Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003263

Physical Location & Seq

Genomic Coordinates Reverse (-)

43093934 .. 43100108

Gene Structure 6175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG244100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1626 bp

ATGAGTGGCGCTGTGCTTGTTGCTGTTGCTGCTGCTGTTGGGAACTTATTGCAAGGATGGGACAACGCTACAATCGCAGCTTCCGTCTTGTACATAAAGAGGGAGTTCAATTTGGAGAGTCAACCTGCAGTGGAAGGGCTGATAGTGGCTATGTCACTTATAGGGGCAACTTTGGTTACAACATGCTCAGGAGCTGTAGCGGACAGGATAGGCCGCCGTCCTATGCTTATTATCTCTTCTGTGCTTTACTTTCTTAGTGGTATCGTAATGTTATGGGCTCCCAATGTTTATATCCTTCTCTTGGCTAGGCTTTTAGATGGATTGGGGATTGGTTTGGCAGTTACCCTTGTCCCGCTTTATATATCTGAGACAGCTCCACCTGAAATAAGGGGATCATTGAATACCCTTCCGCAGTTCACCGGCTCTGGTGGGATGTTCTTGTCTTATTGTATGGTTTTTGTGATGTCCTTGACGGAGGCACCAAGTTGGAGGTTGATGCTTGGGGTTCTAACTATTCCGTCCCTTGTTTATTTTGCATTGACTGTATTTTTCTTGCCTGAGTCTCCACGGTGGCTAGTGAGTAAGGGACGAATGCTTGAGGCAAAGAAAGTTTTACAGAGTCTGCGCGGCAGAGAAGACGTCTCTGGTGAGATGGCTTTGCTTGTTGAGGGTCTTGGAGTTGGGGGTGAGACATCTTTCGAGGAGTACATAATTGGGCCAGACAATGACCTTGTTGGTGACCATGAGTTATCTGTTGACAAGGATAAAATCAAATTATATGGGACTGAACAAGGTCAATCATGGGTTGCCAGACCTGTGACTGGACAAAGCACTATCGGCCTTGTGTCCCGGCATGGGAGCATGGCAAGTAAAAGCGGGCTTGTTGATCCTCTTGTCACACTCTTCGGCAGTGTTCATGAAAGGCTCCCTGATACAGGAAGCAAGGGCAGTATGCTTTTCCCACACTTTGGCAGCATGTTCAGTGTGGGAGGGAATCAACCCAGGCACGAAGAGTGGGATGAGGAGAGCCTTGCACCCAGAGAAGGCGATGACTATGCATCCGATGCAGGTGGCGGTGGCGATTCAGATGACAATTTGCATAGTCCATTGATCTCGCGTCAGACAACAAGCATTGAAAAGGGCATGGGCCCAACTAACCACGGAAGCCTTGTTAGCATGAGAAACAACAGTCTCCTAGGTGGCGATCCAGTCAGTAGCACTGGGATTGGTGGCGGTTGGCAGCTAGCATGGAAATGGTCTGAGAGAGATGGCCAGGATGGGCATAAGGAAGGAGGATTTAAAAGAATTTATTTGCACCAAGAAGGTGTCCCTGGATCTCGTCGTGGGTCTATTGTTTCAATACCTGGTGGTGATGTACCAGCAGATAGTGAGTTCATCCAGGCTTCTGCTTTGGTGAGCCAACCGGCTCTTTATTCCAGAGATCTTATCCAACAACATCATCCAGTTGGACCAGCAATGGTTCACCCAGCTGCAGCTTCTCGTAAAGGGACAACTTGGAGCGATCTTTTCGAACCAGGAGTCAAGCATGCTTTGGTTGTTGGTGTCGGAATTCAAATACTTCAGCAGGTAATTCTTGTGGCACGATTCCAATTAGATTATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

541

Amino Acids

57.85

Weight (kDa)

5.42

Isoelectric Point (pI)

