Rmu_sc0024715.1_g000002

Acyl-CoA N-acyltransferase with RING FYVE PHD-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024715.1
OG0003679
Physical Location & Seq
Reverse (-)
5580 .. 6881
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024715.1_g000002.1.cds

Sequence Viewer

Length: 1302 bp
cctaccactctagcagtgatacaagtcgtttgtgccctttgtgagcctgttgttgacgccggtgacttggcagtagtactagtacctcctcctgaaaagcccaagagatcatcaaggaggaagcttgattcaataggggagccggttcggaatccgaaaccgaaaagaggcaaggttcttgcggatttgaagagagttagagatgaaaaggagaggaatagggatgtcgagatgaggtctagtgatgatgagaaccatgatgagtgcagtgtgtgttgctatggaggggaattggttctctgtgatggatgtccctctgcttttcatgctggctgcattggtttgggtgaggtgggagatggtgattggttctgcccatcttgctgctgtgggttttgcaacttaggaatattggaggatgatggtgttgcctcatgtgaccaatgcaggcagaggtaccacattgggtgtgcaagaaattcaggggaggctaagttgggtgtggatgggaaattgttttgcagtaggaaatgtgaaaatgtgtgtctgggaatcaacaagattttggggaaggctattgtggttggtcctgataatcttacttggactttgctcaagtcctcctcaacttgtgatgtcgacaacttgaccaggaattacagacagcacaaattggctgtggaggtgatgcatgagtgttttgagccgactcaggacccctacacgagaagtgatgtggttgatgatgtgatttttaataggcagaagaagtttcgagggttttatactgcggttttggagaggaatgaggaggtgattagcgcagctacagtgagggtttacagtgagctgggggaagtgccgctagtggcgactaagtttaagcaccggagacttgggatgtgtcgaattttgatgagtgagcttgagaaacagcttgtgaaattgggaattgagaagctggttttgccttctgctaaagatgcactggaggcatggactggtacctcacttgggttttcaaagatgactgctgacgaaacattaccattgttgaagtatagattctggaatttccaagacactaccatgtgtcacaaggtattgaagaagcagacgactagtactgaatctgatgggtctgctggtgccatttctacagtaacgcaaataggggacattgttgcaagtgaagaggcttgcattatggatattgattatgattatgatttcatgttggaggatgactctaaattcttgtcatggtacaaatgtggatctaaaaagattgtggctctctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140096 GO:0140097 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 Agenet Jas PHD

Protein Analysis

433

Amino Acids

48.06

Weight (kDa)

5.69

Isoelectric Point (pI)

41.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 456, 1004
AccB1I GGYRCC 3 cut(s) 456, 1004, 1148
AccI GTMKAC 1 cut(s) 639
AciI CCGC 3 cut(s) 182, 791, 863
AclWI GGATC 1 cut(s) 1285
AcsI RAATTY 4 cut(s) 478, 909, 1072, 1253
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 6 cut(s) 78, 84, 458, 1006, 1126, 1268
AfiI CCNNNNNNNGG 2 cut(s) 167, 1014
AgsI TTSAA 5 cut(s) 132, 190, 1023, 1057, 1108
AhlI ACTAGT 2 cut(s) 79, 1121
AjnI CCWGG 1 cut(s) 650
AluBI AGCT 6 cut(s) 124, 827, 850, 925, 937, 961
AluI AGCT 6 cut(s) 124, 827, 850, 925, 937, 961
Alw26I GTCTC 1 cut(s) 886
AlwI GGATC 1 cut(s) 1285
ApeKI GCWGC 3 cut(s) 333, 384, 824
ApoI RAATTY 4 cut(s) 478, 909, 1072, 1253
Asp700I GAANNNNTTC 1 cut(s) 294
Asp718I GGTACC 2 cut(s) 456, 1004
AspLEI GCGC 1 cut(s) 824
AspS9I GGNCC 2 cut(s) 587, 715
AsuHPI GGTGA 5 cut(s) 74, 359, 374, 697, 826
AvaII GGWCC 2 cut(s) 587, 715
BaeGI GKGCMC 1 cut(s) 37
BaeI ACNNNNGTAYC 2 cut(s) 1258, 1291
BanI GGYRCC 3 cut(s) 456, 1004, 1148
BauI CACGAG 1 cut(s) 724
BbvI GCAGC 3 cut(s) 320, 371, 836
BccI CCATC 6 cut(s) 299, 353, 385, 416, 500, 1130
BciT130I CCWGG 1 cut(s) 652
BcoDI GTCTC 1 cut(s) 886
BcuI ACTAGT 2 cut(s) 79, 1121
BfaI CTAG 5 cut(s) 11, 80, 240, 866, 1122
BfmI CTRYAG 2 cut(s) 828, 1158
BisI GCNGC 4 cut(s) 334, 385, 825, 863
BlsI GCNGC 4 cut(s) 335, 386, 826, 864
BmcAI AGTACT 2 cut(s) 78, 1126
Bme1390I CCNGG 1 cut(s) 652
Bme18I GGWCC 2 cut(s) 587, 715
BmgT120I GGNCC 2 cut(s) 587, 715
BmiI GGNNCC 5 cut(s) 141, 458, 717, 1006, 1150
BmrFI CCNGG 1 cut(s) 652
BmsI GCATC 2 cut(s) 678, 973
BplI GAGNNNNNCTC 2 cut(s) 1232, 1264
BpmI CTGGAG 1 cut(s) 1010
BpuEI CTTGAG 2 cut(s) 599, 947
BsaHI GRCGYC 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 888
BsaXI ACNNNNNCTCC 2 cut(s) 479, 509
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 1014
Bse118I RCCGGY 2 cut(s) 59, 142
Bse1I ACTGG 2 cut(s) 993, 1006
BseBI CCWGG 1 cut(s) 652
BseGI GGATG 6 cut(s) 229, 314, 424, 511, 906, 1249
BseLI CCNNNNNNNGG 2 cut(s) 167, 1014
BseMII CTCAG 1 cut(s) 725
BseNI ACTGG 2 cut(s) 993, 1006
BseRI GAGGAG 3 cut(s) 78, 613, 824
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 3 cut(s) 320, 371, 836
BseYI CCCAGC 1 cut(s) 850
BsgI GTGCAG 1 cut(s) 286
BshNI GGYRCC 3 cut(s) 456, 1004, 1148
BsiSI CCGG 3 cut(s) 60, 143, 889
BslFI GGGAC 2 cut(s) 297, 1190
BslI CCNNNNNNNGG 2 cut(s) 167, 1014
BsmAI GTCTC 1 cut(s) 886
BsmFI GGGAC 2 cut(s) 297, 1190
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 2 cut(s) 107, 1277
BspACI CCGC 3 cut(s) 182, 791, 863
BspCNI CTCAG 1 cut(s) 724
BspLI GGNNCC 5 cut(s) 141, 458, 717, 1006, 1150
BspPI GGATC 1 cut(s) 1285
BspT107I GGYRCC 3 cut(s) 456, 1004, 1148
BsrFI RCCGGY 2 cut(s) 59, 142
BsrI ACTGG 2 cut(s) 993, 1006
BssAI RCCGGY 2 cut(s) 59, 142
BssMI GATC 2 cut(s) 107, 1277
BssNI GRCGYC 1 cut(s) 57
BssSI CACGAG 1 cut(s) 724
Bst2BI CACGAG 1 cut(s) 724
Bst2UI CCWGG 1 cut(s) 652
Bst4CI ACNGT 3 cut(s) 832, 845, 1162
Bst6I CTCTTC 2 cut(s) 185, 1188
BstACI GRCGYC 1 cut(s) 57
BstC8I GCNNGC 3 cut(s) 331, 449, 1201
BstDEI CTNAG 4 cut(s) 403, 492, 711, 876
BstF5I GGATG 6 cut(s) 229, 314, 424, 511, 906, 1249
BstHHI GCGC 1 cut(s) 824
BstKTI GATC 2 cut(s) 110, 1280
BstMAI GTCTC 1 cut(s) 886
BstMBI GATC 2 cut(s) 107, 1277
BstMWI GCNNNNNNNGC 5 cut(s) 326, 381, 967, 983, 992
BstNI CCWGG 1 cut(s) 652
BstSCI CCNGG 1 cut(s) 650
BstSFI CTRYAG 2 cut(s) 828, 1158
BstSLI GKGCMC 1 cut(s) 37
BstV1I GCAGC 3 cut(s) 320, 371, 836
BstX2I RGATCY 1 cut(s) 1277
BstYI RGATCY 1 cut(s) 1277
BtsCI GGATG 6 cut(s) 229, 314, 424, 511, 906, 1249
BtsI GCAGTG 2 cut(s) 21, 274
BtsIMutI CAGTG 5 cut(s) 21, 274, 837, 850, 986
Cac8I GCNNGC 3 cut(s) 331, 449, 1201
CfoI GCGC 1 cut(s) 824
Cfr10I RCCGGY 2 cut(s) 59, 142
Cfr13I GGNCC 2 cut(s) 587, 715
CseI GACGC 1 cut(s) 65
Csp6I GTAC 6 cut(s) 77, 83, 457, 1005, 1125, 1267
CviAII CATG 8 cut(s) 257, 326, 435, 692, 996, 1090, 1234, 1263
CviQI GTAC 6 cut(s) 77, 83, 457, 1005, 1125, 1267
DdeI CTNAG 4 cut(s) 403, 492, 711, 876
DpnI GATC 2 cut(s) 109, 1279
DpnII GATC 2 cut(s) 107, 1277
Eam1104I CTCTTC 2 cut(s) 185, 1188
EarI CTCTTC 2 cut(s) 185, 1188
Eco47I GGWCC 2 cut(s) 587, 715
EcoO109I RGGNCCY 1 cut(s) 715
EcoRII CCWGG 1 cut(s) 650
EcoT22I ATGCAT 1 cut(s) 693
FaeI CATG 8 cut(s) 260, 329, 438, 695, 999, 1093, 1237, 1266
FaqI GGGAC 2 cut(s) 297, 1190
FatI CATG 8 cut(s) 256, 325, 434, 691, 995, 1089, 1233, 1262
FblI GTMKAC 1 cut(s) 639
Fnu4HI GCNGC 4 cut(s) 334, 385, 825, 863
FokI GGATG 6 cut(s) 236, 321, 431, 518, 913, 1256
Fsp4HI GCNGC 4 cut(s) 334, 385, 825, 863
FspBI CTAG 5 cut(s) 11, 80, 240, 866, 1122
GlaI GCGC 1 cut(s) 823
GluI GCNGC 4 cut(s) 334, 385, 825, 863
GsaI CCCAGC 1 cut(s) 854
GsuI CTGGAG 1 cut(s) 1010
HapII CCGG 3 cut(s) 60, 143, 889
HgaI GACGC 1 cut(s) 65
HhaI GCGC 1 cut(s) 824
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 8 cut(s) 260, 329, 438, 695, 999, 1093, 1237, 1266
Hin6I GCGC 1 cut(s) 822
HinP1I GCGC 1 cut(s) 822
HincII GTYRAC 2 cut(s) 55, 640
HindII GTYRAC 2 cut(s) 55, 640
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 7 cut(s) 128, 151, 552, 709, 1065, 1130, 1247
HpaII CCGG 3 cut(s) 60, 143, 889
HphI GGTGA 5 cut(s) 74, 359, 374, 697, 826
Hpy166II GTNNAC 3 cut(s) 55, 640, 841
Hpy188I TCNGA 3 cut(s) 150, 156, 1135
Hpy188III TCNNGA 5 cut(s) 92, 229, 590, 713, 1069
Hpy8I GTNNAC 3 cut(s) 55, 640, 841
HpyAV CCTTC 2 cut(s) 565, 981
HpyCH4III ACNGT 3 cut(s) 832, 845, 1162
HpyF10VI GCNNNNNNNGC 5 cut(s) 326, 381, 967, 983, 992
HpyF3I CTNAG 4 cut(s) 403, 492, 711, 876
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 8 cut(s) 260, 329, 438, 695, 999, 1093, 1237, 1266
HspAI GCGC 1 cut(s) 822
KpnI GGTACC 2 cut(s) 460, 1008
