Rw6G042360

Acyl-CoA N-acyltransferase with RING FYVE PHD-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0003679
Physical Location & Seq
Forward (+)
65850686 .. 65851756
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G042360.1

Sequence Viewer

Length: 1071 bp
ATGAGGTCTAGTGATGATGAGAACCATGATGAGTGCAGTGTGTGTTGCTATGGAGGGGAATTGGTTCTCTGTGATGGATGTCCCTCTGCTTATCATGCTGGCTGCATTGGTTTGGGTGAGGTGGGAGATGGTGATTGGTTCTGCCCATCTTGCTGCTGTGGGTTTTGCAACTTAGGAATATTGGAGGATGATGGTGTTGCCTCATGTGACCAATGCAGGCAGAGGTACCACATTGGGTGTGCAAGAAATTCAGGGGAGGCTAAGTTGGGTGTGGATGGGAAATTGTTTTGCAGTAGGAAATGTGAAAATGTGTGTCTGGGAATCAACAAGATTTTGGGGAAGGCTATTGTGGTTGGTCCTGATAATCTTACTTGGACTTTGCTCAAGTCCTCCTCAACTTGTGATGTCGACAACTTGACCAGGAATTACAGACAGCACAAATTGGCTGTGGAGGTGATGCATGAGTGTTTTGAGCCTACTCAGGACCCCTACACGAGAAGTGATGTGGTTGATGATGTGATTTTTAATAGGCAGAAGAAGTTTCGAGGGTTTTATACCGCGGTTTTGGAGAGGAATGAGGAGGTGATTAGCGCAGCTACGGTGAGGGTTTACAGTGAGCTGGGGGAAGTGCCGCTAGTGGCGACTAAGTTTAAGCACCGGAGACTTGGGATGTGTCGGATTTTGATGAGTGAGCTTGAGAAACAGCTTGTGAAGTTGGGAATTGGGAAGCTGGTTTTGCCTTCTGCTAAAGATGCACTGGAGGCATGGACTGGTACCTCACTTGGGTTTTCAAAGATGACTGCTGACGAAACATTACCATTGTTGAAGTATAGATTCTGGAATTTCCAAGACACTACCATGTGTCACAAGGTATTGAAGAAGCAGACGACTAGTACTGAATCTGATGGGTCTGCTGGTGCCATTTCTACAGTAACGCAAGTAGGGGACATTGATGCAAGTGAAGAGGCTTGCATTATGGATATTGATTATGATTATGATTTCATGTTGGAGGATGACTCTAAATTCTTGTCATGGTACAAATCTGGATCTAAAAAGATTGTGGCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140096 GO:0140097 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 Agenet Jas PHD

Protein Analysis

356

Amino Acids

39.46

Weight (kDa)

5.15

Isoelectric Point (pI)

38.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 12 - 51 2e-06 PHD-finger
IDM1_C PF23209 157 - 290 1.4e-40 Increased DNA methylation 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 225, 773
AccB1I GGYRCC 3 cut(s) 225, 773, 917
AccI GTMKAC 1 cut(s) 408
AccII CGCG 1 cut(s) 560
AciI CCGC 3 cut(s) 558, 560, 632
AclWI GGATC 1 cut(s) 1054
AcsI RAATTY 3 cut(s) 247, 841, 1022
AfaI GTAC 4 cut(s) 227, 775, 895, 1037
AfiI CCNNNNNNNGG 1 cut(s) 783
AgsI TTSAA 3 cut(s) 792, 826, 877
AhlI ACTAGT 1 cut(s) 890
AjnI CCWGG 1 cut(s) 419
AluBI AGCT 5 cut(s) 596, 619, 694, 706, 730
AluI AGCT 5 cut(s) 596, 619, 694, 706, 730
Alw26I GTCTC 1 cut(s) 655
AlwI GGATC 1 cut(s) 1054
ApeKI GCWGC 3 cut(s) 102, 153, 593
ApoI RAATTY 3 cut(s) 247, 841, 1022
Asp700I GAANNNNTTC 1 cut(s) 63
Asp718I GGTACC 2 cut(s) 225, 773
AspLEI GCGC 1 cut(s) 593
AspS9I GGNCC 2 cut(s) 356, 484
AsuHPI GGTGA 5 cut(s) 128, 143, 466, 595, 613
AvaII GGWCC 2 cut(s) 356, 484
BanI GGYRCC 3 cut(s) 225, 773, 917
BauI CACGAG 1 cut(s) 493
BbvI GCAGC 3 cut(s) 89, 140, 605
BccI CCATC 6 cut(s) 68, 122, 154, 185, 269, 899
BciT130I CCWGG 1 cut(s) 421
BcoDI GTCTC 1 cut(s) 655
BcuI ACTAGT 1 cut(s) 890
BfaI CTAG 3 cut(s) 9, 635, 891
BfmI CTRYAG 1 cut(s) 927
BisI GCNGC 4 cut(s) 103, 154, 594, 632
BlsI GCNGC 4 cut(s) 104, 155, 595, 633
BmcAI AGTACT 1 cut(s) 895
Bme1390I CCNGG 1 cut(s) 421
Bme18I GGWCC 2 cut(s) 356, 484
BmgT120I GGNCC 2 cut(s) 356, 484
BmiI GGNNCC 4 cut(s) 227, 486, 775, 919
BmrFI CCNGG 1 cut(s) 421
BmsI GCATC 3 cut(s) 447, 742, 943
BplI GAGNNNNNCTC 2 cut(s) 1001, 1033
BpmI CTGGAG 1 cut(s) 779
BpuEI CTTGAG 2 cut(s) 368, 716
BsaJI CCNNGG 1 cut(s) 558
BsaWI WCCGGW 1 cut(s) 657
BsaXI ACNNNNNCTCC 2 cut(s) 248, 278
Bsc4I CCNNNNNNNGG 1 cut(s) 783
Bse1I ACTGG 2 cut(s) 762, 775
BseBI CCWGG 1 cut(s) 421
BseDI CCNNGG 1 cut(s) 558
BseGI GGATG 5 cut(s) 83, 193, 280, 675, 1018
BseLI CCNNNNNNNGG 1 cut(s) 783
BseMII CTCAG 1 cut(s) 494
BseNI ACTGG 2 cut(s) 762, 775
BseRI GAGGAG 2 cut(s) 382, 593
BseXI GCAGC 3 cut(s) 89, 140, 605
BseYI CCCAGC 1 cut(s) 619
BsgI GTGCAG 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 560
BshNI GGYRCC 3 cut(s) 225, 773, 917
BsiSI CCGG 1 cut(s) 658
BslFI GGGAC 2 cut(s) 66, 959
BslI CCNNNNNNNGG 1 cut(s) 783
BsmAI GTCTC 1 cut(s) 655
BsmFI GGGAC 2 cut(s) 66, 959
Bsp143I GATC 1 cut(s) 1046
BspACI CCGC 3 cut(s) 558, 560, 632
BspCNI CTCAG 1 cut(s) 493
BspFNI CGCG 1 cut(s) 560
BspLI GGNNCC 4 cut(s) 227, 486, 775, 919
BspPI GGATC 1 cut(s) 1054
BspT107I GGYRCC 3 cut(s) 225, 773, 917
BsrI ACTGG 2 cut(s) 762, 775
BssECI CCNNGG 1 cut(s) 558
BssMI GATC 1 cut(s) 1046
BssSI CACGAG 1 cut(s) 493
Bst2BI CACGAG 1 cut(s) 493