41.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	7 - 223	1.5e-51	Sugar (and other) transporter
MFS_1	PF07690	13 - 198	3e-21	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003263)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10110
malus_domestica	MD02G1109100.v1.1 MD02G1109500.v1.1 MD15G1228300.v1.1
prunus_persica	Prupe.7G186000_v2.0.a1
pyrus_communis	pycom15g20340
rosa_chinensis	RchiOBHm_Chr1g0348791 RchiOBHm_Chr2g0096881 RchiOBHm_Chr2g0147991 RchiOBHm_Chr4g0410581 RchiOBHm_Chr7g0216381
rosa_laevigata	RLG00000016678
rosa_multiflora	Rmu_sc0000692.1_g000002 Rmu_sc0003743.1_g000031 Rmu_sc0007264.1_g000009 Rmu_sc0007806.1_g000019 Rmu_ssc0000215.1_g000006 Rmu_ssc0000433.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145190
rosa_rugosa	Rorug02G0061700
rosa_samantha	Rh1AG316900 Rh2AG109400 Rh2AG598500 Rh2BG111400 Rh2CG113500 Rh2DG112500 Rh4CG174300 Rh5BG370000 Rh5DG336900 Rh5DG401500 Rh5DG401600 Rh6DG244100 Rh7DG300200
rosa_wichuraiana	Rw1G028090 Rw2G008450 Rw7G025410 Rw7G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1058
AatII	GACGTC	1 cut(s)	642
Acc36I	ACCTGC	3 cut(s)	133, 1058, 1576
AccB1I	GGYRCC	1 cut(s)	478
AccB7I	CCANNNNNTGG	1 cut(s)	968
AccII	CGCG	2 cut(s)	627, 1117
AciI	CCGC	8 cut(s)	200, 214, 353, 410, 627, 876, 1074, 1233
AclWI	GGATC	4 cut(s)	400, 881, 1199, 1342
AcoI	YGGCCR	1 cut(s)	1270
AcsI	RAATTY	2 cut(s)	1305, 1569
AcuI	CTGAAG	1 cut(s)	1565
AcyI	GRCGYC	1 cut(s)	639
AfaI	GTAC	3 cut(s)	92, 707, 1377
AfiI	CCNNNNNNNGG	6 cut(s)	301, 821, 855, 935, 968, 1043
AgsI	TTSAA	5 cut(s)	109, 400, 1136, 1359, 1574
AjnI	CCWGG	6 cut(s)	1001, 1272, 1330, 1363, 1398, 1534
AluBI	AGCT	6 cut(s)	80, 194, 374, 1243, 1490, 1496
AluI	AGCT	6 cut(s)	80, 194, 374, 1243, 1490, 1496
Alw26I	GTCTC	5 cut(s)	362, 567, 646, 683, 1196
AlwI	GGATC	4 cut(s)	400, 881, 1199, 1342
AlwNI	CAGNNNCTG	2 cut(s)	194, 622
AoxI	GGCC	5 cut(s)	211, 716, 838, 1147, 1270
ApaI	GGGCCC	1 cut(s)	1151
ApeKI	GCWGC	7 cut(s)	29, 32, 77, 972, 1240, 1490, 1493
ApoI	RAATTY	2 cut(s)	1305, 1569
ArsI	GACNNNNNNTTYG	2 cut(s)	1524, 1556
AspA2I	CCTAGG	1 cut(s)	1195
AspLEI	GCGC	2 cut(s)	11, 627
AspS9I	GGNCC	4 cut(s)	716, 1147, 1148, 1469
AsuC2I	CCSGG	1 cut(s)	850
AsuHPI	GGTGA	7 cut(s)	409, 659, 698, 749, 1382, 1426, 1475
AsuII	TTCGAA	1 cut(s)	1530
AsuNHI	GCTAGC	1 cut(s)	1243
AvaII	GGWCC	1 cut(s)	1469
AvrII	CCTAGG	1 cut(s)	1195
