Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003263

Physical Location & Seq

Genomic Coordinates Reverse (-)

31743862 .. 31746390

Gene Structure 2529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G025410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGTCACTCATCGGGGCAACAGTTATTACAGCATGCTCAGGAGGCATATCAGATTGGCTTGGTTGGAGGCCAATGCTAATAGCATCATCAGTTCTTTATTTTGTGAGTGGCTTGGTGATGTTGTGGTCACCCAATGTGTACGTATTATGTCTTGCAAGGCTATTAGATGGATTTGGAATTGGTTTAGCGGTTACTCTTGTCCCAGTCTACATATCCGAGACCACCCCATCAGATATAAGGGGATCGTTGAATACTCTTCCACAGTTCCTTGGTTCAGGAGGCATGTTTTTGTCATATTGTATGGTTTTCGGGATGTCGCTGTTGGCCTCGCCAAGCTGGAGACTGATGCTTGGGATTCTTTCCATTCTCTCTCTTATATATTTTATATTAACCGTGTTTTACTTACCTGAATCTCCTCGATGGCTTGTGAGTAAGGGCAGGATGCTCGAGGCAAAGAAGGTTCTCCAGAGCTTGCGTGGCACTGAAGATGTTTCTGTTTTGCAGTTTTCTGGGATAAATGGAGTTCTCTATTTCACTCCTCAAATTCTTGAAGAGGCTGGAGTCTCAGTTCTTCTTGAAAGCTTTGGTCTCTGTACAACATCTGCATCTTTCCTCATCAGTGCATTCACAACTTTGTTGATGCTTCCTTGTATAGGTCTAGCCATGAAGCTCATGGATATCACTGGTAGAAGGATCCTGCTACTGACTACACTTCCTGTGTTGATTGTGTCACTCATTCTTCTAGTCATTGCCAACTTAGTGACCCTAAGTTCAGTCGTTGAAGCCGCAATATCAACCACTTGTGTGATAATCTTTTTCTGTGTCTTTGTCACGGCCTATGGGCCAATCCCAAATATCCTCTGCTCCGAGATCTTTCCTACAAGGGTGCGTGGCGTCTGCATTGCCATCTGTGCCCTGGCGTACTGGATTGCAGACATTATCGTGACCTACATGCTGCCAGTTCTGCTTGATTCAATAGGCCTAGCTGGTATCTTTGGGATTTATGCCGTTGTTTGTGTCATCTCTTTGGTGTTTATCTACTTGAAAGTTCCAGAAACCAAAGGCATGCCCCTTGAAGTCATTACTGAATTCTTTTCTGTTGGTGCAAGACAAATTGCTGCTGCCAAAAATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

378

Amino Acids

40.87

Weight (kDa)

