Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003263

Physical Location & Seq

Genomic Coordinates Reverse (-)

34395790 .. 34397498

Gene Structure 1709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG300200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTCACTCATCGGGGCAACAGTTATTACAACATGCTCAGGAGGCATATCAGATTGGCTTGGTTGGAGGCCAATGCTAATAGCATCATCAGTTCTTTATTTTGTGAGTGGCTTGGTGATGTTGTGGTCACCCAATGTGTATGTATTATGTCTTGCAAGGCTATTAGATGGATTTGGAATTGGTTTAGAGGTTACTCTTGTCCCAGTCTACATATCCGAGACCACCCCATCAGATATAAGGGGATCGTTGAATACTCTTCCACAGTTCCTTGGTTCAGGAGGCATGTTTTTGTCATATTGTATGGTTTTCGGGATGTCGCTGTTGGCCTCGCCAAGCTGGAGACTGATGCTTGGGATTCTTTCCATTCTCTCTCTTATATATTTTGTATTAACCGTGTTTTACTTACCTGAATCTCCTCGATGGCTTGTGAGTAAGGGCAGGATGCTCGAGGCAAAGAAGGTTCTCCAGAGCTTGCGTGGCACTGAAGATGTTTCTGTTTTCTGGGATAAATGGAGTTCTCTATTTCACTCCTCAAATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

180

Amino Acids

19.88

Weight (kDa)

7.69

Isoelectric Point (pI)