BaeGI	GKGCMC	1 cut(s)	1151
BalI	TGGCCA	1 cut(s)	1272
BanI	GGYRCC	1 cut(s)	478
BanII	GRGCYC	2 cut(s)	280, 1151
BbsI	GAAGAC	1 cut(s)	642
BbvI	GCAGC	7 cut(s)	16, 19, 89, 984, 1252, 1477, 1505
BccI	CCATC	5 cut(s)	51, 311, 646, 1262, 1271
BceAI	ACGGC	1 cut(s)	201
BcgI	CGANNNNNNTGC	2 cut(s)	1037, 1071
BciT130I	CCWGG	6 cut(s)	1003, 1274, 1332, 1365, 1400, 1536
BcnI	CCSGG	1 cut(s)	850
BcoDI	GTCTC	5 cut(s)	362, 567, 646, 683, 1196
BfaI	CTAG	4 cut(s)	306, 575, 1196, 1244
BfmI	CTRYAG	3 cut(s)	126, 195, 1491
BfoI	RGCGCY	1 cut(s)	12
BfuAI	ACCTGC	3 cut(s)	133, 1058, 1576
BglII	AGATCT	1 cut(s)	1441
BisI	GCNGC	9 cut(s)	30, 33, 78, 214, 628, 973, 1241, 1491, 1494
BlnI	CCTAGG	1 cut(s)	1195
BlsI	GCNGC	9 cut(s)	31, 34, 79, 215, 629, 974, 1242, 1492, 1495
Bme1390I	CCNGG	7 cut(s)	850, 1003, 1274, 1332, 1365, 1400, 1536
Bme18I	GGWCC	1 cut(s)	1469
BmgT120I	GGNCC	4 cut(s)	716, 1147, 1148, 1469
BmiI	GGNNCC	4 cut(s)	279, 480, 926, 1149
BmrFI	CCNGG	7 cut(s)	850, 1003, 1274, 1332, 1365, 1400, 1536
BmrI	ACTGGG	1 cut(s)	1230
BmsI	GCATC	3 cut(s)	486, 1054, 1067
BmtI	GCTAGC	1 cut(s)	1247
BmuI	ACTGGG	1 cut(s)	1230
BpiI	GAAGAC	1 cut(s)	642
Bpu10I	CCTNAGC	1 cut(s)	187
Bpu14I	TTCGAA	1 cut(s)	1530
BpuEI	CTTGAG	1 cut(s)	617
BpuMI	CCSGG	1 cut(s)	850
BsaHI	GRCGYC	1 cut(s)	639
BsaJI	CCNNGG	5 cut(s)	566, 1001, 1159, 1195, 1330
Bsc4I	CCNNNNNNNGG	6 cut(s)	301, 821, 855, 935, 968, 1043
Bse118I	RCCGGY	2 cut(s)	419, 1423
Bse1I	ACTGG	4 cut(s)	826, 1208, 1225, 1463
Bse3DI	GCAATG	1 cut(s)	1482
BseBI	CCWGG	6 cut(s)	1003, 1274, 1332, 1365, 1400, 1536
BseDI	CCNNGG	5 cut(s)	566, 1001, 1159, 1195, 1330
BseGI	GGATG	7 cut(s)	62, 438, 1024, 1058, 1282, 1395, 1459
BseLI	CCNNNNNNNGG	6 cut(s)	301, 821, 855, 935, 968, 1043
BseMI	GCAATG	1 cut(s)	1482
BseMII	CTCAG	4 cut(s)	201, 357, 549, 1251
BseNI	ACTGG	4 cut(s)	826, 1208, 1225, 1463
BseRI	GAGGAG	2 cut(s)	716, 1037
BseSI	GKGCMC	1 cut(s)	1151
BseXI	GCAGC	7 cut(s)	16, 19, 89, 984, 1252, 1477, 1505
BseYI	CCCAGC	1 cut(s)	1486
Bsh1236I	CGCG	2 cut(s)	627, 1117
BshFI	GGCC	5 cut(s)	213, 718, 840, 1149, 1272
BshNI	GGYRCC	1 cut(s)	478
BsiSI	CCGG	3 cut(s)	420, 850, 1424
BslFI	GGGAC	8 cut(s)	74, 335, 505, 600, 796, 832, 1313, 1522
BslI	CCNNNNNNNGG	6 cut(s)	301, 821, 855, 935, 968, 1043
BsmAI	GTCTC	5 cut(s)	362, 567, 646, 683, 1196
BsmBI	CGTCTC	1 cut(s)	646
BsmFI	GGGAC	8 cut(s)	74, 335, 505, 600, 796, 832, 1313, 1522
