Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003263

Physical Location & Seq

Genomic Coordinates Reverse (-)

31746722 .. 31748967

Gene Structure 2246 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G025420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGAAGCAGCTATTGAGTTACATCAGAAAATGATAACTGAAGGCATTCCATGTGATGTGAAAACATACACTGCATTAATCAATGGACTGCTAAGAAAGGGTGATTTACAATCTGCATCAGATCTTTACTCAAAGATGCTTTCGAAGGGGATTACACCTGATATCAACACATATACAGTTCTAATAAATGGCCTTTGTTGCAAACGACAATTGGAGAAGGCACGCAAAACCTTGGAATACATGAATAGAAGGAGAATGACTGCTAGGTTGTGGGTGCTCAATGCTCACTCCCATTTAGGAAGCTCTGAACTGTGCATAGCCTCACCTGGAAGAGATTGGGGGTTACATTCCTTCATTGGTGAAAACATGAAGGGAGCTGCGCGTGTGGCTTTTGCTGCTACAATTGGTAACTTTCTGCAAGGATGGGACAATGCTACAATTGCTGGGGCTATTGTTTACATCAAGGATGATTTTGATTTAAGTAGCTCGGTAGAAGGTCTTGTTGTGCCATGTCACTCATCGGGGCAACAGTTATTACAACATGCTCAGGAGGCATATCAGATTGGCTTGGTCGGAGGCCAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

195

Amino Acids

21.34

Weight (kDa)

