Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003743.1

Orthogroup ID

OG0003263

Physical Location & Seq

Genomic Coordinates Forward (+)

140159 .. 145599

Gene Structure 5441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003743.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atggaagccgaagctcaagaatcgagcccccaaaacgagcttgagtgtgctctggatcttaatctgctagattatattactaaatttcttaaacttgacgctttgtgggtgctcaatgctcactcgcatttaggaagctctgaattgtgcctagcctcacctggaagaggtttgattgagattggggggttacattcattcattggtgaaaacatgaagggagctgcgcttgtggcttttgctgctacaattggtaactttatgcaaggatgggacaatgctacaattgctggggctattgtttacatcatggacgattttgatttaggtagctcggtaaaaggtcttgttgtggctatgtcactcatcggggcaacagttattacaacatgctcaggagccatatcagattggcttggtcggaggccaatgctaatagcatcatcagttctttattttgtgagtggcttggtgatgttgtggtcacccaatgtgtatgtactatgtcttgcaaggctattagatggatttggaattggtttagcggttactcttgtcccagtctacatatccgagaccgccccatcagatattaggggatcattgaatactcttccacaccttcaaaccgcagataccaccgtcgcccaacttgaagttctcaacctcaggagcccaaaaccagcggcgccacccccagaaccggccgaaatcaacctaaaccggccaccggaagtgactgaaccggcccccaagaagaatccgtcgatcttctgcctgattttgcatccttcccatccaccgatcactgccaccttttgtcagaagctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

277

Amino Acids

29.54

Weight (kDa)

