNGG	2 cut(s)	355, 356
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
BseBI	CCWGG	2 cut(s)	357, 437
BseDI	CCNNGG	2 cut(s)	355, 356
BseGI	GGATG	2 cut(s)	62, 449
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseMII	CTCAG	1 cut(s)	391
BseXI	GCAGC	1 cut(s)	16
BseYI	CCCAGC	1 cut(s)	77
BshFI	GGCC	2 cut(s)	143, 214
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmAI	GTCTC	1 cut(s)	419
BsmBI	CGTCTC	1 cut(s)	419
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	2 cut(s)	143, 214
BspANI	GGCC	2 cut(s)	143, 214
BspCNI	CTCAG	1 cut(s)	390
BspLI	GGNNCC	1 cut(s)	353
BssECI	CCNNGG	2 cut(s)	355, 356
Bst2UI	CCWGG	2 cut(s)	357, 437
Bst4CI	ACNGT	1 cut(s)	166
BstDEI	CTNAG	1 cut(s)	377
BstEII	GGTNACC	1 cut(s)	270
BstF5I	GGATG	2 cut(s)	62, 449
BstHHI	GCGC	1 cut(s)	16
BstMAI	GTCTC	1 cut(s)	419
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 29, 74
BstNI	CCWGG	2 cut(s)	357, 437
BstNSI	RCATGY	1 cut(s)	180
BstPI	GGTNACC	1 cut(s)	270
BstSCI	CCNGG	2 cut(s)	355, 435
BstV1I	GCAGC	1 cut(s)	16
BsuRI	GGCC	2 cut(s)	143, 214
BtsCI	GGATG	2 cut(s)	62, 449
CfoI	GCGC	1 cut(s)	16
CviAII	CATG	3 cut(s)	145, 177, 325
DdeI	CTNAG	1 cut(s)	377
EaeI	YGGCCR	1 cut(s)	141
Eco91I	GGTNACC	1 cut(s)	270
EcoO65I	GGTNACC	1 cut(s)	270
EcoRII	CCWGG	2 cut(s)	355, 435
Esp3I	CGTCTC	1 cut(s)	419
FaeI	CATG	3 cut(s)	148, 180, 328
FaiI	YATR	4 cut(s)	146, 178, 191, 326
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	3 cut(s)	144, 176, 324
Fnu4HI	GCNGC	2 cut(s)	12, 30
FokI	GGATG	2 cut(s)	69, 456
Fsp4HI	GCNGC	2 cut(s)	12, 30
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	2 cut(s)	12, 30
GsaI	CCCAGC	1 cut(s)	81
HaeIII	GGCC	2 cut(s)	143, 214
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	3 cut(s)	148, 180, 328
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HindIII	AAGCTT	1 cut(s)	289
HphI	GGTGA	2 cut(s)	264, 271
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	4 cut(s)	196, 210, 373, 380
Hpy188III	TCNNGA	1 cut(s)	183
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	122
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	2 cut(s)	52, 455
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 29, 74
HpyF3I	CTNAG	1 cut(s)	377
Hsp92II	CATG	3 cut(s)	148, 180, 328
HspAI	GCGC	1 cut(s)	14
LmnI	GCTCC	1 cut(s)	8
LpnPI	CCDG	6 cut(s)	63, 315, 342, 369, 422, 449
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	1 cut(s)	236
MaeIII	GTNAC	5 cut(s)	41, 147, 270, 280, 334
MfeI	CAATTG	2 cut(s)	36, 72
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	2 cut(s)	36, 72
MluNI	TGGCCA	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	188
MnlI	CCTC	3 cut(s)	204, 342, 386
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	1 cut(s)	450
Msp20I	TGGCCA	1 cut(s)	143
MspR9I	CCNGG	2 cut(s)	357, 437
MunI	CAATTG	2 cut(s)	36, 72
MvaI	CCWGG	2 cut(s)	357, 437
MwoI	GCNNNNNNNGC	3 cut(s)	20, 29, 74
NlaIII	CATG	3 cut(s)	148, 180, 328
NlaIV	GGNNCC	1 cut(s)	353
NmuCI	GTSAC	3 cut(s)	147, 270, 334
NspI	RCATGY	1 cut(s)	180
PasI	CCCWGGG	1 cut(s)	356
PflMI	CCANNNNNTGG	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	13, 31
Psp6I	CCWGG	2 cut(s)	355, 435
PspEI	GGTNACC	1 cut(s)	270
PspFI	CCCAGC	1 cut(s)	77
PspGI	CCWGG	2 cut(s)	355, 435
PspN4I	GGNNCC	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	2 cut(s)	12, 30
ScrFI	CCNGG	2 cut(s)	357, 437
SetI	ASST	7 cut(s)	13, 118, 122, 133, 293, 353, 378
SfaNI	GCATC	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
Sse9I	AATT	2 cut(s)	36, 72
StyD4I	CCNGG	2 cut(s)	355, 435
TaaI	ACNGT	1 cut(s)	166
TasI	AATT	2 cut(s)	36, 72
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TseFI	GTSAC	3 cut(s)	147, 270, 334
TseI	GCWGC	2 cut(s)	11, 29
Tsp45I	GTSAC	3 cut(s)	147, 270, 334
TspDTI	ATGAA	2 cut(s)	17, 415
TspGWI	ACGGA	1 cut(s)	113
Van91I	CCANNNNNTGG	1 cut(s)	293
XceI	RCATGY	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.