Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003263

Physical Location & Seq

Genomic Coordinates Forward (+)

63559574 .. 63566952

Gene Structure 7379 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG401600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGTCACTGTTGGCCTCGCCAAGCTGGAGACTGATGCTTGGGATTCTTTCCATTCTCTCTCTTATATATTTTGTATTAACCGTGTTTTACTTACCTGAATCTCCTCGATGGCTTGTGAGTAAGGGCAGGATGCTCGAGGCAAGGAAGGTTCTCCAGAGCTTGCGTGGCACTGAAGATGTTTCTGAAGCATGTGGAGTTCTTTCAATGGAGAAAAGGCTAGAAGGGCCTCAAAATACTAGTTTAGCTGGCCGTCTTATTGTAGGCTTTGAATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

91

Amino Acids

10.22

Weight (kDa)

8.98

Isoelectric Point (pI)

67.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	8 - 63	2.7e-13	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003263)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10110
malus_domestica	MD02G1109100.v1.1 MD02G1109500.v1.1 MD15G1228300.v1.1
prunus_persica	Prupe.7G186000_v2.0.a1
pyrus_communis	pycom15g20340
rosa_chinensis	RchiOBHm_Chr1g0348791 RchiOBHm_Chr2g0096881 RchiOBHm_Chr2g0147991 RchiOBHm_Chr4g0410581 RchiOBHm_Chr7g0216381
rosa_laevigata	RLG00000016678
rosa_multiflora	Rmu_sc0000692.1_g000002 Rmu_sc0003743.1_g000031 Rmu_sc0007264.1_g000009 Rmu_sc0007806.1_g000019 Rmu_ssc0000215.1_g000006 Rmu_ssc0000433.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145190
rosa_rugosa	Rorug02G0061700
rosa_samantha	Rh1AG316900 Rh2AG109400 Rh2AG598500 Rh2BG111400 Rh2CG113500 Rh2DG112500 Rh4CG174300 Rh5BG370000 Rh5DG336900 Rh5DG401500 Rh5DG401600 Rh6DG244100 Rh7DG300200
rosa_wichuraiana	Rw1G028090 Rw2G008450 Rw7G025410 Rw7G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	247
AcuI	CTGAAG	2 cut(s)	192, 204
AgsI	TTSAA	2 cut(s)	204, 269
AhlI	ACTAGT	1 cut(s)	236
AluBI	AGCT	3 cut(s)	24, 159, 245
AluI	AGCT	3 cut(s)	24, 159, 245
Alw26I	GTCTC	1 cut(s)	22
Ama87I	CYCGRG	1 cut(s)	134
AoxI	GGCC	3 cut(s)	12, 224, 247
AspS9I	GGNCC	1 cut(s)	224
AvaI	CYCGRG	1 cut(s)	134
BccI	CCATC	1 cut(s)	102
BceAI	ACGGC	1 cut(s)	234
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BcoDI	GTCTC	1 cut(s)	22
BcuI	ACTAGT	1 cut(s)	236
BfaI	CTAG	2 cut(s)	218, 237
BmeT110I	CYCGRG	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	224
BmsI	GCATC	2 cut(s)	24, 120
BpmI	CTGGAG	2 cut(s)	46, 137
BseGI	GGATG	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	93
BshFI	GGCC	3 cut(s)	14, 226, 249
BsiHKCI	CYCGRG	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	22
BsnI	GGCC	3 cut(s)	14, 226, 249
BsoBI	CYCGRG	1 cut(s)	134
BspANI	GGCC	3 cut(s)	14, 226, 249
Bst4CI	ACNGT	2 cut(s)	9, 82
BstC8I	GCNNGC	2 cut(s)	161, 247
BstF5I	GGATG	1 cut(s)	135
BstMAI	GTCTC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	2 cut(s)	165, 223
BstNSI	RCATGY	1 cut(s)	192
BsuRI	GGCC	3 cut(s)	14, 226, 249
BtsCI	GGATG	1 cut(s)	135
BtsIMutI	CAGTG	2 cut(s)	5, 168
Cac8I	GCNNGC	2 cut(s)	161, 247
Cfr13I	GGNCC	1 cut(s)	224
CviAII	CATG	1 cut(s)	189
CviJI	RGCY	9 cut(s)	14, 24, 112, 159, 217, 226, 245, 249, 264
CviKI_1	RGCY	9 cut(s)	14, 24, 112, 159, 217, 226, 245, 249, 264
EaeI	YGGCCR	1 cut(s)	247
Eco57I	CTGAAG	2 cut(s)	192, 204
Eco88I	CYCGRG	1 cut(s)	134
EcoO109I	RGGNCCY	1 cut(s)	224
FaeI	CATG	1 cut(s)	192
FaiI	YATR	3 cut(s)	65, 67, 190
FatI	CATG	1 cut(s)	188
FokI	GGATG	1 cut(s)	142
FspBI	CTAG	2 cut(s)	218, 237
GsuI	CTGGAG	2 cut(s)	46, 137
HaeIII	GGCC	3 cut(s)	14, 226, 249
Hin1II	CATG	1 cut(s)	192
HinfI	GANTC	2 cut(s)	43, 98
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	1 cut(s)	154
HpyAV	CCTTC	2 cut(s)	139, 215
HpyCH4III	ACNGT	2 cut(s)	9, 82
HpyF10VI	GCNNNNNNNGC	2 cut(s)	165, 223
Hsp92II	CATG	1 cut(s)	192
LpnPI	CCDG	5 cut(s)	10, 108, 112, 167, 231
LweI	GCATC	2 cut(s)	24, 120
MaeI	CTAG	2 cut(s)	218, 237
MaeIII	GTNAC	1 cut(s)	3
MboII	GAAGA	1 cut(s)	185
MnlI	CCTC	4 cut(s)	25, 114, 130, 237
MseI	TTAA	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	165, 223
NlaIII	CATG	1 cut(s)	192
NmuCI	GTSAC	1 cut(s)	3
NspI	RCATGY	1 cut(s)	192
PaeR7I	CTCGAG	1 cut(s)	134
PfeI	GAWTC	2 cut(s)	43, 98
PspPI	GGNCC	1 cut(s)	224
PspXI	VCTCGAGB	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	77
Sau96I	GGNCC	1 cut(s)	224
SetI	ASST	5 cut(s)	26, 97, 150, 161, 247
SfaNI	GCATC	2 cut(s)	24, 120
Sfr274I	CTCGAG	1 cut(s)	134
SlaI	CTCGAG	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SpeI	ACTAGT	1 cut(s)	236
SspI	AATATT	1 cut(s)	272
SspMI	CTAG	2 cut(s)	218, 237
TaaI	ACNGT	2 cut(s)	9, 82
TaqI	TCGA	2 cut(s)	106, 135
TfiI	GAWTC	2 cut(s)	43, 98
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TscAI	CASTG	2 cut(s)	12, 175
TseFI	GTSAC	1 cut(s)	3
Tsp45I	GTSAC	1 cut(s)	3
TspRI	CASTG	2 cut(s)	12, 175
XceI	RCATGY	1 cut(s)	192
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161
XhoI	CTCGAG	1 cut(s)	134
XspI	CTAG	2 cut(s)	218, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.