Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003263

Physical Location & Seq

Genomic Coordinates Reverse (-)

58121162 .. 58121748

Gene Structure 587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG370000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAAGGGAGCTGCGCTTGTGGCTTTTGCTGCTACAATTGGTAACTTTCTGCAAGGATGGGACAATGCTACAATTGCTGGGGCTATTGTTTACATCACGGACGATTTTGATTTAGGTAGCTTGGTAGAAGGTCTTGTTGTGGCCATGTCACTCATCGGGGCAACAGTTATTACAACATGCTCAGGAGCCATATCAGATTGGCTTGGTCGGAGGCCAATGCTAATAGCATCATCAGTTCTTTATTTTGTGAGTGGCTTGGTGATGTTGTGGTCACCCAATGTGTATGTACTATGTCTTGCAAGGCTATTAGATGGATTTGGAATTGGTTTAGCGGTTACTCTTGTCCCAGTCTACATATCCGAGACCGCCCCATCAGATATTAGGGGATCGTTGAATACTCTTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0034219 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

135

Amino Acids

14.1

Weight (kDa)

4.27

Isoelectric Point (pI)

29.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	7 - 134	7.6e-27	Sugar (and other) transporter
MFS_1	PF07690	12 - 132	6e-17	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003263)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10110
malus_domestica	MD02G1109100.v1.1 MD02G1109500.v1.1 MD15G1228300.v1.1
prunus_persica	Prupe.7G186000_v2.0.a1
pyrus_communis	pycom15g20340
rosa_chinensis	RchiOBHm_Chr1g0348791 RchiOBHm_Chr2g0096881 RchiOBHm_Chr2g0147991 RchiOBHm_Chr4g0410581 RchiOBHm_Chr7g0216381
rosa_laevigata	RLG00000016678
rosa_multiflora	Rmu_sc0000692.1_g000002 Rmu_sc0003743.1_g000031 Rmu_sc0007264.1_g000009 Rmu_sc0007806.1_g000019 Rmu_ssc0000215.1_g000006 Rmu_ssc0000433.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145190
rosa_rugosa	Rorug02G0061700
rosa_samantha	Rh1AG316900 Rh2AG109400 Rh2AG598500 Rh2BG111400 Rh2CG113500 Rh2DG112500 Rh4CG174300 Rh5BG370000 Rh5DG336900 Rh5DG401500 Rh5DG401600 Rh6DG244100 Rh7DG300200
rosa_wichuraiana	Rw1G028090 Rw2G008450 Rw7G025410 Rw7G025420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	351
AciI	CCGC	2 cut(s)	332, 366
AclWI	GGATC	1 cut(s)	394
AcoI	YGGCCR	1 cut(s)	141
AfaI	GTAC	1 cut(s)	288
AgsI	TTSAA	1 cut(s)	394
AluBI	AGCT	2 cut(s)	11, 120
AluI	AGCT	2 cut(s)	11, 120
Alw26I	GTCTC	1 cut(s)	356
AlwI	GGATC	1 cut(s)	394
AoxI	GGCC	2 cut(s)	141, 212
ApeKI	GCWGC	2 cut(s)	11, 29
AspLEI	GCGC	1 cut(s)	16
AsuHPI	GGTGA	2 cut(s)	264, 271
BalI	TGGCCA	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	3 cut(s)	51, 305, 379
BcoDI	GTCTC	1 cut(s)	356
BisI	GCNGC	2 cut(s)	12, 30
BlsI	GCNGC	2 cut(s)	13, 31
BmiI	GGNNCC	1 cut(s)	187
BmrI	ACTGGG	1 cut(s)	341
BmsI	GCATC	1 cut(s)	236
BmuI	ACTGGG	1 cut(s)	341
Bpu10I	CCTNAGC	1 cut(s)	181
BsaI	GGTCTC	1 cut(s)	356
Bse1I	ACTGG	1 cut(s)	347
BseGI	GGATG	1 cut(s)	62
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	347
BseXI	GCAGC	1 cut(s)	16
BseYI	CCCAGC	1 cut(s)	77
BshFI	GGCC	2 cut(s)	143, 214
BslFI	GGGAC	2 cut(s)	74, 329
BsmAI	GTCTC	1 cut(s)	356
BsmFI	GGGAC	2 cut(s)	74, 329
BsnI	GGCC	2 cut(s)	143, 214
Bso31I	GGTCTC	1 cut(s)	356
Bsp143I	GATC	1 cut(s)	386
BspACI	CCGC	2 cut(s)	332, 366
BspANI	GGCC	2 cut(s)	143, 214
BspCNI	CTCAG	1 cut(s)	194
BspLI	GGNNCC	1 cut(s)	187
BspPI	GGATC	1 cut(s)	394
BspTNI	GGTCTC	1 cut(s)	356
BsrI	ACTGG	1 cut(s)	347