5.65

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	3 - 165	1.7e-39	Sugar (and other) transporter
MFS_1	PF07690	3 - 314	1.9e-20	Major Facilitator Superfamily
Sugar_tr	PF00083	166 - 365	4.6e-32	Sugar (and other) transporter
MFS_1	PF07690	191 - 354	1.3e-07	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003263)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10110
malus_domestica	MD02G1109100.v1.1 MD02G1109500.v1.1 MD15G1228300.v1.1
prunus_persica	Prupe.7G186000_v2.0.a1
pyrus_communis	pycom15g20340
rosa_chinensis	RchiOBHm_Chr1g0348791 RchiOBHm_Chr2g0096881 RchiOBHm_Chr2g0147991 RchiOBHm_Chr4g0410581 RchiOBHm_Chr7g0216381
rosa_laevigata	RLG00000016678
rosa_multiflora	Rmu_sc0000692.1_g000002 Rmu_sc0003743.1_g000031 Rmu_sc0007264.1_g000009 Rmu_sc0007806.1_g000019 Rmu_ssc0000215.1_g000006 Rmu_ssc0000433.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145190
rosa_rugosa	Rorug02G0061700
rosa_samantha	Rh1AG316900 Rh2AG109400 Rh2AG598500 Rh2BG111400 Rh2CG113500 Rh2DG112500 Rh4CG174300 Rh5BG370000 Rh5DG336900 Rh5DG401500 Rh5DG401600 Rh6DG244100 Rh7DG300200
rosa_wichuraiana	Rw1G028090 Rw2G008450 Rw7G025410 Rw7G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	207
AciI	CCGC	2 cut(s)	188, 786
AclWI	GGATC	3 cut(s)	250, 688, 701
AcsI	RAATTY	2 cut(s)	543, 1088
AcuI	CTGAAG	1 cut(s)	504
AcyI	GRCGYC	1 cut(s)	894
AfaI	GTAC	3 cut(s)	140, 595, 923
AfiI	CCNNNNNNNGG	1 cut(s)	653
AgsI	TTSAA	7 cut(s)	250, 551, 578, 782, 975, 1045, 1076
AjnI	CCWGG	1 cut(s)	915
AleI	CACNNNNGTG	1 cut(s)	803
AloI	GAACNNNNNNTCC	2 cut(s)	552, 584
AluBI	AGCT	5 cut(s)	336, 471, 582, 670, 986
AluI	AGCT	5 cut(s)	336, 471, 582, 670, 986
Alw26I	GTCTC	4 cut(s)	212, 334, 568, 593
AlwI	GGATC	3 cut(s)	250, 688, 701
Ama87I	CYCGRG	1 cut(s)	446
AoxI	GGCC	5 cut(s)	68, 324, 834, 842, 979
ApeKI	GCWGC	3 cut(s)	955, 1118, 1121
ApoI	RAATTY	2 cut(s)	543, 1088
AspS9I	GGNCC	1 cut(s)	842
AsuHPI	GGTGA	2 cut(s)	120, 127
AvaI	CYCGRG	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	916
BamHI	GGATCC	1 cut(s)	693
BbvI	GCAGC	3 cut(s)	942, 1105, 1108
BccI	CCATC	4 cut(s)	161, 235, 414, 914
BceAI	ACGGC	2 cut(s)	849, 992
BcgI	CGANNNNNNTGC	2 cut(s)	427, 461
BciT130I	CCWGG	1 cut(s)	917
BcoDI	GTCTC	4 cut(s)	212, 334, 568, 593
BfaI	CTAG	3 cut(s)	659, 743, 983
BglII	AGATCT	1 cut(s)	870
BisI	GCNGC	4 cut(s)	786, 956, 1119, 1122
BlsI	GCNGC	4 cut(s)	787, 957, 1120, 1123
Bme1390I	CCNGG	1 cut(s)	917
BmeT110I	CYCGRG	1 cut(s)	446
BmgT120I	GGNCC	1 cut(s)	842
BmiI	GGNNCC	1 cut(s)	695
BmrFI	CCNGG	1 cut(s)	917
BmrI	ACTGGG	1 cut(s)	197
