Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003263

Physical Location & Seq

Genomic Coordinates Forward (+)

14529487 .. 14530210

Gene Structure 724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g20340.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAGGGGAGCTGTTTTCGTAGCGGTTGCTGCAGCTATTGGGAACCTGTTGCAAGGATGGGATAATTCAGTCATTGCAGGATCTGTTCTTTATATCAAAAAGGAATTTGAATTGGAAAGTGAACCAACATTTGAAGGGCTAATCGCAGCCTCATCGCTCATTGGAGCCACATTCATAACAACATTCTCTGGACCGGCATCAGACTGGCTAGGGCGGCGTACAATGCTAATCATTTCATCGGTTCTTTTCTTCATTAGTGGTCTGGTAATGTTATTGTCCCCCAATGTTTACGTCTTACTTTTCGCGAGGCTACTAGGCGGATTTGGAACTGGTCTGGCTGTTACACTTGTGCCTGCCTATATATCTGAGATAGCACCCCCTGATATAAGAGGACGGTTGAATACCCTTCCACAGTTCACAGGCTCTGGTGGGATGTTCCTGTCCTATTGCATGGTGTTTGGAATGTCACTGATGGATTTGCCGAACTGGAGATTAATGCTAGGAGTTGTTTCCATTCCATCTCTACTTTATTTCGCTTTAACGGTGTTTTACCTGCCCGAATCCCCTAGATGGCTTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

194

Amino Acids

20.9

Weight (kDa)

5.33

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003263)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10110
malus_domestica	MD02G1109100.v1.1 MD02G1109500.v1.1 MD15G1228300.v1.1
prunus_persica	Prupe.7G186000_v2.0.a1
pyrus_communis	pycom15g20340
rosa_chinensis	RchiOBHm_Chr1g0348791 RchiOBHm_Chr2g0096881 RchiOBHm_Chr2g0147991 RchiOBHm_Chr4g0410581 RchiOBHm_Chr7g0216381
rosa_laevigata	RLG00000016678
rosa_multiflora	Rmu_sc0000692.1_g000002 Rmu_sc0003743.1_g000031 Rmu_sc0007264.1_g000009 Rmu_sc0007806.1_g000019 Rmu_ssc0000215.1_g000006 Rmu_ssc0000433.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145190
rosa_rugosa	Rorug02G0061700
rosa_samantha	Rh1AG316900 Rh2AG109400 Rh2AG598500 Rh2BG111400 Rh2CG113500 Rh2DG112500 Rh4CG174300 Rh5BG370000 Rh5DG336900 Rh5DG401500 Rh5DG401600 Rh6DG244100 Rh7DG300200
rosa_wichuraiana	Rw1G028090 Rw2G008450 Rw7G025410 Rw7G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	561
AccII	CGCG	1 cut(s)	305
AciI	CCGC	3 cut(s)	23, 214, 318
AclWI	GGATC	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	104
AfaI	GTAC	1 cut(s)	220
AfiI	CCNNNNNNNGG	1 cut(s)	570
AgsI	TTSAA	3 cut(s)	110, 134, 400
AluBI	AGCT	2 cut(s)	11, 35
AluI	AGCT	2 cut(s)	11, 35
AlwI	GGATC	1 cut(s)	88
AlwNI	CAGNNNCTG	2 cut(s)	83, 425
ApeKI	GCWGC	3 cut(s)	29, 32, 146
ApoI	RAATTY	1 cut(s)	104
AseI	ATTAAT	1 cut(s)	494
AspS9I	GGNCC	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	191
BbvI	GCAGC	3 cut(s)	16, 44, 158
BccI	CCATC	4 cut(s)	51, 466, 526, 564
BcgI	CGANNNNNNTGC	2 cut(s)	135, 169
BfaI	CTAG	4 cut(s)	209, 314, 500, 567
BfmI	CTRYAG	1 cut(s)	30
BfuAI	ACCTGC	1 cut(s)	561
BisI	GCNGC	4 cut(s)	30, 33, 147, 215
BlsI	GCNGC	4 cut(s)	31, 34, 148, 216
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	2 cut(s)	44, 166
BmsI	GCATC	1 cut(s)	206
BpmI	CTGGAG	1 cut(s)	508
Bsc4I	CCNNNNNNNGG	1 cut(s)	570
Bse118I	RCCGGY	1 cut(s)	193
Bse1I	ACTGG	3 cut(s)	209, 334, 491
Bse3DI	GCAATG	1 cut(s)	72
BseGI	GGATG	2 cut(s)	62, 438
BseLI	CCNNNNNNNGG	1 cut(s)	570
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	3 cut(s)	209, 334, 491
BseXI	GCAGC	3 cut(s)	16, 44, 158
Bsh1236I	CGCG	1 cut(s)	305
BsiSI	CCGG	1 cut(s)	194
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	1 cut(s)	570
BsmFI	GGGAC	1 cut(s)	262
Bsp143I	GATC	1 cut(s)	80
Bsp68I	TCGCGA	1 cut(s)	305
BspACI	CCGC	3 cut(s)	23, 214, 318
BspCNI	CTCAG	1 cut(s)	358
BspFNI	CGCG	1 cut(s)	305
BspLI	GGNNCC	2 cut(s)	44, 166
BspMAI	CTGCAG	1 cut(s)	34
BspMI	ACCTGC	1 cut(s)	561
BspPI	GGATC	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	72
BsrFI	RCCGGY	1 cut(s)	193
BsrI	ACTGG	3 cut(s)	209, 334, 491
BssAI	RCCGGY	1 cut(s)	193
BssMI	GATC	1 cut(s)	80
Bst4CI	ACNGT	3 cut(s)	396, 414, 544
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	1 cut(s)	366
BstF5I	GGATG	2 cut(s)	62, 438
BstFNI	CGCG	1 cut(s)	305
BstKTI	GATC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	80
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 214, 223
BstSFI	CTRYAG	1 cut(s)	30
BstUI	CGCG	1 cut(s)	305
BstV1I	GCAGC	3 cut(s)	16, 44, 158
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BtgZI	GCGATG	1 cut(s)	138
BtsCI	GGATG	2 cut(s)	62, 438
BtsIMutI	CAGTG	1 cut(s)	467
BtuMI	TCGCGA	1 cut(s)	305
BveI	ACCTGC	1 cut(s)	561
Cac8I	GCNNGC	1 cut(s)	354
CaiI	CAGNNNCTG	2 cut(s)	83, 425
Cfr10I	RCCGGY	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	219
CviAII	CATG	1 cut(s)	451
CviQI	GTAC	1 cut(s)	219
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	1 cut(s)	82
DpnII	GATC	1 cut(s)	80
EciI	GGCGGA	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	191
FaeI	CATG	1 cut(s)	454
FaiI	YATR	6 cut(s)	93, 176, 360, 362, 386, 452
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	1 cut(s)	450
Fnu4HI	GCNGC	4 cut(s)	30, 33, 147, 215
FokI	GGATG	2 cut(s)	69, 445
Fsp4HI	GCNGC	4 cut(s)	30, 33, 147, 215
FspBI	CTAG	4 cut(s)	209, 314, 500, 567
GluI	GCNGC	4 cut(s)	30, 33, 147, 215
GsuI	CTGGAG	1 cut(s)	508
HapII	CCGG	1 cut(s)	194
Hin1II	CATG	1 cut(s)	454
HinfI	GANTC	1 cut(s)	560
HpaII	CCGG	1 cut(s)	194
Hpy166II	GTNNAC	3 cut(s)	122, 289, 417
Hpy188I	TCNGA	2 cut(s)	202, 367
Hpy188III	TCNNGA	2 cut(s)	189, 304
Hpy8I	GTNNAC	3 cut(s)	122, 289, 417
HpyAV	CCTTC	2 cut(s)	128, 416
HpyCH4III	ACNGT	3 cut(s)	396, 414, 544
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	4 cut(s)	32, 52, 77, 450
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 214, 223
HpyF3I	CTNAG	1 cut(s)	366
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	1 cut(s)	454
Kzo9I	GATC	1 cut(s)	80
LmnI	GCTCC	2 cut(s)	8, 164
Lsp1109I	GCAGC	3 cut(s)	16, 44, 158
LweI	GCATC	1 cut(s)	206
MaeI	CTAG	4 cut(s)	209, 314, 500, 567
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	2 cut(s)	340, 465
MalI	GATC	1 cut(s)	82
MboI	GATC	1 cut(s)	80
MboII	GAAGA	1 cut(s)	241
MflI	RGATCY	1 cut(s)	80
MluCI	AATT	3 cut(s)	64, 104, 110
MnlI	CCTC	3 cut(s)	160, 300, 383
MseI	TTAA	3 cut(s)	494, 539, 580
MspI	CCGG	1 cut(s)	194
MvnI	CGCG	1 cut(s)	305
MwoI	GCNNNNNNNGC	3 cut(s)	29, 214, 223
NdeII	GATC	1 cut(s)	80
NlaIII	CATG	1 cut(s)	454
NlaIV	GGNNCC	2 cut(s)	44, 166
NmuCI	GTSAC	1 cut(s)	465
NruI	TCGCGA	1 cut(s)	305
PfeI	GAWTC	1 cut(s)	560
PkrI	GCNGC	4 cut(s)	31, 34, 148, 216
PshBI	ATTAAT	1 cut(s)	494
PspN4I	GGNNCC	2 cut(s)	44, 166
PspPI	GGNCC	1 cut(s)	191
PstI	CTGCAG	1 cut(s)	34
PstNI	CAGNNNCTG	2 cut(s)	83, 425
PsuI	RGATCY	1 cut(s)	80
RruI	TCGCGA	1 cut(s)	305
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
SaqAI	TTAA	3 cut(s)	494, 539, 580
SatI	GCNGC	4 cut(s)	30, 33, 147, 215
Sau3AI	GATC	1 cut(s)	80
Sau96I	GGNCC	1 cut(s)	191
SetI	ASST	5 cut(s)	13, 37, 48, 294, 555
SfaNI	GCATC	1 cut(s)	206
SfcI	CTRYAG	1 cut(s)	30
SinI	GGWCC	1 cut(s)	191
Sse9I	AATT	3 cut(s)	64, 104, 110
SsiI	CCGC	3 cut(s)	23, 214, 318
SspMI	CTAG	4 cut(s)	209, 314, 500, 567
TaaI	ACNGT	3 cut(s)	396, 414, 544
TaiI	ACGT	1 cut(s)	294
TasI	AATT	3 cut(s)	64, 104, 110
TauI	GCSGC	1 cut(s)	217
TfiI	GAWTC	1 cut(s)	560
Tru1I	TTAA	3 cut(s)	494, 539, 580
Tru9I	TTAA	3 cut(s)	494, 539, 580
TscAI	CASTG	1 cut(s)	474
TseFI	GTSAC	1 cut(s)	465
TseI	GCWGC	3 cut(s)	29, 32, 146
Tsp45I	GTSAC	1 cut(s)	465
TspDTI	ATGAA	3 cut(s)	163, 225, 241
TspRI	CASTG	1 cut(s)	474
VpaK11BI	GGWCC	1 cut(s)	191
VspI	ATTAAT	1 cut(s)	494
XapI	RAATTY	1 cut(s)	104
XspI	CTAG	4 cut(s)	209, 314, 500, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.