4.96

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003263)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10110
malus_domestica	MD02G1109100.v1.1 MD02G1109500.v1.1 MD15G1228300.v1.1
prunus_persica	Prupe.7G186000_v2.0.a1
pyrus_communis	pycom15g20340
rosa_chinensis	RchiOBHm_Chr1g0348791 RchiOBHm_Chr2g0096881 RchiOBHm_Chr2g0147991 RchiOBHm_Chr4g0410581 RchiOBHm_Chr7g0216381
rosa_laevigata	RLG00000016678
rosa_multiflora	Rmu_sc0000692.1_g000002 Rmu_sc0003743.1_g000031 Rmu_sc0007264.1_g000009 Rmu_sc0007806.1_g000019 Rmu_ssc0000215.1_g000006 Rmu_ssc0000433.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145190
rosa_rugosa	Rorug02G0061700
rosa_samantha	Rh1AG316900 Rh2AG109400 Rh2AG598500 Rh2BG111400 Rh2CG113500 Rh2DG112500 Rh4CG174300 Rh5BG370000 Rh5DG336900 Rh5DG401500 Rh5DG401600 Rh6DG244100 Rh7DG300200
rosa_wichuraiana	Rw1G028090 Rw2G008450 Rw7G025410 Rw7G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	688
AccI	GTMKAC	1 cut(s)	564
AciI	CCGC	4 cut(s)	545, 579, 630, 686
AclWI	GGATC	2 cut(s)	63, 607
AcoI	YGGCCR	2 cut(s)	705, 725
AcsI	RAATTY	1 cut(s)	83
AcyI	GRCGYC	1 cut(s)	689
AfaI	GTAC	1 cut(s)	501
AfiI	CCNNNNNNNGG	3 cut(s)	167, 703, 730
AgsI	TTSAA	3 cut(s)	607, 626, 656
AjnI	CCWGG	1 cut(s)	160
AjuI	GAANNNNNNNTTGG	2 cut(s)	642, 674
AluBI	AGCT	6 cut(s)	14, 40, 138, 224, 333, 829
AluI	AGCT	6 cut(s)	14, 40, 138, 224, 333, 829
Alw21I	GWGCWC	2 cut(s)	52, 114
Alw26I	GTCTC	1 cut(s)	569
AlwI	GGATC	2 cut(s)	63, 607
AlwNI	CAGNNNCTG	1 cut(s)	829
AoxI	GGCC	4 cut(s)	425, 705, 725, 747
ApeKI	GCWGC	2 cut(s)	224, 242
ApoI	RAATTY	1 cut(s)	83
AspLEI	GCGC	2 cut(s)	229, 691
AspS9I	GGNCC	1 cut(s)	748
AsuHPI	GGTGA	4 cut(s)	150, 218, 477, 484
AxyI	CCTNAGG	1 cut(s)	668
BaeI	ACNNNNGTAYC	2 cut(s)	627, 660
BanI	GGYRCC	1 cut(s)	688
BanII	GRGCYC	2 cut(s)	29, 677
Bbv12I	GWGCWC	2 cut(s)	52, 114
BbvI	GCAGC	2 cut(s)	211, 229
BccI	CCATC	4 cut(s)	264, 518, 592, 804
BciT130I	CCWGG	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	569
BfaI	CTAG	2 cut(s)	68, 152
BfmI	CTRYAG	1 cut(s)	830
BfoI	RGCGCY	1 cut(s)	692
BisI	GCNGC	3 cut(s)	225, 243, 687
BlsI	GCNGC	3 cut(s)	226, 244, 688
Bme1390I	CCNGG	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	748
BmiI	GGNNCC	4 cut(s)	400, 674, 690, 750
BmrFI	CCNGG	1 cut(s)	162
BmrI	ACTGGG	1 cut(s)	554
BmsI	GCATC	2 cut(s)	449, 796
BmuI	ACTGGG	1 cut(s)	554
Bpu10I	CCTNAGC	1 cut(s)	394
BpuEI	CTTGAG	1 cut(s)	62
BsaBI	GATNNNNATC	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	689
BsaI	GGTCTC	1 cut(s)	569
BsaWI	WCCGGW	1 cut(s)	730
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 703, 730
Bse118I	RCCGGY	3 cut(s)	703, 723, 745
Bse1I	ACTGG	1 cut(s)	560
Bse21I	CCTNAGG	1 cut(s)	668
Bse8I	GATNNNNATC	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	162
BseGI	GGATG	3 cut(s)	275, 787, 796
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	3 cut(s)	167, 703, 730
BseMII	CTCAG	2 cut(s)	408, 682
BseNI	ACTGG	1 cut(s)	560
BseX3I	CGGCCG	1 cut(s)	705
BseXI	GCAGC	2 cut(s)	211, 229
BseYI	CCCAGC	1 cut(s)	290
Bsh1285I	CGRYCG	1 cut(s)	708
BshFI	GGCC	4 cut(s)	427, 707, 727, 749
BshNI	GGYRCC	1 cut(s)	688
BsiEI	CGRYCG	1 cut(s)	708