BmsI	GCATC	5 cut(s)	92, 336, 432, 614, 630
BmuI	ACTGGG	1 cut(s)	197
BpmI	CTGGAG	3 cut(s)	358, 449, 579
Bpu10I	CCTNAGC	1 cut(s)	37
BsaAI	YACGTR	1 cut(s)	142
BsaHI	GRCGYC	1 cut(s)	894
BsaI	GGTCTC	2 cut(s)	212, 593
BsaJI	CCNNGG	2 cut(s)	268, 915
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bsc4I	CCNNNNNNNGG	1 cut(s)	653
Bse1I	ACTGG	4 cut(s)	203, 688, 929, 959
Bse3DI	GCAATG	2 cut(s)	747, 900
BseBI	CCWGG	1 cut(s)	917
BseDI	CCNNGG	2 cut(s)	268, 915
BseGI	GGATG	2 cut(s)	318, 447
BseLI	CCNNNNNNNGG	1 cut(s)	653
BseMI	GCAATG	2 cut(s)	747, 900
BseMII	CTCAG	2 cut(s)	51, 579
BseNI	ACTGG	4 cut(s)	203, 688, 929, 959
BseRI	GAGGAG	2 cut(s)	405, 528
BseSI	GKGCMC	1 cut(s)	916
BseXI	GCAGC	3 cut(s)	942, 1105, 1108
BshFI	GGCC	5 cut(s)	70, 326, 836, 844, 981
BsiHKCI	CYCGRG	1 cut(s)	446
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	1 cut(s)	653
BsmAI	GTCTC	4 cut(s)	212, 334, 568, 593
BsmFI	GGGAC	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	623
BsnI	GGCC	5 cut(s)	70, 326, 836, 844, 981
Bso31I	GGTCTC	2 cut(s)	212, 593
BsoBI	CYCGRG	1 cut(s)	446
Bsp1286I	GDGCHC	1 cut(s)	916
Bsp1407I	TGTACA	1 cut(s)	593
Bsp143I	GATC	3 cut(s)	242, 693, 870
BspACI	CCGC	2 cut(s)	188, 786
BspANI	GGCC	5 cut(s)	70, 326, 836, 844, 981
BspCNI	CTCAG	2 cut(s)	50, 578
BspLI	GGNNCC	1 cut(s)	695
BspPI	GGATC	3 cut(s)	250, 688, 701
BspTNI	GGTCTC	2 cut(s)	212, 593
BsrDI	GCAATG	2 cut(s)	747, 900
BsrGI	TGTACA	1 cut(s)	593
BsrI	ACTGG	4 cut(s)	203, 688, 929, 959
BssECI	CCNNGG	2 cut(s)	268, 915
BssMI	GATC	3 cut(s)	242, 693, 870
BssNI	GRCGYC	1 cut(s)	894
BssT1I	CCWWGG	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	917
Bst4CI	ACNGT	3 cut(s)	22, 264, 394
Bst6I	CTCTTC	2 cut(s)	261, 546
BstACI	GRCGYC	1 cut(s)	894
BstAUI	TGTACA	1 cut(s)	593
BstBAI	YACGTR	1 cut(s)	142
BstC8I	GCNNGC	3 cut(s)	34, 473, 1067
BstDEI	CTNAG	4 cut(s)	37, 565, 757, 767
BstEII	GGTNACC	1 cut(s)	126
BstENI	CCTNNNNNAGG	1 cut(s)	651
BstF5I	GGATG	2 cut(s)	318, 447
BstKTI	GATC	3 cut(s)	245, 696, 873
BstMAI	GTCTC	4 cut(s)	212, 334, 568, 593
BstMBI	GATC	3 cut(s)	242, 693, 870
BstMWI	GCNNNNNNNGC	4 cut(s)	42, 477, 911, 964
BstNI	CCWGG	1 cut(s)	917
BstNSI	RCATGY	4 cut(s)	36, 286, 955, 1069
BstPI	GGTNACC	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	915
BstSLI	GKGCMC	1 cut(s)	916
BstSNI	TACGTA	1 cut(s)	142
BstV1I	GCAGC	3 cut(s)	942, 1105, 1108
BstX2I	RGATCY	2 cut(s)	693, 870
BstYI	RGATCY	2 cut(s)	693, 870
BsuRI	GGCC	5 cut(s)	70, 326, 836, 844, 981
BtsCI	GGATG	2 cut(s)	318, 447
BtsIMutI	CAGTG	3 cut(s)	480, 625, 681
