Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003263

Physical Location & Seq

Genomic Coordinates Reverse (-)

33967944 .. 33970021

Gene Structure 2078 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19361

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGGACAATGCTGCAATTGCTGGCTCTGGGCTATTGTTTACATCACGGACGATTTTGATTTAAGTAGCTCAGTAGAAGGTCTTGTTGTGGCCATGTCAGTCATCGGGGCAACAGTTATTACAACATGCTCAGGAGGCATATCAGATTGGCTTGGTCGGAGGCCAATGCTAATAGCATCATCAGTTCTTTATTTTGTGAGTGGCTTGGTGATGTTGTGGTCACCCAATGTGTATGTACTATGTCTTGCAAGGCTATTAGATGGATTTGGAATTGGTTTAGCGGTTACTCTTGTCCCAGTCCACATATCCGAGACCGCCCCATCAGATATAAGGGGATTGTTGAATACTCTTCCACAGTTCCTTGGTTCAGGAGGCATGTTTTTGTCATATTGTATGGTTTTCGGGATGTCGCTGTTGGCCTCGCCAAGCTGGAGACTGATGCTTGGGATTCTTTCCATTCTCTCTCTTATATATTTTGTATTAACCGTGTTTTACTTGCCTGAATCTCCTCGATGGCTTGTGAGTAAGGGCAGGATGCTCGAGGCAAAGAAGGTTCTCCAGAGCTTGCGTGGCACTGAAGATGTTTCTGGTGAGATGGCTTTGCTTGTCGAAGGTCTTGGAGATGAAACATCTTTAGAAGAGGCCCAGCTGATGATCTTGATGGTCAGGAAACAGCTGACAAAGACAAAATCAGGTTATATGGACCCGAAGAGGGCCTTTCCTGGGTTGCCGGACCTGCAACTGGGCAGGGTTCATTTGTCAGTCTTGTCTCTCGCCAAGGAAGCTTGGCAACCCAGAATGTGCGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

269

Amino Acids

29.47

Weight (kDa)

6.13

Isoelectric Point (pI)