BsmI	GAATGC	1 cut(s)	597
BsnI	GGCC	5 cut(s)	213, 718, 840, 1149, 1272
Bsp119I	TTCGAA	1 cut(s)	1530
Bsp120I	GGGCCC	1 cut(s)	1147
Bsp1286I	GDGCHC	2 cut(s)	280, 1151
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	7 cut(s)	392, 886, 1110, 1204, 1334, 1441, 1522
BspACI	CCGC	8 cut(s)	200, 214, 353, 410, 627, 876, 1074, 1233
BspANI	GGCC	5 cut(s)	213, 718, 840, 1149, 1272
BspCNI	CTCAG	4 cut(s)	200, 358, 550, 1252
BspFNI	CGCG	2 cut(s)	627, 1117
BspHI	TCATGA	1 cut(s)	916
BspLI	GGNNCC	4 cut(s)	279, 480, 926, 1149
BspMAI	CTGCAG	2 cut(s)	130, 1495
BspMI	ACCTGC	3 cut(s)	133, 1058, 1576
BspOI	GCTAGC	1 cut(s)	1247
BspPI	GGATC	4 cut(s)	400, 881, 1199, 1342
BspT104I	TTCGAA	1 cut(s)	1530
BspT107I	GGYRCC	1 cut(s)	478
BsrDI	GCAATG	1 cut(s)	1482
BsrFI	RCCGGY	2 cut(s)	419, 1423
BsrGI	TGTACA	1 cut(s)	90
BsrI	ACTGG	4 cut(s)	826, 1208, 1225, 1463
BssAI	RCCGGY	2 cut(s)	419, 1423
BssECI	CCNNGG	5 cut(s)	566, 1001, 1159, 1195, 1330
BssMI	GATC	7 cut(s)	392, 886, 1110, 1204, 1334, 1441, 1522
BssNI	GRCGYC	1 cut(s)	639
BssT1I	CCWWGG	1 cut(s)	1195
Bst2UI	CCWGG	6 cut(s)	1003, 1274, 1332, 1365, 1400, 1536
Bst4CI	ACNGT	3 cut(s)	544, 570, 1190
Bst6I	CTCTTC	3 cut(s)	241, 908, 1005
BstACI	GRCGYC	1 cut(s)	639
BstAPI	GCANNNNNTGC	1 cut(s)	1064
BstAUI	TGTACA	1 cut(s)	90
BstBI	TTCGAA	1 cut(s)	1530
BstC8I	GCNNGC	3 cut(s)	878, 1245, 1548
BstDEI	CTNAG	5 cut(s)	187, 254, 366, 558, 1260
BstDSI	CCRYGG	2 cut(s)	566, 1159
BstEII	GGTNACC	1 cut(s)	737
BstENI	CCTNNNNNAGG	1 cut(s)	933
BstF5I	GGATG	7 cut(s)	62, 438, 1024, 1058, 1282, 1395, 1459
BstFNI	CGCG	2 cut(s)	627, 1117
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	11, 627
BstKTI	GATC	7 cut(s)	395, 889, 1113, 1207, 1337, 1444, 1525
BstMAI	GTCTC	5 cut(s)	362, 567, 646, 683, 1196
BstMBI	GATC	7 cut(s)	392, 886, 1110, 1204, 1334, 1441, 1522
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 74, 837, 1064, 1173
BstNI	CCWGG	6 cut(s)	1003, 1274, 1332, 1365, 1400, 1536
BstNSI	RCATGY	3 cut(s)	186, 979, 1550
BstPI	GGTNACC	1 cut(s)	737
BstSCI	CCNGG	7 cut(s)	848, 1001, 1272, 1330, 1363, 1398, 1534
BstSFI	CTRYAG	3 cut(s)	126, 195, 1491
BstSLI	GKGCMC	1 cut(s)	1151
BstUI	CGCG	2 cut(s)	627, 1117
BstV1I	GCAGC	7 cut(s)	16, 19, 89, 984, 1252, 1477, 1505
BstV2I	GAAGAC	1 cut(s)	642
BstX2I	RGATCY	2 cut(s)	1334, 1441
BstYI	RGATCY	2 cut(s)	1334, 1441
BsuRI	GGCC	5 cut(s)	213, 718, 840, 1149, 1272