Cac8I	GCNNGC	3 cut(s)	34, 473, 1067
Cfr13I	GGNCC	1 cut(s)	842
CseI	GACGC	1 cut(s)	883
Csp6I	GTAC	3 cut(s)	139, 594, 922
CviAII	CATG	6 cut(s)	33, 283, 664, 673, 952, 1066
CviQI	GTAC	3 cut(s)	139, 594, 922
DdeI	CTNAG	4 cut(s)	37, 565, 757, 767
DpnI	GATC	3 cut(s)	244, 695, 872
DpnII	GATC	3 cut(s)	242, 693, 870
Eam1104I	CTCTTC	2 cut(s)	261, 546
EarI	CTCTTC	2 cut(s)	261, 546
Eco105I	TACGTA	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	268
Eco147I	AGGCCT	1 cut(s)	981
Eco31I	GGTCTC	2 cut(s)	212, 593
Eco32I	GATATC	1 cut(s)	679
Eco57I	CTGAAG	1 cut(s)	504
Eco88I	CYCGRG	1 cut(s)	446
Eco91I	GGTNACC	1 cut(s)	126
EcoNI	CCTNNNNNAGG	1 cut(s)	651
EcoO65I	GGTNACC	1 cut(s)	126
EcoRI	GAATTC	1 cut(s)	1088
EcoRII	CCWGG	1 cut(s)	915
EcoRV	GATATC	1 cut(s)	679
EcoT14I	CCWWGG	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	268
FaeI	CATG	6 cut(s)	36, 286, 667, 676, 955, 1069
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	6 cut(s)	32, 282, 663, 672, 951, 1065
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	4 cut(s)	786, 956, 1119, 1122
FokI	GGATG	2 cut(s)	325, 454
Fsp4HI	GCNGC	4 cut(s)	786, 956, 1119, 1122
FspBI	CTAG	3 cut(s)	659, 743, 983
GluI	GCNGC	4 cut(s)	786, 956, 1119, 1122
GsuI	CTGGAG	3 cut(s)	358, 449, 579
HaeIII	GGCC	5 cut(s)	70, 326, 836, 844, 981
HgaI	GACGC	1 cut(s)	883
Hin1I	GRCGYC	1 cut(s)	894
Hin1II	CATG	6 cut(s)	36, 286, 667, 676, 955, 1069
HindIII	AAGCTT	1 cut(s)	580
HinfI	GANTC	4 cut(s)	355, 410, 561, 971
HphI	GGTGA	2 cut(s)	120, 127
Hpy166II	GTNNAC	2 cut(s)	139, 208
Hpy188I	TCNGA	4 cut(s)	52, 217, 232, 868
Hpy188III	TCNNGA	8 cut(s)	39, 276, 310, 466, 548, 575, 943, 1052
Hpy8I	GTNNAC	2 cut(s)	139, 208
HpyAV	CCTTC	2 cut(s)	451, 684
HpyCH4III	ACNGT	3 cut(s)	22, 264, 394
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	7 cut(s)	155, 502, 605, 623, 900, 932, 1106
HpyF10VI	GCNNNNNNNGC	4 cut(s)	42, 477, 911, 964
HpyF3I	CTNAG	4 cut(s)	37, 565, 757, 767
HpySE526I	ACGT	1 cut(s)	141
Hsp92I	GRCGYC	1 cut(s)	894
Hsp92II	CATG	6 cut(s)	36, 286, 667, 676, 955, 1069
Kzo9I	GATC	3 cut(s)	242, 693, 870
LmnI	GCTCC	1 cut(s)	869
Lsp1109I	GCAGC	3 cut(s)	942, 1105, 1108
LweI	GCATC	5 cut(s)	92, 336, 432, 614, 630
MaeI	CTAG	3 cut(s)	659, 743, 983
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	7 cut(s)	3, 126, 190, 729, 760, 829, 943
MalI	GATC	3 cut(s)	244, 695, 872
MboI	GATC	3 cut(s)	242, 693, 870
MboII	GAAGA	5 cut(s)	248, 497, 563, 563, 731
MflI	RGATCY	2 cut(s)	693, 870
MhlI	GDGCHC	1 cut(s)	916
MluCI	AATT	4 cut(s)	177, 543, 1088, 1113
MlyI	GAGTC	1 cut(s)	570