BssMI	GATC	1 cut(s)	386
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	405
BstDEI	CTNAG	1 cut(s)	181
BstEII	GGTNACC	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	1 cut(s)	389
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	1 cut(s)	386
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 29, 74
BstNSI	RCATGY	1 cut(s)	180
BstPI	GGTNACC	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	16
BsuRI	GGCC	2 cut(s)	143, 214
BtsCI	GGATG	1 cut(s)	62
CfoI	GCGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	287
CviAII	CATG	2 cut(s)	145, 177
CviQI	GTAC	1 cut(s)	287
DdeI	CTNAG	1 cut(s)	181
DpnI	GATC	1 cut(s)	388
DpnII	GATC	1 cut(s)	386
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco31I	GGTCTC	1 cut(s)	356
Eco91I	GGTNACC	1 cut(s)	270
EcoO65I	GGTNACC	1 cut(s)	270
FaeI	CATG	2 cut(s)	148, 180
FaiI	YATR	7 cut(s)	146, 178, 191, 285, 292, 356, 406
FaqI	GGGAC	2 cut(s)	74, 329
FatI	CATG	2 cut(s)	144, 176
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	2 cut(s)	12, 30
FokI	GGATG	1 cut(s)	69
Fsp4HI	GCNGC	2 cut(s)	12, 30
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	2 cut(s)	12, 30
GsaI	CCCAGC	1 cut(s)	81
HaeIII	GGCC	2 cut(s)	143, 214
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	2 cut(s)	148, 180
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HphI	GGTGA	2 cut(s)	264, 271
Hpy166II	GTNNAC	2 cut(s)	91, 352
Hpy188I	TCNGA	4 cut(s)	196, 210, 361, 376
Hpy188III	TCNNGA	1 cut(s)	183
Hpy8I	GTNNAC	2 cut(s)	91, 352
HpyAV	CCTTC	1 cut(s)	122
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	2 cut(s)	52, 299
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 29, 74
HpyF3I	CTNAG	1 cut(s)	181
Hsp92II	CATG	2 cut(s)	148, 180
HspAI	GCGC	1 cut(s)	14
Kzo9I	GATC	1 cut(s)	386
LmnI	GCTCC	2 cut(s)	8, 185
LpnPI	CCDG	3 cut(s)	63, 168, 360
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	1 cut(s)	236
MaeIII	GTNAC	4 cut(s)	41, 147, 270, 334
MalI	GATC	1 cut(s)	388
MboI	GATC	1 cut(s)	386
MboII	GAAGA	1 cut(s)	392
MfeI	CAATTG	2 cut(s)	36, 72
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	3 cut(s)	36, 72, 321
MluNI	TGGCCA	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	188
MnlI	CCTC	1 cut(s)	204
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
Msp20I	TGGCCA	1 cut(s)	143
MunI	CAATTG	2 cut(s)	36, 72
MwoI	GCNNNNNNNGC	3 cut(s)	20, 29, 74
NdeII	GATC	1 cut(s)	386
NlaIII	CATG	2 cut(s)	148, 180
NlaIV	GGNNCC	1 cut(s)	187
NmuCI	GTSAC	2 cut(s)	147, 270
NspI	RCATGY	1 cut(s)	180
PkrI	GCNGC	2 cut(s)	13, 31
PspEI	GGTNACC	1 cut(s)	270
PspFI	CCCAGC	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	187
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
SatI	GCNGC	2 cut(s)	12, 30
Sau3AI	GATC	1 cut(s)	386
SetI	ASST	4 cut(s)	13, 118, 122, 133
SfaNI	GCATC	1 cut(s)	236
Sse9I	AATT	3 cut(s)	36, 72, 321
SsiI	CCGC	2 cut(s)	332, 366
TaaI	ACNGT	1 cut(s)	166
TasI	AATT	3 cut(s)	36, 72, 321
TatI	WGTACW	1 cut(s)	286
TseFI	GTSAC	2 cut(s)	147, 270
TseI	GCWGC	2 cut(s)	11, 29
Tsp45I	GTSAC	2 cut(s)	147, 270
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	113
XceI	RCATGY	1 cut(s)	180
XmiI	GTMKAC	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.