BsiHKAI	GWGCWC	2 cut(s)	52, 114
BsiSI	CCGG	4 cut(s)	704, 724, 731, 746
BslFI	GGGAC	2 cut(s)	287, 542
BslI	CCNNNNNNNGG	3 cut(s)	167, 703, 730
BsmAI	GTCTC	1 cut(s)	569
BsmFI	GGGAC	2 cut(s)	287, 542
BsnI	GGCC	4 cut(s)	427, 707, 727, 749
Bso31I	GGTCTC	1 cut(s)	569
Bsp1286I	GDGCHC	4 cut(s)	29, 52, 114, 677
Bsp143I	GATC	4 cut(s)	55, 599, 768, 804
BspACI	CCGC	4 cut(s)	545, 579, 630, 686
BspANI	GGCC	4 cut(s)	427, 707, 727, 749
BspCNI	CTCAG	2 cut(s)	407, 681
BspLI	GGNNCC	4 cut(s)	400, 674, 690, 750
BspPI	GGATC	2 cut(s)	63, 607
BspT107I	GGYRCC	1 cut(s)	688
BspTNI	GGTCTC	1 cut(s)	569
BsrFI	RCCGGY	3 cut(s)	703, 723, 745
BsrI	ACTGG	1 cut(s)	560
BssAI	RCCGGY	3 cut(s)	703, 723, 745
BssMI	GATC	4 cut(s)	55, 599, 768, 804
BssNI	GRCGYC	1 cut(s)	689
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	2 cut(s)	379, 643
Bst6I	CTCTTC	2 cut(s)	160, 618
BstACI	GRCGYC	1 cut(s)	689
BstDEI	CTNAG	2 cut(s)	394, 668
BstEII	GGTNACC	1 cut(s)	483
BstENI	CCTNNNNNAGG	1 cut(s)	165
BstF5I	GGATG	3 cut(s)	275, 787, 796
BstH2I	RGCGCY	1 cut(s)	692
BstHHI	GCGC	2 cut(s)	229, 691
BstKTI	GATC	4 cut(s)	58, 602, 771, 807
BstMAI	GTCTC	1 cut(s)	569
BstMBI	GATC	4 cut(s)	55, 599, 768, 804
BstMCI	CGRYCG	1 cut(s)	708
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 242, 287
BstNI	CCWGG	1 cut(s)	162
BstNSI	RCATGY	1 cut(s)	393
BstPI	GGTNACC	1 cut(s)	483
BstSCI	CCNGG	1 cut(s)	160
BstSFI	CTRYAG	1 cut(s)	830
BstV1I	GCAGC	2 cut(s)	211, 229
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BstZI	CGGCCG	1 cut(s)	705
Bsu36I	CCTNAGG	1 cut(s)	668
BsuRI	GGCC	4 cut(s)	427, 707, 727, 749
BtsCI	GGATG	3 cut(s)	275, 787, 796
BtsI	GCAGTG	1 cut(s)	807
BtsIMutI	CAGTG	1 cut(s)	807
CaiI	CAGNNNCTG	1 cut(s)	829
CfoI	GCGC	2 cut(s)	229, 691
Cfr10I	RCCGGY	3 cut(s)	703, 723, 745
Cfr13I	GGNCC	1 cut(s)	748
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	500
CviAII	CATG	3 cut(s)	214, 310, 390
CviQI	GTAC	1 cut(s)	500
DdeI	CTNAG	2 cut(s)	394, 668
DinI	GGCGCC	1 cut(s)	690
DpnI	GATC	4 cut(s)	57, 601, 770, 806
DpnII	GATC	4 cut(s)	55, 599, 768, 804
EaeI	YGGCCR	2 cut(s)	705, 725
EagI	CGGCCG	1 cut(s)	705
Eam1104I	CTCTTC	2 cut(s)	160, 618
EarI	CTCTTC	2 cut(s)	160, 618
EclXI	CGGCCG	1 cut(s)	705
Eco24I	GRGCYC	2 cut(s)	29, 677
Eco31I	GGTCTC	1 cut(s)	569
Eco52I	CGGCCG	1 cut(s)	705
Eco81I	CCTNAGG	1 cut(s)	668
Eco91I	GGTNACC	1 cut(s)	483
EcoNI	CCTNNNNNAGG	1 cut(s)	165
EcoO65I	GGTNACC	1 cut(s)	483
EcoRII	CCWGG	1 cut(s)	160
EcoT38I	GRGCYC	2 cut(s)	29, 677
EgeI	GGCGCC	1 cut(s)	690
EheI	GGCGCC	1 cut(s)	690
FaeI	CATG	3 cut(s)	217, 313, 393
FaqI	GGGAC	2 cut(s)	287, 542
FatI	CATG	3 cut(s)	213, 309, 389
FblI	GTMKAC	1 cut(s)	564
Fnu4HI	GCNGC	3 cut(s)	225, 243, 687
FokI	GGATG	3 cut(s)	282, 774, 783
FriOI	GRGCYC	2 cut(s)	29, 677
Fsp4HI	GCNGC	3 cut(s)	225, 243, 687
FspBI	CTAG	2 cut(s)	68, 152
GlaI	GCGC	2 cut(s)	228, 690
GluI	GCNGC	3 cut(s)	225, 243, 687
GsaI	CCCAGC	1 cut(s)	294
HaeII	RGCGCY	1 cut(s)	692
HaeIII	GGCC	4 cut(s)	427, 707, 727, 749
HapII	CCGG	4 cut(s)	704, 724, 731, 746
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	2 cut(s)	229, 691
Hin1I	GRCGYC	1 cut(s)	689
Hin1II	CATG	3 cut(s)	217, 313, 393
Hin6I	GCGC	2 cut(s)	227, 689
