repressing transcription factor binding
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G63900 |
| fragaria_vesca | FvH4_2g33101 FvH4_2g33110 |
| malus_domestica | MD03G1066400.v1.1 MD08G1084100.v1.1 MD15G1070200.v1.1 |
| prunus_persica | Prupe.1G423000_v2.0.a1 |
| pyrus_communis | pycom08g06970 |
| rosa_chinensis | RchiOBHm_Chr6g0309551 RchiOBHm_Chr6g0309571 |
| rosa_laevigata | RLG00000010552 RLG00000010554 |
| rosa_multiflora | Rmu_co8092108.1_g000001 Rmu_co8455997.1_g000001 Rmu_co8522085.1_g000002 Rmu_sc0007283.1_g000012 Rmu_sc0007283.1_g000014 Rmu_sc0024715.1_g000002 Rmu_sc0024715.1_g000003 Rmu_sc0030536.1_g000004 Rmu_sc0042371.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00159310 |
| rosa_rugosa | Rorug06G0372800 Rorug06G0372900 |
| rosa_samantha | Rh6AG486200 Rh6AG486400 Rh6BG204300 Rh6BG495600 Rh6BG495800 Rh6CG500600 Rh6CG500700 Rh6DG486500 Rh6DG486600 |
| rosa_wichuraiana | Rw6G042350 Rw6G042360 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 223 |
| AcsI | RAATTY | 1 cut(s) | 216 |
| AcyI | GRCGYC | 1 cut(s) | 64 |
| AfaI | GTAC | 1 cut(s) | 91 |
| AgsI | TTSAA | 3 cut(s) | 169, 238, 387 |
| AleI | CACNNNNGTG | 1 cut(s) | 105 |
| AoxI | GGCC | 1 cut(s) | 223 |
| ApoI | RAATTY | 1 cut(s) | 216 |
| AsuHPI | GGTGA | 3 cut(s) | 122, 197, 277 |
| BalI | TGGCCA | 1 cut(s) | 225 |
| BbsI | GAAGAC | 1 cut(s) | 375 |
| BccI | CCATC | 1 cut(s) | 145 |
| BceAI | ACGGC | 1 cut(s) | 192 |
| BclI | TGATCA | 1 cut(s) | 127 |
| BpiI | GAAGAC | 1 cut(s) | 375 |
| BsaHI | GRCGYC | 1 cut(s) | 64 |
| BsaJI | CCNNGG | 1 cut(s) | 160 |
| Bse1I | ACTGG | 1 cut(s) | 194 |
| BseDI | CCNNGG | 1 cut(s) | 160 |
| BseGI | GGATG | 3 cut(s) | 54, 274, 321 |
| BseNI | ACTGG | 1 cut(s) | 194 |
| BshFI | GGCC | 1 cut(s) | 225 |
| BsnI | GGCC | 1 cut(s) | 225 |
| Bsp143I | GATC | 1 cut(s) | 127 |
| BspANI | GGCC | 1 cut(s) | 225 |
| BsrI | ACTGG | 1 cut(s) | 194 |
| BssECI | CCNNGG | 1 cut(s) | 160 |
| BssMI | GATC | 1 cut(s) | 127 |
| BssNI | GRCGYC | 1 cut(s) | 64 |
| BssT1I | CCWWGG | 1 cut(s) | 160 |
| Bst4CI | ACNGT | 1 cut(s) | 94 |
| BstACI | GRCGYC | 1 cut(s) | 64 |
| BstC8I | GCNNGC | 2 cut(s) | 302, 353 |
| BstEII | GGTNACC | 1 cut(s) | 110 |
| BstF5I | GGATG | 3 cut(s) | 54, 274, 321 |
| BstKTI | GATC | 1 cut(s) | 130 |
| BstMBI | GATC | 1 cut(s) | 127 |
| BstNSI | RCATGY | 1 cut(s) | 355 |
| BstPI | GGTNACC | 1 cut(s) | 110 |
| BstV2I | GAAGAC | 1 cut(s) | 375 |
| BsuRI | GGCC | 1 cut(s) | 225 |
| BtsCI | GGATG | 3 cut(s) | 54, 274, 321 |
| Cac8I | GCNNGC | 2 cut(s) | 302, 353 |
| CseI | GACGC | 1 cut(s) | 53 |
| Csp6I | GTAC | 1 cut(s) | 90 |
| CviAII | CATG | 4 cut(s) | 5, 39, 265, 352 |
| CviJI | RGCY | 3 cut(s) | 165, 173, 225 |
| CviKI_1 | RGCY | 3 cut(s) | 165, 173, 225 |
| CviQI | GTAC | 1 cut(s) | 90 |
| DpnI | GATC | 1 cut(s) | 129 |
| DpnII | GATC | 1 cut(s) | 127 |
| EaeI | YGGCCR | 1 cut(s) | 223 |
| Eco130I | CCWWGG | 1 cut(s) | 160 |
| Eco91I | GGTNACC | 1 cut(s) | 110 |
| EcoO65I | GGTNACC | 1 cut(s) | 110 |