Bst2UI CCWGG 1 cut(s) 421
Bst4CI ACNGT 3 cut(s) 601, 614, 931
Bst6I CTCTTC 1 cut(s) 957
BstC8I GCNNGC 3 cut(s) 100, 218, 970
BstDEI CTNAG 4 cut(s) 172, 261, 480, 645
BstDSI CCRYGG 1 cut(s) 558
BstF5I GGATG 5 cut(s) 83, 193, 280, 675, 1018
BstFNI CGCG 1 cut(s) 560
BstHHI GCGC 1 cut(s) 593
BstKTI GATC 1 cut(s) 1049
BstMAI GTCTC 1 cut(s) 655
BstMBI GATC 1 cut(s) 1046
BstMWI GCNNNNNNNGC 5 cut(s) 95, 150, 736, 752, 761
BstNI CCWGG 1 cut(s) 421
BstSCI CCNGG 1 cut(s) 419
BstSFI CTRYAG 1 cut(s) 927
BstUI CGCG 1 cut(s) 560
BstV1I GCAGC 3 cut(s) 89, 140, 605
BstX2I RGATCY 1 cut(s) 1046
BstYI RGATCY 1 cut(s) 1046
BtgI CCRYGG 1 cut(s) 558
BtsCI GGATG 5 cut(s) 83, 193, 280, 675, 1018
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 3 cut(s) 43, 619, 755
Cac8I GCNNGC 3 cut(s) 100, 218, 970
CfoI GCGC 1 cut(s) 593
Cfr13I GGNCC 2 cut(s) 356, 484
Cfr42I CCGCGG 1 cut(s) 561
Csp6I GTAC 4 cut(s) 226, 774, 894, 1036
CviAII CATG 8 cut(s) 26, 95, 204, 461, 765, 859, 1003, 1032
CviQI GTAC 4 cut(s) 226, 774, 894, 1036
DdeI CTNAG 4 cut(s) 172, 261, 480, 645
DpnI GATC 1 cut(s) 1048
DpnII GATC 1 cut(s) 1046
Eam1104I CTCTTC 1 cut(s) 957
EarI CTCTTC 1 cut(s) 957
Eco47I GGWCC 2 cut(s) 356, 484
EcoO109I RGGNCCY 1 cut(s) 484
EcoRII CCWGG 1 cut(s) 419
EcoT22I ATGCAT 1 cut(s) 462
FaeI CATG 8 cut(s) 29, 98, 207, 464, 768, 862, 1006, 1035
FaqI GGGAC 2 cut(s) 66, 959
FatI CATG 8 cut(s) 25, 94, 203, 460, 764, 858, 1002, 1031
FblI GTMKAC 1 cut(s) 408
Fnu4HI GCNGC 4 cut(s) 103, 154, 594, 632
FokI GGATG 5 cut(s) 90, 200, 287, 682, 1025
Fsp4HI GCNGC 4 cut(s) 103, 154, 594, 632
FspBI CTAG 3 cut(s) 9, 635, 891
GlaI GCGC 1 cut(s) 592
GluI GCNGC 4 cut(s) 103, 154, 594, 632
GsaI CCCAGC 1 cut(s) 623
GsuI CTGGAG 1 cut(s) 779
HapII CCGG 1 cut(s) 658
HhaI GCGC 1 cut(s) 593
Hin1II CATG 8 cut(s) 29, 98, 207, 464, 768, 862, 1006, 1035
Hin6I GCGC 1 cut(s) 591
HinP1I GCGC 1 cut(s) 591
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HinfI GANTC 4 cut(s) 321, 834, 899, 1016
HpaII CCGG 1 cut(s) 658
HphI GGTGA 5 cut(s) 128, 143, 466, 595, 613
Hpy166II GTNNAC 2 cut(s) 409, 610
Hpy188I TCNGA 2 cut(s) 678, 904
Hpy188III TCNNGA 4 cut(s) 359, 482, 838, 1044
Hpy8I GTNNAC 2 cut(s) 409, 610
HpyAV CCTTC 2 cut(s) 334, 750
HpyCH4III ACNGT 3 cut(s) 601, 614, 931
HpyF10VI GCNNNNNNNGC 5 cut(s) 95, 150, 736, 752, 761
HpyF3I CTNAG 4 cut(s) 172, 261, 480, 645
Hsp92II CATG 8 cut(s) 29, 98, 207, 464, 768, 862, 1006, 1035
HspAI GCGC 1 cut(s) 591
KpnI GGTACC 2 cut(s) 229, 777
KspI CCGCGG 1 cut(s) 561
Kzo9I GATC 1 cut(s) 1046
Lsp1109I GCAGC 3 cut(s) 89, 140, 605
LweI GCATC 3 cut(s) 447, 742, 943
MaeI CTAG 3 cut(s) 9, 635, 891
MaeIII GTNAC 3 cut(s) 206, 863, 931