BtgI	CCRYGG	2 cut(s)	566, 1159
BtgZI	GCGATG	1 cut(s)	1062
BtsCI	GGATG	7 cut(s)	62, 438, 1024, 1058, 1282, 1395, 1459
BtsI	GCAGTG	2 cut(s)	135, 916
BtsIMutI	CAGTG	4 cut(s)	135, 916, 988, 1218
BveI	ACCTGC	3 cut(s)	133, 1058, 1576
Cac8I	GCNNGC	3 cut(s)	878, 1245, 1548
CaiI	CAGNNNCTG	2 cut(s)	194, 622
CciI	TCATGA	1 cut(s)	916
CfoI	GCGC	2 cut(s)	11, 627
Cfr10I	RCCGGY	2 cut(s)	419, 1423
Cfr13I	GGNCC	4 cut(s)	716, 1147, 1148, 1469
CseI	GACGC	1 cut(s)	1106
CsiI	ACCWGGT	1 cut(s)	1363
Csp6I	GTAC	3 cut(s)	91, 706, 1376
CviQI	GTAC	3 cut(s)	91, 706, 1376
DdeI	CTNAG	5 cut(s)	187, 254, 366, 558, 1260
DpnI	GATC	7 cut(s)	394, 888, 1112, 1206, 1336, 1443, 1524
DpnII	GATC	7 cut(s)	392, 886, 1110, 1204, 1334, 1441, 1522
DraI	TTTAAA	1 cut(s)	1300
EaeI	YGGCCR	1 cut(s)	1270
Eam1104I	CTCTTC	3 cut(s)	241, 908, 1005
EarI	CTCTTC	3 cut(s)	241, 908, 1005
Eco130I	CCWWGG	1 cut(s)	1195
Eco24I	GRGCYC	2 cut(s)	280, 1151
Eco47I	GGWCC	1 cut(s)	1469
Eco57I	CTGAAG	1 cut(s)	1565
Eco91I	GGTNACC	1 cut(s)	737
EcoNI	CCTNNNNNAGG	1 cut(s)	933
EcoO65I	GGTNACC	1 cut(s)	737
EcoRI	GAATTC	1 cut(s)	1569
EcoRII	CCWGG	6 cut(s)	1001, 1272, 1330, 1363, 1398, 1534
EcoT14I	CCWWGG	1 cut(s)	1195
EcoT22I	ATGCAT	1 cut(s)	1060
EcoT38I	GRGCYC	2 cut(s)	280, 1151
ErhI	CCWWGG	1 cut(s)	1195
Esp3I	CGTCTC	1 cut(s)	646
FaqI	GGGAC	8 cut(s)	74, 335, 505, 600, 796, 832, 1313, 1522
FauI	CCCGC	2 cut(s)	360, 869
Fnu4HI	GCNGC	9 cut(s)	30, 33, 78, 214, 628, 973, 1241, 1491, 1494
FokI	GGATG	7 cut(s)	69, 445, 1031, 1045, 1289, 1382, 1446
FriOI	GRGCYC	2 cut(s)	280, 1151
Fsp4HI	GCNGC	9 cut(s)	30, 33, 78, 214, 628, 973, 1241, 1491, 1494
FspBI	CTAG	4 cut(s)	306, 575, 1196, 1244
GlaI	GCGC	2 cut(s)	10, 626
GluI	GCNGC	9 cut(s)	30, 33, 78, 214, 628, 973, 1241, 1491, 1494
GsaI	CCCAGC	1 cut(s)	1490
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	5 cut(s)	213, 718, 840, 1149, 1272
HapII	CCGG	3 cut(s)	420, 850, 1424
HgaI	GACGC	1 cut(s)	1106
HhaI	GCGC	2 cut(s)	11, 627
Hin1I	GRCGYC	1 cut(s)	639
Hin6I	GCGC	2 cut(s)	9, 625
HinP1I	GCGC	2 cut(s)	9, 625
HincII	GTYRAC	2 cut(s)	122, 757
HindII	GTYRAC	2 cut(s)	122, 757
HinfI	GANTC	7 cut(s)	118, 560, 619, 994, 1082, 1539, 1605
HpaII	CCGG	3 cut(s)	420, 850, 1424
HphI	GGTGA	7 cut(s)	409, 659, 698, 749, 1382, 1426, 1475
Hpy166II	GTNNAC	4 cut(s)	122, 417, 757, 1483
Hpy188I	TCNGA	6 cut(s)	367, 1063, 1087, 1122, 1261, 1568