Kzo9I GATC 2 cut(s) 107, 1277
LmnI GCTCC 1 cut(s) 139
Lsp1109I GCAGC 3 cut(s) 320, 371, 836
LweI GCATC 2 cut(s) 678, 973
MaeI CTAG 5 cut(s) 11, 80, 240, 866, 1122
MaeIII GTNAC 4 cut(s) 62, 437, 1094, 1162
MalI GATC 2 cut(s) 109, 1279
MboI GATC 2 cut(s) 107, 1277
MboII GAAGA 4 cut(s) 202, 778, 1120, 1205
MflI RGATCY 1 cut(s) 1277
MhlI GDGCHC 1 cut(s) 37
MlyI GAGTC 2 cut(s) 703, 1241
MmeI TCCRAC 1 cut(s) 1218
Mph1103I ATGCAT 1 cut(s) 693
MroXI GAANNNNTTC 1 cut(s) 294
MseI TTAA 2 cut(s) 756, 882
MslI CAYNNNNRTG 1 cut(s) 1088
MspI CCGG 3 cut(s) 60, 143, 889
MspR9I CCNGG 1 cut(s) 652
MvaI CCWGG 1 cut(s) 652
MwoI GCNNNNNNNGC 5 cut(s) 326, 381, 967, 983, 992
NdeII GATC 2 cut(s) 107, 1277
NlaIII CATG 8 cut(s) 260, 329, 438, 695, 999, 1093, 1237, 1266
NlaIV GGNNCC 5 cut(s) 141, 458, 717, 1006, 1150
NmuCI GTSAC 3 cut(s) 62, 437, 1094
NsiI ATGCAT 1 cut(s) 693
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 5 cut(s) 128, 151, 552, 1065, 1130
PkrI GCNGC 4 cut(s) 335, 386, 826, 864
PleI GAGTC 2 cut(s) 703, 1241
PpsI GAGTC 2 cut(s) 703, 1241
PpuMI RGGWCCY 1 cut(s) 715
Psp5II RGGWCCY 1 cut(s) 715
Psp6I CCWGG 1 cut(s) 650
PspFI CCCAGC 1 cut(s) 850
PspGI CCWGG 1 cut(s) 650
PspN4I GGNNCC 5 cut(s) 141, 458, 717, 1006, 1150
PspPI GGNCC 2 cut(s) 587, 715
PspPPI RGGWCCY 1 cut(s) 715
PsuI RGATCY 1 cut(s) 1277
RsaI GTAC 6 cut(s) 78, 84, 458, 1006, 1126, 1268
RsaNI GTAC 6 cut(s) 77, 83, 457, 1005, 1125, 1267
RseI CAYNNNNRTG 1 cut(s) 1088
SalI GTCGAC 1 cut(s) 638
SaqAI TTAA 2 cut(s) 756, 882
SatI GCNGC 4 cut(s) 334, 385, 825, 863
Sau3AI GATC 2 cut(s) 107, 1277
Sau96I GGNCC 2 cut(s) 587, 715
ScaI AGTACT 2 cut(s) 78, 1126
SchI GAGTC 2 cut(s) 703, 1241
ScrFI CCNGG 1 cut(s) 652
SduI GDGCHC 1 cut(s) 37
SfaNI GCATC 2 cut(s) 678, 973
SfcI CTRYAG 2 cut(s) 828, 1158
SgrAI CRCCGGYG 1 cut(s) 59
SinI GGWCC 2 cut(s) 587, 715
SmiMI CAYNNNNRTG 1 cut(s) 1088
SmlI CTYRAG 2 cut(s) 614, 926
SmoI CTYRAG 2 cut(s) 614, 926
SpeI ACTAGT 2 cut(s) 79, 1121
SsiI CCGC 3 cut(s) 182, 791, 863
SspI AATATT 1 cut(s) 411
SspMI CTAG 5 cut(s) 11, 80, 240, 866, 1122
StyD4I CCNGG 1 cut(s) 650
TaaI ACNGT 3 cut(s) 832, 845, 1162
TaqI TCGA 4 cut(s) 228, 639, 775, 907
TatI WGTACW 2 cut(s) 76, 1124
TauI GCSGC 1 cut(s) 865
TfiI GAWTC 5 cut(s) 128, 151, 552, 1065, 1130
Tru1I TTAA 2 cut(s) 756, 882
Tru9I TTAA 2 cut(s) 756, 882
TscAI CASTG 5 cut(s) 21, 274, 837, 850, 993
TseFI GTSAC 3 cut(s) 62, 437, 1094
TseI GCWGC 3 cut(s) 333, 384, 824
Tsp45I GTSAC 3 cut(s) 62, 437, 1094
TspDTI ATGAA 3 cut(s) 219, 314, 1222
TspRI CASTG 5 cut(s) 21, 274, 837, 850, 993
VpaK11BI GGWCC 2 cut(s) 587, 715
XapI RAATTY 4 cut(s) 478, 909, 1072, 1253
XmiI GTMKAC 1 cut(s) 639
XmnI GAANNNNTTC 1 cut(s) 294
XspI CTAG 5 cut(s) 11, 80, 240, 866, 1122
ZrmI AGTACT 2 cut(s) 78, 1126
Zsp2I ATGCAT 1 cut(s) 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.