MalI GATC 1 cut(s) 1048
MboI GATC 1 cut(s) 1046
MboII GAAGA 3 cut(s) 547, 889, 974
MflI RGATCY 1 cut(s) 1046
MluCI AATT 8 cut(s) 59, 247, 281, 424, 440, 720, 841, 1022
MlyI GAGTC 1 cut(s) 1010
MmeI TCCRAC 2 cut(s) 656, 987
Mph1103I ATGCAT 1 cut(s) 462
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 2 cut(s) 525, 651
MslI CAYNNNNRTG 1 cut(s) 857
MspA1I CMGCKG 1 cut(s) 560
MspI CCGG 1 cut(s) 658
MspR9I CCNGG 1 cut(s) 421
MvaI CCWGG 1 cut(s) 421
MvnI CGCG 1 cut(s) 560
MwoI GCNNNNNNNGC 5 cut(s) 95, 150, 736, 752, 761
NdeII GATC 1 cut(s) 1046
NlaIII CATG 8 cut(s) 29, 98, 207, 464, 768, 862, 1006, 1035
NlaIV GGNNCC 4 cut(s) 227, 486, 775, 919
NmuCI GTSAC 2 cut(s) 206, 863
NsiI ATGCAT 1 cut(s) 462
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 3 cut(s) 321, 834, 899
PkrI GCNGC 4 cut(s) 104, 155, 595, 633
PleI GAGTC 1 cut(s) 1010
PpsI GAGTC 1 cut(s) 1010
PpuMI RGGWCCY 1 cut(s) 484
Psp5II RGGWCCY 1 cut(s) 484
Psp6I CCWGG 1 cut(s) 419
PspFI CCCAGC 1 cut(s) 619
PspGI CCWGG 1 cut(s) 419
PspN4I GGNNCC 4 cut(s) 227, 486, 775, 919
PspPI GGNCC 2 cut(s) 356, 484
PspPPI RGGWCCY 1 cut(s) 484
PsuI RGATCY 1 cut(s) 1046
RsaI GTAC 4 cut(s) 227, 775, 895, 1037
RsaNI GTAC 4 cut(s) 226, 774, 894, 1036
RseI CAYNNNNRTG 1 cut(s) 857
SacII CCGCGG 1 cut(s) 561
SalI GTCGAC 1 cut(s) 407
SaqAI TTAA 2 cut(s) 525, 651
SatI GCNGC 4 cut(s) 103, 154, 594, 632
Sau3AI GATC 1 cut(s) 1046
Sau96I GGNCC 2 cut(s) 356, 484
ScaI AGTACT 1 cut(s) 895
SchI GAGTC 1 cut(s) 1010
ScrFI CCNGG 1 cut(s) 421
SfaNI GCATC 3 cut(s) 447, 742, 943
SfcI CTRYAG 1 cut(s) 927
Sfr303I CCGCGG 1 cut(s) 561
SgrBI CCGCGG 1 cut(s) 561
SinI GGWCC 2 cut(s) 356, 484
SmiMI CAYNNNNRTG 1 cut(s) 857
SmlI CTYRAG 2 cut(s) 383, 695
SmoI CTYRAG 2 cut(s) 383, 695
SpeI ACTAGT 1 cut(s) 890
Sse9I AATT 8 cut(s) 59, 247, 281, 424, 440, 720, 841, 1022
SsiI CCGC 3 cut(s) 558, 560, 632
SspI AATATT 1 cut(s) 180
SspMI CTAG 3 cut(s) 9, 635, 891
StyD4I CCNGG 1 cut(s) 419
TaaI ACNGT 3 cut(s) 601, 614, 931
TaqI TCGA 2 cut(s) 408, 544
TasI AATT 8 cut(s) 59, 247, 281, 424, 440, 720, 841, 1022
TatI WGTACW 1 cut(s) 893
TauI GCSGC 1 cut(s) 634
TfiI GAWTC 3 cut(s) 321, 834, 899
Tru1I TTAA 2 cut(s) 525, 651
Tru9I TTAA 2 cut(s) 525, 651
TscAI CASTG 3 cut(s) 43, 619, 762
TseFI GTSAC 2 cut(s) 206, 863
TseI GCWGC 3 cut(s) 102, 153, 593
Tsp45I GTSAC 2 cut(s) 206, 863
TspDTI ATGAA 1 cut(s) 991
TspRI CASTG 3 cut(s) 43, 619, 762
VpaK11BI GGWCC 2 cut(s) 356, 484
XapI RAATTY 3 cut(s) 247, 841, 1022
XmiI GTMKAC 1 cut(s) 408
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 3 cut(s) 9, 635, 891
ZrmI AGTACT 1 cut(s) 895
Zsp2I ATGCAT 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.