Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8455997.1

Orthogroup ID

OG0003679

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1770

Gene Structure 1770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8455997.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

cgttgctgtgcaaggatcacacagcggcattgttgaagatgacagagttgcaagaggcggcgcgatggtgctcatggatgctggcggctccttttcctttggacgccttggacctaatctgctgacagagttcctaatgcctgatggtttcggcgaagaaatcaagatgaagaagaagaagaagaacgactctgttcctccccctctcattgtgaaaccccgattatgccccaaagcaattctcgaatggtccaacaccaccggcaagatcggccgctccgatttgaccgaaaaggccagagctcacctctccgcattgggctggaaattttggtacaaaaacaagtccaacaacaggatggagttgcgctacgaatctcccaccggaaaagtcttctactctctccgagcggcctgcaaggcctgcgttgaagaaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140096 GO:0140097 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1 Acetyltransf_10 Agenet Jas PHD

Protein Analysis

145

Amino Acids

16.06

Weight (kDa)

9.54

Isoelectric Point (pI)

41.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63900
fragaria_vesca	FvH4_2g33101 FvH4_2g33110
malus_domestica	MD03G1066400.v1.1 MD08G1084100.v1.1 MD15G1070200.v1.1
prunus_persica	Prupe.1G423000_v2.0.a1
pyrus_communis	pycom08g06970
rosa_chinensis	RchiOBHm_Chr6g0309551 RchiOBHm_Chr6g0309571
rosa_laevigata	RLG00000010552 RLG00000010554
rosa_multiflora	Rmu_co8092108.1_g000001 Rmu_co8455997.1_g000001 Rmu_co8522085.1_g000002 Rmu_sc0007283.1_g000012 Rmu_sc0007283.1_g000014 Rmu_sc0024715.1_g000002 Rmu_sc0024715.1_g000003 Rmu_sc0030536.1_g000004 Rmu_sc0042371.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159310
rosa_rugosa	Rorug06G0372800 Rorug06G0372900
rosa_samantha	Rh6AG486200 Rh6AG486400 Rh6BG204300 Rh6BG495600 Rh6BG495800 Rh6CG500600 Rh6CG500700 Rh6DG486500 Rh6DG486600
rosa_wichuraiana	Rw6G042350 Rw6G042360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	277, 411
AccII	CGCG	1 cut(s)	63
AciI	CCGC	6 cut(s)	25, 58, 85, 275, 313, 411
AclWI	GGATC	1 cut(s)	23
AcoI	YGGCCR	1 cut(s)	272
AcsI	RAATTY	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	104
AfaI	GTAC	1 cut(s)	336
AfiI	CCNNNNNNNGG	1 cut(s)	355
AgsI	TTSAA	2 cut(s)	36, 432
AluBI	AGCT	1 cut(s)	303
AluI	AGCT	1 cut(s)	303
Alw21I	GWGCWC	2 cut(s)	73, 305
AlwI	GGATC	1 cut(s)	23
AoxI	GGCC	4 cut(s)	272, 295, 412, 421
ApoI	RAATTY	1 cut(s)	327
AspLEI	GCGC	2 cut(s)	63, 370
AspS9I	GGNCC	2 cut(s)	111, 250
AsuHPI	GGTGA	1 cut(s)	297
AvaII	GGWCC	2 cut(s)	111, 250
BanII	GRGCYC	1 cut(s)	305
BbsI	GAAGAC	1 cut(s)	386
Bbv12I	GWGCWC	2 cut(s)	73, 305
BccI	CCATC	3 cut(s)	59, 138, 353
BcgI	CGANNNNNNTGC	2 cut(s)	397, 431
BglI	GCCNNNNNGGC	1 cut(s)	420
BisI	GCNGC	5 cut(s)	26, 59, 86, 275, 412
BlsI	GCNGC	5 cut(s)	27, 60, 87, 276, 413
Bme18I	GGWCC	2 cut(s)	111, 250