51.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	12 - 178	4.8e-22	Major Facilitator Superfamily
Sugar_tr	PF00083	22 - 215	1.2e-45	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003263)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10110
malus_domestica	MD02G1109100.v1.1 MD02G1109500.v1.1 MD15G1228300.v1.1
prunus_persica	Prupe.7G186000_v2.0.a1
pyrus_communis	pycom15g20340
rosa_chinensis	RchiOBHm_Chr1g0348791 RchiOBHm_Chr2g0096881 RchiOBHm_Chr2g0147991 RchiOBHm_Chr4g0410581 RchiOBHm_Chr7g0216381
rosa_laevigata	RLG00000016678
rosa_multiflora	Rmu_sc0000692.1_g000002 Rmu_sc0003743.1_g000031 Rmu_sc0007264.1_g000009 Rmu_sc0007806.1_g000019 Rmu_ssc0000215.1_g000006 Rmu_ssc0000433.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145190
rosa_rugosa	Rorug02G0061700
rosa_samantha	Rh1AG316900 Rh2AG109400 Rh2AG598500 Rh2BG111400 Rh2CG113500 Rh2DG112500 Rh4CG174300 Rh5BG370000 Rh5DG336900 Rh5DG401500 Rh5DG401600 Rh6DG244100 Rh7DG300200
rosa_wichuraiana	Rw1G028090 Rw2G008450 Rw7G025410 Rw7G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	744
AciI	CCGC	2 cut(s)	281, 315
AcoI	YGGCCR	1 cut(s)	90
AcuI	CTGAAG	1 cut(s)	597
AfaI	GTAC	1 cut(s)	237
AfiI	CCNNNNNNNGG	3 cut(s)	712, 723, 742
AgsI	TTSAA	1 cut(s)	343
AjnI	CCWGG	1 cut(s)	721
AluBI	AGCT	6 cut(s)	69, 429, 564, 649, 676, 785
AluI	AGCT	6 cut(s)	69, 429, 564, 649, 676, 785
Alw26I	GTCTC	3 cut(s)	305, 427, 774
Ama87I	CYCGRG	1 cut(s)	539
AoxI	GGCC	5 cut(s)	90, 161, 417, 642, 714
ApeKI	GCWGC	1 cut(s)	12
AspS9I	GGNCC	4 cut(s)	643, 703, 714, 733
AsuHPI	GGTGA	3 cut(s)	213, 220, 602
AvaI	CYCGRG	1 cut(s)	539
AvaII	GGWCC	2 cut(s)	703, 733
BalI	TGGCCA	1 cut(s)	92
BccI	CCATC	5 cut(s)	254, 328, 507, 589, 655
BcgI	CGANNNNNNTGC	2 cut(s)	520, 554
BciT130I	CCWGG	1 cut(s)	723
BcoDI	GTCTC	3 cut(s)	305, 427, 774
BfuAI	ACCTGC	1 cut(s)	744
BisI	GCNGC	1 cut(s)	13
BlsI	GCNGC	1 cut(s)	14
Bme1390I	CCNGG	1 cut(s)	723
Bme18I	GGWCC	2 cut(s)	703, 733
BmeT110I	CYCGRG	1 cut(s)	539
BmgT120I	GGNCC	4 cut(s)	643, 703, 714, 733
BmiI	GGNNCC	1 cut(s)	705
BmrFI	CCNGG	1 cut(s)	723
BmrI	ACTGGG	2 cut(s)	290, 752
BmsI	GCATC	3 cut(s)	185, 429, 525
BmuI	ACTGGG	2 cut(s)	290, 752
BpmI	CTGGAG	2 cut(s)	451, 542
Bpu10I	CCTNAGC	1 cut(s)	130
BsaI	GGTCTC	1 cut(s)	305
BsaJI	CCNNGG	3 cut(s)	361, 722, 777
Bsc4I	CCNNNNNNNGG	3 cut(s)	712, 723, 742
Bse1I	ACTGG	2 cut(s)	296, 747
BseBI	CCWGG	1 cut(s)	723
BseDI	CCNNGG	3 cut(s)	361, 722, 777
BseGI	GGATG	2 cut(s)	411, 540
BseLI	CCNNNNNNNGG	3 cut(s)	712, 723, 742
BseMII	CTCAG	2 cut(s)	84, 144
BseNI	ACTGG	2 cut(s)	296, 747
BseRI	GAGGAG	1 cut(s)	498