7.64

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	1 - 31	2.6e-06	PPR repeat family
PPR_3	PF13812	7 - 63	9.2e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	19 - 66	9.3e-18	PPR repeat family
PPR	PF01535	22 - 51	7.8e-07	PPR repeat
PPR_1	PF12854	49 - 81	1.1e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003263)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10110
malus_domestica	MD02G1109100.v1.1 MD02G1109500.v1.1 MD15G1228300.v1.1
prunus_persica	Prupe.7G186000_v2.0.a1
pyrus_communis	pycom15g20340
rosa_chinensis	RchiOBHm_Chr1g0348791 RchiOBHm_Chr2g0096881 RchiOBHm_Chr2g0147991 RchiOBHm_Chr4g0410581 RchiOBHm_Chr7g0216381
rosa_laevigata	RLG00000016678
rosa_multiflora	Rmu_sc0000692.1_g000002 Rmu_sc0003743.1_g000031 Rmu_sc0007264.1_g000009 Rmu_sc0007806.1_g000019 Rmu_ssc0000215.1_g000006 Rmu_ssc0000433.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145190
rosa_rugosa	Rorug02G0061700
rosa_samantha	Rh1AG316900 Rh2AG109400 Rh2AG598500 Rh2BG111400 Rh2CG113500 Rh2DG112500 Rh4CG174300 Rh5BG370000 Rh5DG336900 Rh5DG401500 Rh5DG401600 Rh6DG244100 Rh7DG300200
rosa_wichuraiana	Rw1G028090 Rw2G008450 Rw7G025410 Rw7G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	382
AcuI	CTGAAG	1 cut(s)	60
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	4 cut(s)	11, 303, 377, 486
AluI	AGCT	4 cut(s)	11, 303, 377, 486
Alw21I	GWGCWC	1 cut(s)	279
AoxI	GGCC	2 cut(s)	190, 577
ApeKI	GCWGC	3 cut(s)	8, 377, 395
AseI	ATTAAT	1 cut(s)	77
Asp700I	GAANNNNTTC	1 cut(s)	45
AspLEI	GCGC	1 cut(s)	382
AsuHPI	GGTGA	3 cut(s)	113, 315, 371
AsuII	TTCGAA	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	3 cut(s)	20, 364, 382
BccI	CCATC	1 cut(s)	417
BciT130I	CCWGG	1 cut(s)	327
BfaI	CTAG	1 cut(s)	264
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	3 cut(s)	9, 378, 396
BlsI	GCNGC	3 cut(s)	10, 379, 397
Bme1390I	CCNGG	1 cut(s)	327
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	2 cut(s)	125, 126
Bpu10I	CCTNAGC	1 cut(s)	546
Bpu14I	TTCGAA	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	2 cut(s)	428, 472
BseMII	CTCAG	1 cut(s)	560
BseXI	GCAGC	3 cut(s)	20, 364, 382
BseYI	CCCAGC	1 cut(s)	443
Bsh1236I	CGCG	1 cut(s)	382
BshFI	GGCC	2 cut(s)	192, 579
BsiHKAI	GWGCWC	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	440
BsmI	GAATGC	1 cut(s)	45
BsnI	GGCC	2 cut(s)	192, 579
Bsp119I	TTCGAA	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	1 cut(s)	121
BspANI	GGCC	2 cut(s)	192, 579
BspCNI	CTCAG	1 cut(s)	559
BspFNI	CGCG	1 cut(s)	382
BspT104I	TTCGAA	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	3 cut(s)	178, 312, 531
Bst6I	CTCTTC	1 cut(s)	325
BstBI	TTCGAA	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	2 cut(s)	92, 546
BstF5I	GGATG	2 cut(s)	428, 472
BstFNI	CGCG	1 cut(s)	382
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	5 cut(s)	198, 386, 395, 440, 551
BstNI	CCWGG	1 cut(s)	327
BstNSI	RCATGY	1 cut(s)	545
BstSCI	CCNGG	1 cut(s)	325
BstUI	CGCG	1 cut(s)	382
BstV1I	GCAGC	3 cut(s)	20, 364, 382
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	2 cut(s)	192, 579
BtsCI	GGATG	2 cut(s)	428, 472
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	223
CfoI	GCGC	1 cut(s)	382
CviAII	CATG	5 cut(s)	51, 241, 367, 510, 542
DdeI	CTNAG	2 cut(s)	92, 546
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	325
EcoRV	GATATC	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	5 cut(s)	54, 244, 370, 513, 545
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	5 cut(s)	50, 240, 366, 509, 541
Fnu4HI	GCNGC	3 cut(s)	9, 378, 396
FokI	GGATG	2 cut(s)	435, 479
Fsp4HI	GCNGC	3 cut(s)	9, 378, 396
FspBI	CTAG	1 cut(s)	264
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	3 cut(s)	9, 378, 396
GsaI	CCCAGC	1 cut(s)	447
HaeIII	GGCC	2 cut(s)	192, 579
HhaI	GCGC	1 cut(s)	382
Hin1II	CATG	5 cut(s)	54, 244, 370, 513, 545
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HphI	GGTGA	3 cut(s)	113, 315, 371
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	5 cut(s)	27, 121, 307, 561, 575
Hpy188III	TCNNGA	1 cut(s)	548
Hpy8I	GTNNAC	1 cut(s)	457
HpyAV	CCTTC	7 cut(s)	35, 139, 211, 243, 361, 364, 488
HpyCH4III	ACNGT	3 cut(s)	178, 312, 531
HpyCH4V	TGCA	5 cut(s)	74, 116, 201, 315, 418
HpyF10VI	GCNNNNNNNGC	5 cut(s)	198, 386, 395, 440, 551
HpyF3I	CTNAG	2 cut(s)	92, 546
Hsp92II	CATG	5 cut(s)	54, 244, 370, 513, 545
HspAI	GCGC	1 cut(s)	380
Kzo9I	GATC	1 cut(s)	121
LmnI	GCTCC	1 cut(s)	374
LpnPI	CCDG	5 cut(s)	171, 312, 339, 429, 533
Lsp1109I	GCAGC	3 cut(s)	20, 364, 382
LweI	GCATC	2 cut(s)	125, 126
MaeI	CTAG	1 cut(s)	264
MaeIII	GTNAC	4 cut(s)	18, 342, 407, 512
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	1 cut(s)	342
MfeI	CAATTG	3 cut(s)	209, 402, 438
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	3 cut(s)	209, 402, 438
MmeI	TCCRAC	1 cut(s)	553
MnlI	CCTC	3 cut(s)	331, 544, 569
MroXI	GAANNNNTTC	1 cut(s)	45
MseI	TTAA	2 cut(s)	77, 479
MspR9I	CCNGG	1 cut(s)	327
MunI	CAATTG	3 cut(s)	209, 402, 438
Mva1269I	GAATGC	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	327
MvnI	CGCG	1 cut(s)	382
MwoI	GCNNNNNNNGC	5 cut(s)	198, 386, 395, 440, 551
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	5 cut(s)	54, 244, 370, 513, 545
NmuCI	GTSAC	1 cut(s)	512
NspI	RCATGY	1 cut(s)	545
NspV	TTCGAA	1 cut(s)	143
PctI	GAATGC	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	45
PkrI	GCNGC	3 cut(s)	10, 379, 397
PshBI	ATTAAT	1 cut(s)	77
Psp6I	CCWGG	1 cut(s)	325
PspFI	CCCAGC	1 cut(s)	443
PspGI	CCWGG	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	121
SaqAI	TTAA	2 cut(s)	77, 479
SatI	GCNGC	3 cut(s)	9, 378, 396
Sau3AI	GATC	1 cut(s)	121
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	9 cut(s)	13, 160, 233, 269, 305, 328, 379, 488, 499
SfaNI	GCATC	2 cut(s)	125, 126
SfuI	TTCGAA	1 cut(s)	143
Sse9I	AATT	3 cut(s)	209, 402, 438
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	325
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	3 cut(s)	178, 312, 531
TaqI	TCGA	1 cut(s)	143
TasI	AATT	3 cut(s)	209, 402, 438
Tru1I	TTAA	2 cut(s)	77, 479
Tru9I	TTAA	2 cut(s)	77, 479
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	1 cut(s)	512
TseI	GCWGC	3 cut(s)	8, 377, 395
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	3 cut(s)	257, 343, 383
TspRI	CASTG	1 cut(s)	76
VspI	ATTAAT	1 cut(s)	77
XceI	RCATGY	1 cut(s)	545
XmnI	GAANNNNTTC	1 cut(s)	45
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.