| EcoT14I | CCWWGG | 1 cut(s) | 160 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| ErhI | CCWWGG | 1 cut(s) | 160 |
| FaeI | CATG | 4 cut(s) | 8, 42, 268, 355 |
| FaiI | YATR | 9 cut(s) | 6, 40, 124, 228, 230, 266, 306, 342, 353 |
| FatI | CATG | 4 cut(s) | 4, 38, 264, 351 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FbaI | TGATCA | 1 cut(s) | 127 |
| FokI | GGATG | 3 cut(s) | 61, 281, 328 |
| HaeIII | GGCC | 1 cut(s) | 225 |
| HgaI | GACGC | 1 cut(s) | 53 |
| Hin1I | GRCGYC | 1 cut(s) | 64 |
| Hin1II | CATG | 4 cut(s) | 8, 42, 268, 355 |
| HinfI | GANTC | 2 cut(s) | 251, 257 |
| HphI | GGTGA | 3 cut(s) | 122, 197, 277 |
| Hpy166II | GTNNAC | 1 cut(s) | 361 |
| Hpy188I | TCNGA | 1 cut(s) | 256 |
| Hpy188III | TCNNGA | 2 cut(s) | 28, 179 |
| Hpy8I | GTNNAC | 1 cut(s) | 361 |
| HpyAV | CCTTC | 4 cut(s) | 6, 46, 163, 176 |
| HpyCH4III | ACNGT | 1 cut(s) | 94 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 351 |
| Hsp92I | GRCGYC | 1 cut(s) | 64 |
| Hsp92II | CATG | 4 cut(s) | 8, 42, 268, 355 |
| Ksp22I | TGATCA | 1 cut(s) | 127 |
| Kzo9I | GATC | 1 cut(s) | 127 |
| LmnI | GCTCC | 1 cut(s) | 16 |
| LpnPI | CCDG | 5 cut(s) | 13, 175, 192, 301, 369 |
| MaeIII | GTNAC | 3 cut(s) | 98, 110, 185 |
| MalI | GATC | 1 cut(s) | 129 |
| MboI | GATC | 1 cut(s) | 127 |
| MboII | GAAGA | 2 cut(s) | 21, 375 |
| MfeI | CAATTG | 2 cut(s) | 58, 346 |
| MlsI | TGGCCA | 1 cut(s) | 225 |
| MluCI | AATT | 4 cut(s) | 58, 117, 216, 346 |
| MluNI | TGGCCA | 1 cut(s) | 225 |
| MlyI | GAGTC | 2 cut(s) | 260, 266 |
| Mox20I | TGGCCA | 1 cut(s) | 225 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MscI | TGGCCA | 1 cut(s) | 225 |
| MslI | CAYNNNNRTG | 2 cut(s) | 105, 356 |
| Msp20I | TGGCCA | 1 cut(s) | 225 |
| MunI | CAATTG | 2 cut(s) | 58, 346 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 1 cut(s) | 127 |
| NlaIII | CATG | 4 cut(s) | 8, 42, 268, 355 |
| NmuCI | GTSAC | 3 cut(s) | 98, 110, 185 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 1 cut(s) | 355 |
| OliI | CACNNNNGTG | 1 cut(s) | 105 |
| PaeI | GCATGC | 1 cut(s) | 355 |
| PleI | GAGTC | 2 cut(s) | 259, 265 |
| PpsI | GAGTC | 2 cut(s) | 259, 265 |
| PspEI | GGTNACC | 1 cut(s) | 110 |
| RsaI | GTAC | 1 cut(s) | 91 |
| RsaNI | GTAC | 1 cut(s) | 90 |
| RseI | CAYNNNNRTG | 2 cut(s) | 105, 356 |
| Sau3AI | GATC | 1 cut(s) | 127 |
| SchI | GAGTC | 2 cut(s) | 260, 266 |
| SetI | ASST | 3 cut(s) | 117, 187, 290 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 105, 356 |
| SphI | GCATGC | 1 cut(s) | 355 |
| Sse9I | AATT | 4 cut(s) | 58, 117, 216, 346 |
| StyI | CCWWGG | 1 cut(s) | 160 |
| TaaI | ACNGT | 1 cut(s) | 94 |
| TasI | AATT | 4 cut(s) | 58, 117, 216, 346 |
| TatI | WGTACW | 1 cut(s) | 89 |
| TseFI | GTSAC | 3 cut(s) | 98, 110, 185 |
| Tsp45I | GTSAC | 3 cut(s) | 98, 110, 185 |
| TspDTI | ATGAA | 4 cut(s) | 65, 189, 245, 322 |
| XapI | RAATTY | 1 cut(s) | 216 |
| XceI | RCATGY | 1 cut(s) | 355 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 186 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |