Rh4CG174300
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Forward (+)
38013128 .. 38013966
839 bp
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UTR
Exon/CDS
Intron
Rh4CG174300.1

Sequence Viewer

Length: 660 bp
ATGAAGGAAGCTGTGCTTGTGGCTTTTGCTGCTACAATTGGTAACTTTCTGCAAGGATGGGACAATGCTACAATTGCTGGGGCTATTGTTTACATCACGGACGATTTTGATTTAAGTAGCTCGGTAGAAGGTCTTGTTGTGGCCATGTCACTCATTGGGGCAACAGTTATTACAACATGCTCAGGAGGCATATCAGATTGGCTTGGTCGGAGGCCAATGCTAATAGCATCATCAGTTCTTTATTTTGTGAGTGGCTTGGTGATGTTGTGGTCACCCAATGTGTATGTACTATGTCTTGCAAGGCTATTAGATGGATTTGGAATTGGTTTAGCGGTTACTCTTGTCCCAGTCTACATATCCGAGACCGCCCCATCAGATATAAGGGGATCGTTGAATACTCTTCCACAGTTCCTTGGTTCAGGAGGCATGTTTTTGTCATATTGTATGGTTTTTGGGATGTCGCTGTTAGCCTTGCCAAGCTGGAGACTGATGCTTGGGATTCTTTCTATTCTCTCTCTTATATATTTTGTATTAACCGTGTTTTACTTACCTGAATCTCCTCGATGGCTTGTGATTAAGGGCAGGATGCTCGAGGCAAAGAAGGTTCTCCAGAGCTTGCGTGGCACTGAAGATGTTTCTGGTTTGTTGCTTATTCTCTGA

Protein Analysis

219

Amino Acids

23.61

Weight (kDa)