Hpy188III	TCNNGA	3 cut(s)	189, 917, 1437
Hpy8I	GTNNAC	4 cut(s)	122, 417, 757, 1483
Hpy99I	CGWCG	1 cut(s)	1344
HpyAV	CCTTC	6 cut(s)	128, 305, 416, 1037, 1283, 1316
HpyCH4III	ACNGT	3 cut(s)	544, 570, 1190
HpyCH4IV	ACGT	1 cut(s)	639
HpyCH4V	TGCA	9 cut(s)	52, 128, 536, 1034, 1058, 1067, 1099, 1315, 1493
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 74, 837, 1064, 1173
HpyF3I	CTNAG	5 cut(s)	187, 254, 366, 558, 1260
HpySE526I	ACGT	1 cut(s)	639
Hsp92I	GRCGYC	1 cut(s)	639
HspAI	GCGC	2 cut(s)	9, 625
Kzo9I	GATC	7 cut(s)	392, 886, 1110, 1204, 1334, 1441, 1522
LmnI	GCTCC	6 cut(s)	191, 283, 379, 858, 930, 1518
Lsp1109I	GCAGC	7 cut(s)	16, 19, 89, 984, 1252, 1477, 1505
LweI	GCATC	3 cut(s)	486, 1054, 1067
MabI	ACCWGGT	1 cut(s)	1363
MaeI	CTAG	4 cut(s)	306, 575, 1196, 1244
MaeII	ACGT	1 cut(s)	639
MaeIII	GTNAC	6 cut(s)	153, 175, 340, 737, 817, 895
MalI	GATC	7 cut(s)	394, 888, 1112, 1206, 1336, 1443, 1524
MboI	GATC	7 cut(s)	392, 886, 1110, 1204, 1334, 1441, 1522
MboII	GAAGA	4 cut(s)	228, 647, 895, 1022
MflI	RGATCY	2 cut(s)	1334, 1441
MhlI	GDGCHC	2 cut(s)	280, 1151
MlsI	TGGCCA	1 cut(s)	1272
MluCI	AATT	8 cut(s)	109, 711, 773, 1093, 1305, 1569, 1590, 1610
MluNI	TGGCCA	1 cut(s)	1272
MlyI	GAGTC	4 cut(s)	127, 569, 628, 1548
MmeI	TCCRAC	4 cut(s)	467, 1447, 1474, 1546
Mox20I	TGGCCA	1 cut(s)	1272
Mph1103I	ATGCAT	1 cut(s)	1060
MscI	TGGCCA	1 cut(s)	1272
MseI	TTAA	2 cut(s)	1299, 1624
MslI	CAYNNNNRTG	1 cut(s)	1252
Msp20I	TGGCCA	1 cut(s)	1272
MspA1I	CMGCKG	1 cut(s)	1490
MspI	CCGG	3 cut(s)	420, 850, 1424
MspR9I	CCNGG	7 cut(s)	850, 1003, 1274, 1332, 1365, 1400, 1536
Mva1269I	GAATGC	1 cut(s)	597
MvaI	CCWGG	6 cut(s)	1003, 1274, 1332, 1365, 1400, 1536
MvnI	CGCG	2 cut(s)	627, 1117
MwoI	GCNNNNNNNGC	5 cut(s)	29, 74, 837, 1064, 1173
NciI	CCSGG	1 cut(s)	850
NdeII	GATC	7 cut(s)	392, 886, 1110, 1204, 1334, 1441, 1522
NheI	GCTAGC	1 cut(s)	1243
NlaIV	GGNNCC	4 cut(s)	279, 480, 926, 1149
NmuCI	GTSAC	4 cut(s)	153, 737, 817, 895
NsiI	ATGCAT	1 cut(s)	1060
NspI	RCATGY	3 cut(s)	186, 979, 1550
NspV	TTCGAA	1 cut(s)	1530
PaeI	GCATGC	1 cut(s)	1550
PagI	TCATGA	1 cut(s)	916
PaqCI	CACCTGC	1 cut(s)	1058
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PctI	GAATGC	1 cut(s)	597
PfeI	GAWTC	3 cut(s)	994, 1082, 1605
PflMI	CCANNNNNTGG	1 cut(s)	968
PkrI	GCNGC	9 cut(s)	31, 34, 79, 215, 629, 974, 1242, 1492, 1495
PleI	GAGTC	4 cut(s)	126, 568, 627, 1547