BseYI	CCCAGC	1 cut(s)	645
BshFI	GGCC	5 cut(s)	92, 163, 419, 644, 716
BsiHKCI	CYCGRG	1 cut(s)	539
BsiSI	CCGG	1 cut(s)	731
BslFI	GGGAC	2 cut(s)	18, 278
BslI	CCNNNNNNNGG	3 cut(s)	712, 723, 742
BsmAI	GTCTC	3 cut(s)	305, 427, 774
BsmFI	GGGAC	2 cut(s)	18, 278
BsnI	GGCC	5 cut(s)	92, 163, 419, 644, 716
Bso31I	GGTCTC	1 cut(s)	305
BsoBI	CYCGRG	1 cut(s)	539
Bsp143I	GATC	1 cut(s)	654
BspACI	CCGC	2 cut(s)	281, 315
BspANI	GGCC	5 cut(s)	92, 163, 419, 644, 716
BspCNI	CTCAG	2 cut(s)	83, 143
BspLI	GGNNCC	1 cut(s)	705
BspMI	ACCTGC	1 cut(s)	744
BspTNI	GGTCTC	1 cut(s)	305
BsrI	ACTGG	2 cut(s)	296, 747
BssECI	CCNNGG	3 cut(s)	361, 722, 777
BssMI	GATC	1 cut(s)	654
BssT1I	CCWWGG	2 cut(s)	361, 777
Bst2UI	CCWGG	1 cut(s)	723
Bst4CI	ACNGT	3 cut(s)	115, 357, 487
Bst6I	CTCTTC	3 cut(s)	354, 633, 704
BstC8I	GCNNGC	2 cut(s)	23, 566
BstDEI	CTNAG	2 cut(s)	70, 130
BstEII	GGTNACC	1 cut(s)	219
BstF5I	GGATG	2 cut(s)	411, 540
BstKTI	GATC	1 cut(s)	657
BstMAI	GTCTC	3 cut(s)	305, 427, 774
BstMBI	GATC	1 cut(s)	654
BstMWI	GCNNNNNNNGC	5 cut(s)	18, 135, 570, 736, 782
BstNI	CCWGG	1 cut(s)	723
BstNSI	RCATGY	2 cut(s)	129, 379
BstPI	GGTNACC	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	721
BsuRI	GGCC	5 cut(s)	92, 163, 419, 644, 716
BtsCI	GGATG	2 cut(s)	411, 540
BtsIMutI	CAGTG	1 cut(s)	573
BveI	ACCTGC	1 cut(s)	744
Cac8I	GCNNGC	2 cut(s)	23, 566
Cfr13I	GGNCC	4 cut(s)	643, 703, 714, 733
CseI	GACGC	1 cut(s)	793
Csp6I	GTAC	1 cut(s)	236
CviAII	CATG	3 cut(s)	94, 126, 376
CviQI	GTAC	1 cut(s)	236
DdeI	CTNAG	2 cut(s)	70, 130
DpnI	GATC	1 cut(s)	656
DpnII	GATC	1 cut(s)	654
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	3 cut(s)	354, 633, 704
EarI	CTCTTC	3 cut(s)	354, 633, 704
Eco130I	CCWWGG	2 cut(s)	361, 777
Eco31I	GGTCTC	1 cut(s)	305
Eco47I	GGWCC	2 cut(s)	703, 733
Eco57I	CTGAAG	1 cut(s)	597
Eco88I	CYCGRG	1 cut(s)	539
Eco91I	GGTNACC	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	714
EcoO65I	GGTNACC	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	721
EcoT14I	CCWWGG	2 cut(s)	361, 777
ErhI	CCWWGG	2 cut(s)	361, 777
FaeI	CATG	3 cut(s)	97, 129, 379
FalI	AAGNNNNNCTT	2 cut(s)	701, 733
FaqI	GGGAC	2 cut(s)	18, 278
FatI	CATG	3 cut(s)	93, 125, 375
Fnu4HI	GCNGC	1 cut(s)	13
FokI	GGATG	2 cut(s)	418, 547
Fsp4HI	GCNGC	1 cut(s)	13
GluI	GCNGC	1 cut(s)	13
GsaI	CCCAGC	1 cut(s)	649
GsuI	CTGGAG	2 cut(s)	451, 542
HaeIII	GGCC	5 cut(s)	92, 163, 419, 644, 716
HapII	CCGG	1 cut(s)	731
HgaI	GACGC	1 cut(s)	793
Hin1II	CATG	3 cut(s)	97, 129, 379
HindIII	AAGCTT	1 cut(s)	783
HinfI	GANTC	2 cut(s)	448, 503
HpaII	CCGG	1 cut(s)	731
HphI	GGTGA	3 cut(s)	213, 220, 602