51.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	3 - 175	4.5e-41	Sugar (and other) transporter
MFS_1	PF07690	3 - 157	8.1e-16	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003263)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10110
malus_domestica	MD02G1109100.v1.1 MD02G1109500.v1.1 MD15G1228300.v1.1
prunus_persica	Prupe.7G186000_v2.0.a1
pyrus_communis	pycom15g20340
rosa_chinensis	RchiOBHm_Chr1g0348791 RchiOBHm_Chr2g0096881 RchiOBHm_Chr2g0147991 RchiOBHm_Chr4g0410581 RchiOBHm_Chr7g0216381
rosa_laevigata	RLG00000016678
rosa_multiflora	Rmu_sc0000692.1_g000002 Rmu_sc0003743.1_g000031 Rmu_sc0007264.1_g000009 Rmu_sc0007806.1_g000019 Rmu_ssc0000215.1_g000006 Rmu_ssc0000433.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145190
rosa_rugosa	Rorug02G0061700
rosa_samantha	Rh1AG316900 Rh2AG109400 Rh2AG598500 Rh2BG111400 Rh2CG113500 Rh2DG112500 Rh4CG174300 Rh5BG370000 Rh5DG336900 Rh5DG401500 Rh5DG401600 Rh6DG244100 Rh7DG300200
rosa_wichuraiana	Rw1G028090 Rw2G008450 Rw7G025410 Rw7G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	207
AclWI	GGATC	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	535
AcuI	CTGAAG	1 cut(s)	504
AgsI	TTSAA	1 cut(s)	250
AluBI	AGCT	2 cut(s)	336, 471
AluI	AGCT	2 cut(s)	336, 471
Alw26I	GTCTC	2 cut(s)	212, 334
AlwI	GGATC	1 cut(s)	250
Ama87I	CYCGRG	1 cut(s)	446
AoxI	GGCC	2 cut(s)	68, 324
ApoI	RAATTY	1 cut(s)	535
AsuHPI	GGTGA	2 cut(s)	120, 127
AvaI	CYCGRG	1 cut(s)	446
BccI	CCATC	3 cut(s)	161, 235, 414
BcgI	CGANNNNNNTGC	2 cut(s)	427, 461
BcoDI	GTCTC	2 cut(s)	212, 334
BmeT110I	CYCGRG	1 cut(s)	446
BmrI	ACTGGG	1 cut(s)	197
BmsI	GCATC	3 cut(s)	92, 336, 432
BmuI	ACTGGG	1 cut(s)	197
BpmI	CTGGAG	2 cut(s)	358, 449
Bpu10I	CCTNAGC	1 cut(s)	37
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	268
BseGI	GGATG	2 cut(s)	318, 447
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	203
BseRI	GAGGAG	2 cut(s)	405, 520
BshFI	GGCC	2 cut(s)	70, 326
BsiHKCI	CYCGRG	1 cut(s)	446
BslFI	GGGAC	1 cut(s)	185
BsmAI	GTCTC	2 cut(s)	212, 334
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	2 cut(s)	70, 326
Bso31I	GGTCTC	1 cut(s)	212
BsoBI	CYCGRG	1 cut(s)	446
Bsp143I	GATC	1 cut(s)	242
BspANI	GGCC	2 cut(s)	70, 326
BspCNI	CTCAG	1 cut(s)	50
BspPI	GGATC	1 cut(s)	250
BspTNI	GGTCTC	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	1 cut(s)	242
BssT1I	CCWWGG	1 cut(s)	268
Bst4CI	ACNGT	3 cut(s)	22, 264, 394
Bst6I	CTCTTC	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	473
BstDEI	CTNAG	1 cut(s)	37
BstEII	GGTNACC	1 cut(s)	126
BstF5I	GGATG	2 cut(s)	318, 447
BstKTI	GATC	1 cut(s)	245
BstMAI	GTCTC	2 cut(s)	212, 334
BstMBI	GATC	1 cut(s)	242
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 477
BstNSI	RCATGY	2 cut(s)	36, 286
BstPI	GGTNACC	1 cut(s)	126
BsuRI	GGCC	2 cut(s)	70, 326
BtsCI	GGATG	2 cut(s)	318, 447
BtsIMutI	CAGTG	1 cut(s)	480
Cac8I	GCNNGC	1 cut(s)	473
CviAII	CATG	2 cut(s)	33, 283
CviJI	RGCY	8 cut(s)	58, 70, 111, 160, 326, 336, 424, 471
CviKI_1	RGCY	8 cut(s)	58, 70, 111, 160, 326, 336, 424, 471
DdeI	CTNAG	1 cut(s)	37
DpnI	GATC	1 cut(s)	244
DpnII	GATC	1 cut(s)	242
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	268
Eco31I	GGTCTC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	504
Eco88I	CYCGRG	1 cut(s)	446
Eco91I	GGTNACC	1 cut(s)	126
EcoO65I	GGTNACC	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	268
FaeI	CATG	2 cut(s)	36, 286
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	2 cut(s)	32, 282
FblI	GTMKAC	1 cut(s)	207
FokI	GGATG	2 cut(s)	325, 454
GsuI	CTGGAG	2 cut(s)	358, 449
HaeIII	GGCC	2 cut(s)	70, 326
Hin1II	CATG	2 cut(s)	36, 286
HinfI	GANTC	2 cut(s)	355, 410
HphI	GGTGA	2 cut(s)	120, 127
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	3 cut(s)	52, 217, 232
Hpy188III	TCNNGA	5 cut(s)	39, 276, 310, 466, 540
Hpy8I	GTNNAC	1 cut(s)	208
HpyAV	CCTTC	1 cut(s)	451
HpyCH4III	ACNGT	3 cut(s)	22, 264, 394
HpyCH4V	TGCA	1 cut(s)	155
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 477
HpyF3I	CTNAG	1 cut(s)	37
Hsp92II	CATG	2 cut(s)	36, 286
Kzo9I	GATC	1 cut(s)	242
LpnPI	CCDG	8 cut(s)	24, 216, 261, 322, 420, 424, 479, 487
LweI	GCATC	3 cut(s)	92, 336, 432
MaeIII	GTNAC	3 cut(s)	3, 126, 190
MalI	GATC	1 cut(s)	244
MboI	GATC	1 cut(s)	242
MboII	GAAGA	2 cut(s)	248, 497
MluCI	AATT	2 cut(s)	177, 535
MmeI	TCCRAC	1 cut(s)	44
MnlI	CCTC	8 cut(s)	35, 60, 181, 272, 337, 426, 442, 541
MseI	TTAA	1 cut(s)	389
MwoI	GCNNNNNNNGC	2 cut(s)	42, 477
NdeII	GATC	1 cut(s)	242
NlaIII	CATG	2 cut(s)	36, 286
NmuCI	GTSAC	2 cut(s)	3, 126
NspI	RCATGY	2 cut(s)	36, 286
PaeR7I	CTCGAG	1 cut(s)	446
PfeI	GAWTC	2 cut(s)	355, 410
PspEI	GGTNACC	1 cut(s)	126
PspXI	VCTCGAGB	1 cut(s)	446
SaqAI	TTAA	1 cut(s)	389
Sau3AI	GATC	1 cut(s)	242
SetI	ASST	5 cut(s)	192, 338, 409, 462, 473
SfaNI	GCATC	3 cut(s)	92, 336, 432
Sfr274I	CTCGAG	1 cut(s)	446
SlaI	CTCGAG	1 cut(s)	446
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	2 cut(s)	177, 535
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	3 cut(s)	22, 264, 394
TaqI	TCGA	2 cut(s)	418, 447
TasI	AATT	2 cut(s)	177, 535
TfiI	GAWTC	2 cut(s)	355, 410
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TscAI	CASTG	1 cut(s)	487
TseFI	GTSAC	2 cut(s)	3, 126
Tsp45I	GTSAC	2 cut(s)	3, 126
TspRI	CASTG	1 cut(s)	487
XapI	RAATTY	1 cut(s)	535
XceI	RCATGY	2 cut(s)	36, 286
XcmI	CCANNNNNNNNNTGG	1 cut(s)	473
XhoI	CTCGAG	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.