MmeI	TCCRAC	1 cut(s)	44
MseI	TTAA	1 cut(s)	389
MslI	CAYNNNNRTG	2 cut(s)	803, 941
MspR9I	CCNGG	1 cut(s)	917
Mva1269I	GAATGC	1 cut(s)	623
MvaI	CCWGG	1 cut(s)	917
MwoI	GCNNNNNNNGC	4 cut(s)	42, 477, 911, 964
NdeII	GATC	3 cut(s)	242, 693, 870
NlaIII	CATG	6 cut(s)	36, 286, 667, 676, 955, 1069
NlaIV	GGNNCC	1 cut(s)	695
NmuCI	GTSAC	6 cut(s)	3, 126, 729, 760, 829, 943
NspI	RCATGY	4 cut(s)	36, 286, 955, 1069
OliI	CACNNNNGTG	1 cut(s)	803
PaeI	GCATGC	2 cut(s)	36, 1069
PaeR7I	CTCGAG	1 cut(s)	446
PceI	AGGCCT	1 cut(s)	981
PctI	GAATGC	1 cut(s)	623
PfeI	GAWTC	3 cut(s)	355, 410, 971
PkrI	GCNGC	4 cut(s)	787, 957, 1120, 1123
PleI	GAGTC	1 cut(s)	569
PpsI	GAGTC	1 cut(s)	569
Ppu21I	YACGTR	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	915
PspEI	GGTNACC	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	915
PspN4I	GGNNCC	1 cut(s)	695
PspPI	GGNCC	1 cut(s)	842
PspXI	VCTCGAGB	1 cut(s)	446
PsuI	RGATCY	2 cut(s)	693, 870
RsaI	GTAC	3 cut(s)	140, 595, 923
RsaNI	GTAC	3 cut(s)	139, 594, 922
RseI	CAYNNNNRTG	2 cut(s)	803, 941
SaqAI	TTAA	1 cut(s)	389
SatI	GCNGC	4 cut(s)	786, 956, 1119, 1122
Sau3AI	GATC	3 cut(s)	242, 693, 870
Sau96I	GGNCC	1 cut(s)	842
SchI	GAGTC	1 cut(s)	570
ScrFI	CCNGG	1 cut(s)	917
SduI	GDGCHC	1 cut(s)	916
SfaNI	GCATC	5 cut(s)	92, 336, 432, 614, 630
Sfr274I	CTCGAG	1 cut(s)	446
SlaI	CTCGAG	1 cut(s)	446
SmiMI	CAYNNNNRTG	2 cut(s)	803, 941
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
SnaBI	TACGTA	1 cut(s)	142
SphI	GCATGC	2 cut(s)	36, 1069
Sse9I	AATT	4 cut(s)	177, 543, 1088, 1113
SseBI	AGGCCT	1 cut(s)	981
SsiI	CCGC	2 cut(s)	188, 786
SspMI	CTAG	3 cut(s)	659, 743, 983
StuI	AGGCCT	1 cut(s)	981
StyD4I	CCNGG	1 cut(s)	915
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	3 cut(s)	22, 264, 394
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	2 cut(s)	418, 447
TasI	AATT	4 cut(s)	177, 543, 1088, 1113
TatI	WGTACW	1 cut(s)	593
TauI	GCSGC	1 cut(s)	788
TfiI	GAWTC	3 cut(s)	355, 410, 971
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TscAI	CASTG	3 cut(s)	487, 625, 688
TseFI	GTSAC	6 cut(s)	3, 126, 729, 760, 829, 943
TseI	GCWGC	3 cut(s)	955, 1118, 1121
Tsp45I	GTSAC	6 cut(s)	3, 126, 729, 760, 829, 943
TspDTI	ATGAA	1 cut(s)	680
TspRI	CASTG	3 cut(s)	487, 625, 688
XagI	CCTNNNNNAGG	1 cut(s)	651
XapI	RAATTY	2 cut(s)	543, 1088
XceI	RCATGY	4 cut(s)	36, 286, 955, 1069
XcmI	CCANNNNNNNNNTGG	3 cut(s)	473, 670, 913
XhoI	CTCGAG	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	207
XspI	CTAG	3 cut(s)	659, 743, 983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.