5.04

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 7 - 213 5.1e-48 Sugar (and other) transporter
MFS_1 PF07690 12 - 193 7.4e-24 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 351
AciI CCGC 2 cut(s) 332, 366
AclWI GGATC 1 cut(s) 394
AcoI YGGCCR 1 cut(s) 141
AcuI CTGAAG 1 cut(s) 648
AfaI GTAC 1 cut(s) 288
AgsI TTSAA 1 cut(s) 394
AluBI AGCT 4 cut(s) 11, 120, 480, 615
AluI AGCT 4 cut(s) 11, 120, 480, 615
Alw26I GTCTC 2 cut(s) 356, 478
AlwI GGATC 1 cut(s) 394
Ama87I CYCGRG 1 cut(s) 590
AoxI GGCC 2 cut(s) 141, 212
ApeKI GCWGC 1 cut(s) 29
AsuHPI GGTGA 2 cut(s) 264, 271
AvaI CYCGRG 1 cut(s) 590
BalI TGGCCA 1 cut(s) 143
BbvI GCAGC 1 cut(s) 16
BccI CCATC 4 cut(s) 51, 305, 379, 558
BcgI CGANNNNNNTGC 2 cut(s) 571, 605
BcoDI GTCTC 2 cut(s) 356, 478
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
BmeT110I CYCGRG 1 cut(s) 590
BmrI ACTGGG 1 cut(s) 341
BmsI GCATC 3 cut(s) 236, 480, 576
BmuI ACTGGG 1 cut(s) 341
BpmI CTGGAG 2 cut(s) 502, 593
Bpu10I CCTNAGC 1 cut(s) 181
BsaI GGTCTC 1 cut(s) 356
BsaJI CCNNGG 1 cut(s) 412
Bse1I ACTGG 1 cut(s) 347
BseDI CCNNGG 1 cut(s) 412
BseGI GGATG 3 cut(s) 62, 462, 591
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 347
BseRI GAGGAG 1 cut(s) 549
BseXI GCAGC 1 cut(s) 16
BseYI CCCAGC 1 cut(s) 77
BshFI GGCC 2 cut(s) 143, 214
BsiHKCI CYCGRG 1 cut(s) 590
BslFI GGGAC 2 cut(s) 74, 329
BsmAI GTCTC 2 cut(s) 356, 478
BsmFI GGGAC 2 cut(s) 74, 329
BsnI GGCC 2 cut(s) 143, 214
Bso31I GGTCTC 1 cut(s) 356
BsoBI CYCGRG 1 cut(s) 590
Bsp143I GATC 1 cut(s) 386
BspACI CCGC 2 cut(s) 332, 366
BspANI GGCC 2 cut(s) 143, 214
BspCNI CTCAG 1 cut(s) 194
BspPI GGATC 1 cut(s) 394
BspTNI GGTCTC 1 cut(s) 356
BsrI ACTGG 1 cut(s) 347
BssECI CCNNGG 1 cut(s) 412
BssMI GATC 1 cut(s) 386
BssT1I CCWWGG 1 cut(s) 412
Bst4CI ACNGT 3 cut(s) 166, 408, 538
Bst6I CTCTTC 1 cut(s) 405
BstC8I GCNNGC 1 cut(s) 617
BstDEI CTNAG 1 cut(s) 181
BstEII GGTNACC 1 cut(s) 270
BstF5I GGATG 3 cut(s) 62, 462, 591
BstKTI GATC 1 cut(s) 389
BstMAI GTCTC 2 cut(s) 356, 478
BstMBI GATC 1 cut(s) 386
BstMWI GCNNNNNNNGC 4 cut(s) 29, 74, 186, 621
BstNSI RCATGY 2 cut(s) 180, 430
BstPI GGTNACC 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 16
BsuRI GGCC 2 cut(s) 143, 214
BtsCI GGATG 3 cut(s) 62, 462, 591
BtsIMutI CAGTG 1 cut(s) 624
Cac8I GCNNGC 1 cut(s) 617
Csp6I GTAC 1 cut(s) 287
CviAII CATG 3 cut(s) 145, 177, 427
CviQI GTAC 1 cut(s) 287
DdeI CTNAG 1 cut(s) 181
DpnI GATC 1 cut(s) 388
DpnII GATC 1 cut(s) 386
EaeI YGGCCR 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco130I CCWWGG 1 cut(s) 412
Eco31I GGTCTC 1 cut(s) 356
Eco57I CTGAAG 1 cut(s) 648
Eco88I CYCGRG 1 cut(s) 590
Eco91I GGTNACC 1 cut(s) 270
EcoO65I GGTNACC 1 cut(s) 270
EcoT14I CCWWGG 1 cut(s) 412
ErhI CCWWGG 1 cut(s) 412
FaeI CATG 3 cut(s) 148, 180, 430
FalI AAGNNNNNCTT 1 cut(s) 32
FaqI GGGAC 2 cut(s) 74, 329
FatI CATG 3 cut(s) 144, 176, 426
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 3 cut(s) 69, 469, 598
Fsp4HI GCNGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 30
GsaI CCCAGC 1 cut(s) 81
GsuI CTGGAG 2 cut(s) 502, 593
HaeIII GGCC 2 cut(s) 143, 214
Hin1II CATG 3 cut(s) 148, 180, 430
HinfI GANTC 2 cut(s) 499, 554
HphI GGTGA 2 cut(s) 264, 271
Hpy166II GTNNAC 2 cut(s) 91, 352
Hpy188I TCNGA 5 cut(s) 196, 210, 361, 376, 659
Hpy188III TCNNGA 3 cut(s) 183, 420, 610
Hpy8I GTNNAC 2 cut(s) 91, 352
HpyAV CCTTC 2 cut(s) 122, 595
HpyCH4III ACNGT 3 cut(s) 166, 408, 538
HpyCH4V TGCA 2 cut(s) 52, 299
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 74, 186, 621
HpyF3I CTNAG 1 cut(s) 181
Hsp92II CATG 3 cut(s) 148, 180, 430
Kzo9I GATC 1 cut(s) 386
LpnPI CCDG 9 cut(s) 63, 168, 360, 405, 466, 564, 568, 623, 624
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 3 cut(s) 236, 480, 576
MaeIII GTNAC 4 cut(s) 41, 147, 270, 334
MalI GATC 1 cut(s) 388
MboI GATC 1 cut(s) 386
MboII GAAGA 2 cut(s) 392, 641
MfeI CAATTG 2 cut(s) 36, 72
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 3 cut(s) 36, 72, 321
MluNI TGGCCA 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 188
MnlI CCTC 5 cut(s) 179, 204, 416, 570, 586
Mox20I TGGCCA 1 cut(s) 143
MscI TGGCCA 1 cut(s) 143
MseI TTAA 3 cut(s) 113, 533, 576
Msp20I TGGCCA 1 cut(s) 143
MunI CAATTG 2 cut(s) 36, 72
MwoI GCNNNNNNNGC 4 cut(s) 29, 74, 186, 621
NdeII GATC 1 cut(s) 386
NlaIII CATG 3 cut(s) 148, 180, 430
NmuCI GTSAC 2 cut(s) 147, 270
NspI RCATGY 2 cut(s) 180, 430
PaeR7I CTCGAG 1 cut(s) 590
PfeI GAWTC 2 cut(s) 499, 554
PkrI GCNGC 1 cut(s) 31
PspEI GGTNACC 1 cut(s) 270
PspFI CCCAGC 1 cut(s) 77
PspXI VCTCGAGB 1 cut(s) 590
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
SaqAI TTAA 3 cut(s) 113, 533, 576
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 1 cut(s) 386
SetI ASST 7 cut(s) 13, 122, 133, 482, 553, 606, 617
SfaNI GCATC 3 cut(s) 236, 480, 576
Sfr274I CTCGAG 1 cut(s) 590
SlaI CTCGAG 1 cut(s) 590
SmlI CTYRAG 1 cut(s) 590
SmoI CTYRAG 1 cut(s) 590
Sse9I AATT 3 cut(s) 36, 72, 321
SsiI CCGC 2 cut(s) 332, 366
StyI CCWWGG 1 cut(s) 412
TaaI ACNGT 3 cut(s) 166, 408, 538
TaqI TCGA 2 cut(s) 562, 591
TasI AATT 3 cut(s) 36, 72, 321
TatI WGTACW 1 cut(s) 286
TfiI GAWTC 2 cut(s) 499, 554
Tru1I TTAA 3 cut(s) 113, 533, 576
Tru9I TTAA 3 cut(s) 113, 533, 576
TscAI CASTG 1 cut(s) 631
TseFI GTSAC 2 cut(s) 147, 270
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 2 cut(s) 147, 270
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 1 cut(s) 631
XceI RCATGY 2 cut(s) 180, 430
XcmI CCANNNNNNNNNTGG 1 cut(s) 617
XhoI CTCGAG 1 cut(s) 590
XmiI GTMKAC 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.