Hpy166II	GTNNAC	2 cut(s)	40, 301
Hpy188I	TCNGA	4 cut(s)	145, 159, 310, 325
Hpy188III	TCNNGA	6 cut(s)	132, 369, 403, 559, 658, 667
Hpy8I	GTNNAC	2 cut(s)	40, 301
HpyAV	CCTTC	3 cut(s)	71, 544, 605
HpyCH4III	ACNGT	3 cut(s)	115, 357, 487
HpyCH4V	TGCA	3 cut(s)	15, 248, 739
HpyF10VI	GCNNNNNNNGC	5 cut(s)	18, 135, 570, 736, 782
HpyF3I	CTNAG	2 cut(s)	70, 130
Hsp92II	CATG	3 cut(s)	97, 129, 379
Kzo9I	GATC	1 cut(s)	654
LweI	GCATC	3 cut(s)	185, 429, 525
MaeIII	GTNAC	2 cut(s)	219, 283
MalI	GATC	1 cut(s)	656
MboI	GATC	1 cut(s)	654
MboII	GAAGA	4 cut(s)	341, 590, 650, 721
MfeI	CAATTG	1 cut(s)	16
MlsI	TGGCCA	1 cut(s)	92
MluCI	AATT	2 cut(s)	16, 270
MluNI	TGGCCA	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	8 cut(s)	128, 153, 365, 430, 519, 535, 634, 705
Mox20I	TGGCCA	1 cut(s)	92
MscI	TGGCCA	1 cut(s)	92
MseI	TTAA	2 cut(s)	62, 482
Msp20I	TGGCCA	1 cut(s)	92
MspA1I	CMGCKG	2 cut(s)	649, 676
MspI	CCGG	1 cut(s)	731
MspR9I	CCNGG	1 cut(s)	723
MunI	CAATTG	1 cut(s)	16
MvaI	CCWGG	1 cut(s)	723
MwoI	GCNNNNNNNGC	5 cut(s)	18, 135, 570, 736, 782
NdeII	GATC	1 cut(s)	654
NlaIII	CATG	3 cut(s)	97, 129, 379
NlaIV	GGNNCC	1 cut(s)	705
NmuCI	GTSAC	1 cut(s)	219
NspI	RCATGY	2 cut(s)	129, 379
PaeR7I	CTCGAG	1 cut(s)	539
PfeI	GAWTC	2 cut(s)	448, 503
PkrI	GCNGC	1 cut(s)	14
Psp6I	CCWGG	1 cut(s)	721
PspEI	GGTNACC	1 cut(s)	219
PspFI	CCCAGC	1 cut(s)	645
PspGI	CCWGG	1 cut(s)	721
PspN4I	GGNNCC	1 cut(s)	705
PspPI	GGNCC	4 cut(s)	643, 703, 714, 733
PspXI	VCTCGAGB	1 cut(s)	539
PvuII	CAGCTG	2 cut(s)	649, 676
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
SaqAI	TTAA	2 cut(s)	62, 482
SatI	GCNGC	1 cut(s)	13
Sau3AI	GATC	1 cut(s)	654
Sau96I	GGNCC	4 cut(s)	643, 703, 714, 733
ScrFI	CCNGG	1 cut(s)	723
SfaNI	GCATC	3 cut(s)	185, 429, 525
Sfr274I	CTCGAG	1 cut(s)	539
SinI	GGWCC	2 cut(s)	703, 733
SlaI	CTCGAG	1 cut(s)	539
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	2 cut(s)	16, 270
SsiI	CCGC	2 cut(s)	281, 315
StyD4I	CCNGG	1 cut(s)	721
StyI	CCWWGG	2 cut(s)	361, 777
TaaI	ACNGT	3 cut(s)	115, 357, 487
TaqI	TCGA	3 cut(s)	511, 540, 609
TasI	AATT	2 cut(s)	16, 270
TatI	WGTACW	1 cut(s)	235
TfiI	GAWTC	2 cut(s)	448, 503
Tru1I	TTAA	2 cut(s)	62, 482
Tru9I	TTAA	2 cut(s)	62, 482
TscAI	CASTG	1 cut(s)	580
TseFI	GTSAC	1 cut(s)	219
TseI	GCWGC	1 cut(s)	12
Tsp45I	GTSAC	1 cut(s)	219
TspDTI	ATGAA	2 cut(s)	639, 743
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	1 cut(s)	580
VpaK11BI	GGWCC	2 cut(s)	703, 733
XceI	RCATGY	2 cut(s)	129, 379
XcmI	CCANNNNNNNNNTGG	1 cut(s)	566
XhoI	CTCGAG	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.