HinP1I	GCGC	2 cut(s)	227, 689
HinfI	GANTC	2 cut(s)	20, 760
HpaII	CCGG	4 cut(s)	704, 724, 731, 746
HphI	GGTGA	4 cut(s)	150, 218, 477, 484
Hpy166II	GTNNAC	2 cut(s)	304, 565
Hpy188I	TCNGA	6 cut(s)	142, 409, 423, 574, 589, 825
Hpy188III	TCNNGA	4 cut(s)	17, 53, 396, 670
Hpy8I	GTNNAC	2 cut(s)	304, 565
Hpy99I	CGWCG	2 cut(s)	647, 769
HpyAV	CCTTC	3 cut(s)	211, 632, 801
HpyCH4III	ACNGT	2 cut(s)	379, 643
HpyCH4V	TGCA	3 cut(s)	265, 512, 787
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 242, 287
HpyF3I	CTNAG	2 cut(s)	394, 668
Hsp92I	GRCGYC	1 cut(s)	689
Hsp92II	CATG	3 cut(s)	217, 313, 393
HspAI	GCGC	2 cut(s)	227, 689
KasI	GGCGCC	1 cut(s)	688
Kzo9I	GATC	4 cut(s)	55, 599, 768, 804
LmnI	GCTCC	3 cut(s)	221, 398, 672
Lsp1109I	GCAGC	2 cut(s)	211, 229
LweI	GCATC	2 cut(s)	449, 796
MaeI	CTAG	2 cut(s)	68, 152
MaeIII	GTNAC	6 cut(s)	189, 254, 360, 483, 547, 736
MalI	GATC	4 cut(s)	57, 601, 770, 806
MboI	GATC	4 cut(s)	55, 599, 768, 804
MboII	GAAGA	4 cut(s)	177, 605, 763, 769
MfeI	CAATTG	2 cut(s)	249, 285
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	4 cut(s)	29, 52, 114, 677
MluCI	AATT	5 cut(s)	83, 143, 249, 285, 534
Mly113I	GGCGCC	1 cut(s)	689
MmeI	TCCRAC	1 cut(s)	401
MnlI	CCTC	4 cut(s)	161, 166, 417, 677
MseI	TTAA	2 cut(s)	60, 90
MspA1I	CMGCKG	1 cut(s)	686
MspI	CCGG	4 cut(s)	704, 724, 731, 746
MspR9I	CCNGG	1 cut(s)	162
MunI	CAATTG	2 cut(s)	249, 285
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	3 cut(s)	233, 242, 287
NarI	GGCGCC	1 cut(s)	689
NdeII	GATC	4 cut(s)	55, 599, 768, 804
NlaIII	CATG	3 cut(s)	217, 313, 393
NlaIV	GGNNCC	4 cut(s)	400, 674, 690, 750
NmuCI	GTSAC	3 cut(s)	360, 483, 736
NspI	RCATGY	1 cut(s)	393
PfeI	GAWTC	2 cut(s)	20, 760
PkrI	GCNGC	3 cut(s)	226, 244, 688
PluTI	GGCGCC	1 cut(s)	692
Psp6I	CCWGG	1 cut(s)	160
PspEI	GGTNACC	1 cut(s)	483
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	4 cut(s)	400, 674, 690, 750
PspPI	GGNCC	1 cut(s)	748
PstNI	CAGNNNCTG	1 cut(s)	829
PsuI	RGATCY	1 cut(s)	55
RsaI	GTAC	1 cut(s)	501
RsaNI	GTAC	1 cut(s)	500
SaqAI	TTAA	2 cut(s)	60, 90
SatI	GCNGC	3 cut(s)	225, 243, 687
Sau3AI	GATC	4 cut(s)	55, 599, 768, 804
Sau96I	GGNCC	1 cut(s)	748
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	4 cut(s)	29, 52, 114, 677
SfaNI	GCATC	2 cut(s)	449, 796
SfcI	CTRYAG	1 cut(s)	830
SfoI	GGCGCC	1 cut(s)	690
SmlI	CTYRAG	2 cut(s)	15, 41
SmoI	CTYRAG	2 cut(s)	15, 41
Sse9I	AATT	5 cut(s)	83, 143, 249, 285, 534
SsiI	CCGC	4 cut(s)	545, 579, 630, 686
SspDI	GGCGCC	1 cut(s)	688
SspMI	CTAG	2 cut(s)	68, 152
StyD4I	CCNGG	1 cut(s)	160
TaaI	ACNGT	2 cut(s)	379, 643
TaqI	TCGA	2 cut(s)	23, 767
TasI	AATT	5 cut(s)	83, 143, 249, 285, 534
TatI	WGTACW	1 cut(s)	499
TauI	GCSGC	1 cut(s)	689
TfiI	GAWTC	2 cut(s)	20, 760
Tru1I	TTAA	2 cut(s)	60, 90
Tru9I	TTAA	2 cut(s)	60, 90
TscAI	CASTG	1 cut(s)	814
TseFI	GTSAC	3 cut(s)	360, 483, 736
TseI	GCWGC	2 cut(s)	224, 242
Tsp45I	GTSAC	3 cut(s)	360, 483, 736
TspDTI	ATGAA	3 cut(s)	186, 190, 230
TspGWI	ACGGA	1 cut(s)	753
TspRI	CASTG	1 cut(s)	814
XagI	CCTNNNNNAGG	1 cut(s)	165
XapI	RAATTY	1 cut(s)	83
XceI	RCATGY	1 cut(s)	393
XmiI	GTMKAC	1 cut(s)	564
XspI	CTAG	2 cut(s)	68, 152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.