PpsI	GAGTC	4 cut(s)	126, 568, 627, 1547
Psp6I	CCWGG	6 cut(s)	1001, 1272, 1330, 1363, 1398, 1534
PspEI	GGTNACC	1 cut(s)	737
PspFI	CCCAGC	1 cut(s)	1486
PspGI	CCWGG	6 cut(s)	1001, 1272, 1330, 1363, 1398, 1534
PspN4I	GGNNCC	4 cut(s)	279, 480, 926, 1149
PspOMI	GGGCCC	1 cut(s)	1147
PspPI	GGNCC	4 cut(s)	716, 1147, 1148, 1469
PstI	CTGCAG	2 cut(s)	130, 1495
PstNI	CAGNNNCTG	2 cut(s)	194, 622
PsuI	RGATCY	2 cut(s)	1334, 1441
PvuII	CAGCTG	1 cut(s)	1490
RsaI	GTAC	3 cut(s)	92, 707, 1377
RsaNI	GTAC	3 cut(s)	91, 706, 1376
RseI	CAYNNNNRTG	1 cut(s)	1252
SaqAI	TTAA	2 cut(s)	1299, 1624
SatI	GCNGC	9 cut(s)	30, 33, 78, 214, 628, 973, 1241, 1491, 1494
Sau3AI	GATC	7 cut(s)	392, 886, 1110, 1204, 1334, 1441, 1522
Sau96I	GGNCC	4 cut(s)	716, 1147, 1148, 1469
SchI	GAGTC	4 cut(s)	127, 569, 628, 1548
ScrFI	CCNGG	7 cut(s)	850, 1003, 1274, 1332, 1365, 1400, 1536
SduI	GDGCHC	2 cut(s)	280, 1151
SexAI	ACCWGGT	1 cut(s)	1363
SfaNI	GCATC	3 cut(s)	486, 1054, 1067
SfcI	CTRYAG	3 cut(s)	126, 195, 1491
SfuI	TTCGAA	1 cut(s)	1530
SinI	GGWCC	1 cut(s)	1469
SmiMI	CAYNNNNRTG	1 cut(s)	1252
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
SphI	GCATGC	1 cut(s)	1550
Sse9I	AATT	8 cut(s)	109, 711, 773, 1093, 1305, 1569, 1590, 1610
SsiI	CCGC	8 cut(s)	200, 214, 353, 410, 627, 876, 1074, 1233
SspMI	CTAG	4 cut(s)	306, 575, 1196, 1244
StyD4I	CCNGG	7 cut(s)	848, 1001, 1272, 1330, 1363, 1398, 1534
StyI	CCWWGG	1 cut(s)	1195
TaaI	ACNGT	3 cut(s)	544, 570, 1190
TaiI	ACGT	1 cut(s)	642
TaqI	TCGA	2 cut(s)	699, 1530
TasI	AATT	8 cut(s)	109, 711, 773, 1093, 1305, 1569, 1590, 1610
TatI	WGTACW	2 cut(s)	90, 705
TauI	GCSGC	2 cut(s)	216, 630
TfiI	GAWTC	3 cut(s)	994, 1082, 1605
Tru1I	TTAA	2 cut(s)	1299, 1624
Tru9I	TTAA	2 cut(s)	1299, 1624
TscAI	CASTG	4 cut(s)	135, 916, 988, 1225
TseFI	GTSAC	4 cut(s)	153, 737, 817, 895
TseI	GCWGC	7 cut(s)	29, 32, 77, 972, 1240, 1490, 1493
Tsp45I	GTSAC	4 cut(s)	153, 737, 817, 895
TspDTI	ATGAA	3 cut(s)	905, 933, 1384
TspGWI	ACGGA	4 cut(s)	73, 488, 507, 1176
TspRI	CASTG	4 cut(s)	135, 916, 988, 1225
Van91I	CCANNNNNTGG	1 cut(s)	968
VpaK11BI	GGWCC	1 cut(s)	1469
XagI	CCTNNNNNAGG	1 cut(s)	933
XapI	RAATTY	2 cut(s)	1305, 1569
XceI	RCATGY	3 cut(s)	186, 979, 1550
XmaJI	CCTAGG	1 cut(s)	1195
XspI	CTAG	4 cut(s)	306, 575, 1196, 1244
ZraI	GACGTC	1 cut(s)	640
Zsp2I	ATGCAT	1 cut(s)	1060

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.