Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003263

Physical Location & Seq

Genomic Coordinates Forward (+)

55605138 .. 55605496

Gene Structure 359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G028090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGAAGGGAGCTGCGCTTGTGGCTTTTGCTGCTACAATTGGTAACTTTCTGCAAGGATGGGACAATGCTACAATTGCTGGGGCTATTGTTTACATCACGGACGATTTTGATTTAGGTAGCTCGGTAGAAGGTCTTGTTGTGGCCATGTCACTCATCGGGGCAACATTTATTACAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

59

Amino Acids

6.01

Weight (kDa)

4.05

Isoelectric Point (pI)

18.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003263)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10110
malus_domestica	MD02G1109100.v1.1 MD02G1109500.v1.1 MD15G1228300.v1.1
prunus_persica	Prupe.7G186000_v2.0.a1
pyrus_communis	pycom15g20340
rosa_chinensis	RchiOBHm_Chr1g0348791 RchiOBHm_Chr2g0096881 RchiOBHm_Chr2g0147991 RchiOBHm_Chr4g0410581 RchiOBHm_Chr7g0216381
rosa_laevigata	RLG00000016678
rosa_multiflora	Rmu_sc0000692.1_g000002 Rmu_sc0003743.1_g000031 Rmu_sc0007264.1_g000009 Rmu_sc0007806.1_g000019 Rmu_ssc0000215.1_g000006 Rmu_ssc0000433.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145190
rosa_rugosa	Rorug02G0061700
rosa_samantha	Rh1AG316900 Rh2AG109400 Rh2AG598500 Rh2BG111400 Rh2CG113500 Rh2DG112500 Rh4CG174300 Rh5BG370000 Rh5DG336900 Rh5DG401500 Rh5DG401600 Rh6DG244100 Rh7DG300200
rosa_wichuraiana	Rw1G028090 Rw2G008450 Rw7G025410 Rw7G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	141
AluBI	AGCT	2 cut(s)	11, 120
AluI	AGCT	2 cut(s)	11, 120
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	2 cut(s)	11, 29
AspLEI	GCGC	1 cut(s)	16
BalI	TGGCCA	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	1 cut(s)	51
BisI	GCNGC	2 cut(s)	12, 30
BlsI	GCNGC	2 cut(s)	13, 31
BseGI	GGATG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	16
BseYI	CCCAGC	1 cut(s)	77
BshFI	GGCC	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	143
BspANI	GGCC	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 29, 74
BstV1I	GCAGC	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	62
CfoI	GCGC	1 cut(s)	16
CviAII	CATG	2 cut(s)	145, 177
CviJI	RGCY	5 cut(s)	11, 23, 83, 120, 143
CviKI_1	RGCY	5 cut(s)	11, 23, 83, 120, 143
EaeI	YGGCCR	1 cut(s)	141
FaeI	CATG	2 cut(s)	148, 180
FaiI	YATR	2 cut(s)	146, 178
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	2 cut(s)	144, 176
Fnu4HI	GCNGC	2 cut(s)	12, 30
FokI	GGATG	1 cut(s)	69
Fsp4HI	GCNGC	2 cut(s)	12, 30
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	2 cut(s)	12, 30
GsaI	CCCAGC	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	143
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	2 cut(s)	148, 180
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
Hpy166II	GTNNAC	1 cut(s)	91
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	122
HpyCH4V	TGCA	1 cut(s)	52
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 29, 74
Hsp92II	CATG	2 cut(s)	148, 180
HspAI	GCGC	1 cut(s)	14
LmnI	GCTCC	1 cut(s)	8
LpnPI	CCDG	1 cut(s)	63
Lsp1109I	GCAGC	1 cut(s)	16
MaeIII	GTNAC	2 cut(s)	41, 147
MfeI	CAATTG	2 cut(s)	36, 72
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	2 cut(s)	36, 72
MluNI	TGGCCA	1 cut(s)	143
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
Msp20I	TGGCCA	1 cut(s)	143
MunI	CAATTG	2 cut(s)	36, 72
MwoI	GCNNNNNNNGC	3 cut(s)	20, 29, 74
NlaIII	CATG	2 cut(s)	148, 180
NmuCI	GTSAC	1 cut(s)	147
PkrI	GCNGC	2 cut(s)	13, 31
PspFI	CCCAGC	1 cut(s)	77
SatI	GCNGC	2 cut(s)	12, 30
SetI	ASST	4 cut(s)	13, 118, 122, 133
SgeI	CNNG	8 cut(s)	29, 65, 90, 109, 133, 146, 157, 169
Sse9I	AATT	2 cut(s)	36, 72
TasI	AATT	2 cut(s)	36, 72
TseFI	GTSAC	1 cut(s)	147
TseI	GCWGC	2 cut(s)	11, 29
Tsp45I	GTSAC	1 cut(s)	147
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.