Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000433.1

Orthogroup ID

OG0003263

Physical Location & Seq

Genomic Coordinates Forward (+)

18071 .. 18627

Gene Structure 557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000433.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atgaagggagctgcgcttgtggcttttgctgctacaattggtaactttctgcaaggatgggacaatgctacaattgctggggctattgtttacatcacggacgattttgatttaggtagctcggtagaaggtcttgttgtggccatgtcactcatcggggcaacagttattacaacatgctcaagagccatatcagattggcttggtcggaggccaatgctaatagcatcatcagttctttattttgtgagtggcttggtgatgttgtggtcacccaatgtgtatgtactatgtcttgcaaggctattagatggatttggaattggtttagcggttactcttgtcccagtctacatataccgccccatcagatattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

125

Amino Acids

13.38

Weight (kDa)

6.01

Isoelectric Point (pI)

29.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003263)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10110
malus_domestica	MD02G1109100.v1.1 MD02G1109500.v1.1 MD15G1228300.v1.1
prunus_persica	Prupe.7G186000_v2.0.a1
pyrus_communis	pycom15g20340
rosa_chinensis	RchiOBHm_Chr1g0348791 RchiOBHm_Chr2g0096881 RchiOBHm_Chr2g0147991 RchiOBHm_Chr4g0410581 RchiOBHm_Chr7g0216381
rosa_laevigata	RLG00000016678
rosa_multiflora	Rmu_sc0000692.1_g000002 Rmu_sc0003743.1_g000031 Rmu_sc0007264.1_g000009 Rmu_sc0007806.1_g000019 Rmu_ssc0000215.1_g000006 Rmu_ssc0000433.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145190
rosa_rugosa	Rorug02G0061700
rosa_samantha	Rh1AG316900 Rh2AG109400 Rh2AG598500 Rh2BG111400 Rh2CG113500 Rh2DG112500 Rh4CG174300 Rh5BG370000 Rh5DG336900 Rh5DG401500 Rh5DG401600 Rh6DG244100 Rh7DG300200
rosa_wichuraiana	Rw1G028090 Rw2G008450 Rw7G025410 Rw7G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	351
AciI	CCGC	2 cut(s)	332, 361
AcoI	YGGCCR	1 cut(s)	141
AfaI	GTAC	1 cut(s)	288
AluBI	AGCT	2 cut(s)	11, 120
AluI	AGCT	2 cut(s)	11, 120
AoxI	GGCC	2 cut(s)	141, 212
ApeKI	GCWGC	2 cut(s)	11, 29
AspLEI	GCGC	1 cut(s)	16
AsuHPI	GGTGA	2 cut(s)	264, 271
BalI	TGGCCA	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	3 cut(s)	51, 305, 374
BisI	GCNGC	2 cut(s)	12, 30
BlsI	GCNGC	2 cut(s)	13, 31
BmrI	ACTGGG	1 cut(s)	341
BmsI	GCATC	1 cut(s)	236
BmuI	ACTGGG	1 cut(s)	341
BpuEI	CTTGAG	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	347
BseGI	GGATG	1 cut(s)	62
BseNI	ACTGG	1 cut(s)	347
BseXI	GCAGC	1 cut(s)	16
BseYI	CCCAGC	1 cut(s)	77
BshFI	GGCC	2 cut(s)	143, 214
BslFI	GGGAC	2 cut(s)	74, 329
BsmFI	GGGAC	2 cut(s)	74, 329
BsnI	GGCC	2 cut(s)	143, 214
BspACI	CCGC	2 cut(s)	332, 361
BspANI	GGCC	2 cut(s)	143, 214
BsrI	ACTGG	1 cut(s)	347
Bst4CI	ACNGT	1 cut(s)	166
BstEII	GGTNACC	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 29, 74
BstNSI	RCATGY	1 cut(s)	180
BstPI	GGTNACC	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	16
BsuRI	GGCC	2 cut(s)	143, 214
BtsCI	GGATG	1 cut(s)	62
CfoI	GCGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	287
CviAII	CATG	2 cut(s)	145, 177
CviQI	GTAC	1 cut(s)	287
EaeI	YGGCCR	1 cut(s)	141
Eco91I	GGTNACC	1 cut(s)	270
EcoO65I	GGTNACC	1 cut(s)	270
FaeI	CATG	2 cut(s)	148, 180
FaiI	YATR	7 cut(s)	146, 178, 191, 285, 292, 356, 358
FaqI	GGGAC	2 cut(s)	74, 329
FatI	CATG	2 cut(s)	144, 176
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	2 cut(s)	12, 30
FokI	GGATG	1 cut(s)	69
Fsp4HI	GCNGC	2 cut(s)	12, 30
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	2 cut(s)	12, 30
GsaI	CCCAGC	1 cut(s)	81
HaeIII	GGCC	2 cut(s)	143, 214
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	2 cut(s)	148, 180
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HphI	GGTGA	2 cut(s)	264, 271
Hpy166II	GTNNAC	2 cut(s)	91, 352
Hpy188I	TCNGA	3 cut(s)	196, 210, 371
Hpy188III	TCNNGA	1 cut(s)	183
Hpy8I	GTNNAC	2 cut(s)	91, 352
HpyAV	CCTTC	1 cut(s)	122
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	2 cut(s)	52, 299
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 29, 74
Hsp92II	CATG	2 cut(s)	148, 180
HspAI	GCGC	1 cut(s)	14
LmnI	GCTCC	1 cut(s)	8
LpnPI	CCDG	2 cut(s)	63, 360
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	1 cut(s)	236
MaeIII	GTNAC	4 cut(s)	41, 147, 270, 334
MfeI	CAATTG	2 cut(s)	36, 72
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	3 cut(s)	36, 72, 321
MluNI	TGGCCA	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	188
MnlI	CCTC	1 cut(s)	204
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
Msp20I	TGGCCA	1 cut(s)	143
MunI	CAATTG	2 cut(s)	36, 72
MwoI	GCNNNNNNNGC	3 cut(s)	20, 29, 74
NlaIII	CATG	2 cut(s)	148, 180
NmuCI	GTSAC	2 cut(s)	147, 270
NspI	RCATGY	1 cut(s)	180
PkrI	GCNGC	2 cut(s)	13, 31
PspEI	GGTNACC	1 cut(s)	270
PspFI	CCCAGC	1 cut(s)	77
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
SatI	GCNGC	2 cut(s)	12, 30
SetI	ASST	4 cut(s)	13, 118, 122, 133
SfaNI	GCATC	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
Sse9I	AATT	3 cut(s)	36, 72, 321
SsiI	CCGC	2 cut(s)	332, 361
TaaI	ACNGT	1 cut(s)	166
TasI	AATT	3 cut(s)	36, 72, 321
TatI	WGTACW	1 cut(s)	286
TseFI	GTSAC	2 cut(s)	147, 270
TseI	GCWGC	2 cut(s)	11, 29
Tsp45I	GTSAC	2 cut(s)	147, 270
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	113
XceI	RCATGY	1 cut(s)	180
XmiI	GTMKAC	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.