Rh5DG401500
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
63558944 .. 63559500
557 bp
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UTR
Exon/CDS
Intron
Rh5DG401500.1

Sequence Viewer

Length: 378 bp
ATGAAGGGAGCTGCGCTTATGGCTTTTGTTGCTACGATTGGTAACTTTCTGCAAGGATGGGACAATGCTACAATTGCTGGGGCTATTGTTTACATCATGGACGATTTTGATTTAGGTAGCTCGGTAGAAGGTCTTGTTGTGGCCATGTCACTCATCGGGGCAACAGTTATTACAACATGGTCAGGAGCCATATCAGATTGGCTTGGTCGGAGGCCAATGCTAATAGTATCATCAGTTCTTTATTTTGTGAGTGGCTTGGTGATGTTGTGGTCACCCAATGTGTATTTACTATGTCTTGCAAGGCTATTAGATGGATTTGGAATTGGTTTAGCGGTTACTCTTGTCCCAGTCTACATATACCGCCCCATCAGATATTAG

Protein Analysis

125

Amino Acids

13.5

Weight (kDa)

4.92

Isoelectric Point (pI)

26.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 7 - 119 2.3e-19 Sugar (and other) transporter
MFS_1 PF07690 12 - 119 1.5e-14 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 351
AciI CCGC 2 cut(s) 332, 361
AcoI YGGCCR 1 cut(s) 141
AluBI AGCT 2 cut(s) 11, 120
AluI AGCT 2 cut(s) 11, 120
AoxI GGCC 2 cut(s) 141, 212
ApeKI GCWGC 1 cut(s) 11
AspLEI GCGC 1 cut(s) 16
AsuHPI GGTGA 2 cut(s) 264, 271
BalI TGGCCA 1 cut(s) 143
BccI CCATC 3 cut(s) 51, 305, 374
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 187
BmrI ACTGGG 1 cut(s) 341
BmuI ACTGGG 1 cut(s) 341
Bse1I ACTGG 1 cut(s) 347
BseGI GGATG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 347
BseYI CCCAGC 1 cut(s) 77
BshFI GGCC 2 cut(s) 143, 214
BslFI GGGAC 2 cut(s) 74, 329
BsmFI GGGAC 2 cut(s) 74, 329
BsnI GGCC 2 cut(s) 143, 214
BspACI CCGC 2 cut(s) 332, 361
BspANI GGCC 2 cut(s) 143, 214
BspLI GGNNCC 1 cut(s) 187
BsrI ACTGG 1 cut(s) 347
Bst4CI ACNGT 1 cut(s) 166
BstEII GGTNACC 1 cut(s) 270
BstF5I GGATG 1 cut(s) 62
BstHHI GCGC 1 cut(s) 16
BstMWI GCNNNNNNNGC 3 cut(s) 20, 29, 74
BstPI GGTNACC 1 cut(s) 270
BsuRI GGCC 2 cut(s) 143, 214
BtsCI GGATG 1 cut(s) 62
CfoI GCGC 1 cut(s) 16
CviAII CATG 3 cut(s) 97, 145, 177
EaeI YGGCCR 1 cut(s) 141
Eco91I GGTNACC 1 cut(s) 270
EcoO65I GGTNACC 1 cut(s) 270
FaeI CATG 3 cut(s) 100, 148, 180
FaiI YATR 8 cut(s) 20, 98, 146, 178, 191, 292, 356, 358
FaqI GGGAC 2 cut(s) 74, 329
FatI CATG 3 cut(s) 96, 144, 176
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 12
GlaI GCGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 12
GsaI CCCAGC 1 cut(s) 81
HaeIII GGCC 2 cut(s) 143, 214
HhaI GCGC 1 cut(s) 16
Hin1II CATG 3 cut(s) 100, 148, 180
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HphI GGTGA 2 cut(s) 264, 271
Hpy166II GTNNAC 2 cut(s) 91, 352
Hpy188I TCNGA 3 cut(s) 196, 210, 371
Hpy188III TCNNGA 1 cut(s) 183
Hpy8I GTNNAC 2 cut(s) 91, 352
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 2 cut(s) 52, 299
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 29, 74
Hsp92II CATG 3 cut(s) 100, 148, 180
HspAI GCGC 1 cut(s) 14
LmnI GCTCC 2 cut(s) 8, 185
LpnPI CCDG 3 cut(s) 63, 168, 360
MaeIII GTNAC 4 cut(s) 41, 147, 270, 334
MfeI CAATTG 1 cut(s) 72
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 2 cut(s) 72, 321
MluNI TGGCCA 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 188
MnlI CCTC 1 cut(s) 204
Mox20I TGGCCA 1 cut(s) 143
MscI TGGCCA 1 cut(s) 143
Msp20I TGGCCA 1 cut(s) 143
MunI CAATTG 1 cut(s) 72
MwoI GCNNNNNNNGC 3 cut(s) 20, 29, 74
NlaIII CATG 3 cut(s) 100, 148, 180
NlaIV GGNNCC 1 cut(s) 187
NmuCI GTSAC 2 cut(s) 147, 270
PkrI GCNGC 1 cut(s) 13
PspEI GGTNACC 1 cut(s) 270
PspFI CCCAGC 1 cut(s) 77
PspN4I GGNNCC 1 cut(s) 187
PsrI GAACNNNNNNTAC 2 cut(s) 219, 251
SatI GCNGC 1 cut(s) 12
SetI ASST 4 cut(s) 13, 118, 122, 133
Sse9I AATT 2 cut(s) 72, 321
SsiI CCGC 2 cut(s) 332, 361
TaaI ACNGT 1 cut(s) 166
TasI AATT 2 cut(s) 72, 321
TseFI GTSAC 2 cut(s) 147, 270
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 2 cut(s) 147, 270
TspDTI ATGAA 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.