BmgT120I	GGNCC	2 cut(s)	111, 250
BmiI	GGNNCC	1 cut(s)	89
BmsI	GCATC	1 cut(s)	68
BpiI	GAAGAC	1 cut(s)	386
BplI	GAGNNNNNCTC	2 cut(s)	292, 324
BsaHI	GRCGYC	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	107
BsaWI	WCCGGW	1 cut(s)	384
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse118I	RCCGGY	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	107
BseGI	GGATG	2 cut(s)	83, 364
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseX3I	CGGCCG	1 cut(s)	272
Bsh1236I	CGCG	1 cut(s)	63
Bsh1285I	CGRYCG	1 cut(s)	275
BshFI	GGCC	4 cut(s)	274, 297, 414, 423
BsiEI	CGRYCG	1 cut(s)	275
BsiHKAI	GWGCWC	2 cut(s)	73, 305
BsiSI	CCGG	2 cut(s)	262, 385
BslI	CCNNNNNNNGG	1 cut(s)	355
BsnI	GGCC	4 cut(s)	274, 297, 414, 423
Bsp1286I	GDGCHC	2 cut(s)	73, 305
Bsp143I	GATC	2 cut(s)	15, 268
BspACI	CCGC	6 cut(s)	25, 58, 85, 275, 313, 411
BspANI	GGCC	4 cut(s)	274, 297, 414, 423
BspFNI	CGCG	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	89
BspPI	GGATC	1 cut(s)	23
BsrBI	CCGCTC	2 cut(s)	277, 411
BsrFI	RCCGGY	1 cut(s)	261
BssAI	RCCGGY	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	2 cut(s)	15, 268
BssNI	GRCGYC	1 cut(s)	104
BssT1I	CCWWGG	1 cut(s)	107
BstACI	GRCGYC	1 cut(s)	104
BstAPI	GCANNNNNTGC	1 cut(s)	424
BstC8I	GCNNGC	3 cut(s)	83, 416, 425
BstF5I	GGATG	2 cut(s)	83, 364
BstFNI	CGCG	1 cut(s)	63
BstHHI	GCGC	2 cut(s)	63, 370
BstKTI	GATC	2 cut(s)	18, 271
BstMBI	GATC	2 cut(s)	15, 268
BstMCI	CGRYCG	1 cut(s)	275
BstMWI	GCNNNNNNNGC	3 cut(s)	271, 420, 424
BstUI	CGCG	1 cut(s)	63
BstV2I	GAAGAC	1 cut(s)	386
BstZI	CGGCCG	1 cut(s)	272
BsuRI	GGCC	4 cut(s)	274, 297, 414, 423
BtgZI	GCGATG	1 cut(s)	78
BtsCI	GGATG	2 cut(s)	83, 364
Cac8I	GCNNGC	3 cut(s)	83, 416, 425
CfoI	GCGC	2 cut(s)	63, 370
Cfr10I	RCCGGY	1 cut(s)	261
Cfr13I	GGNCC	2 cut(s)	111, 250
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	335
CviAII	CATG	1 cut(s)	74
CviJI	RGCY	7 cut(s)	88, 274, 297, 303, 322, 414, 423
CviKI_1	RGCY	7 cut(s)	88, 274, 297, 303, 322, 414, 423
CviQI	GTAC	1 cut(s)	335
DpnI	GATC	2 cut(s)	17, 270
DpnII	GATC	2 cut(s)	15, 268
EaeI	YGGCCR	1 cut(s)	272
EagI	CGGCCG	1 cut(s)	272
Ecl136II	GAGCTC	1 cut(s)	303
EclXI	CGGCCG	1 cut(s)	272
Eco130I	CCWWGG	1 cut(s)	107
Eco147I	AGGCCT	1 cut(s)	423
Eco24I	GRGCYC	1 cut(s)	305
Eco47I	GGWCC	2 cut(s)	111, 250
Eco52I	CGGCCG	1 cut(s)	272
Eco53kI	GAGCTC	1 cut(s)	303
EcoICRI	GAGCTC	1 cut(s)	303
EcoT14I	CCWWGG	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	305
ErhI	CCWWGG	1 cut(s)	107
FaeI	CATG	1 cut(s)	77
FaiI	YATR	2 cut(s)	75, 227
FatI	CATG	1 cut(s)	73
Fnu4HI	GCNGC	5 cut(s)	26, 59, 86, 275, 412
FokI	GGATG	2 cut(s)	90, 371
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	5 cut(s)	26, 59, 86, 275, 412
GlaI	GCGC	2 cut(s)	62, 369
GluI	GCNGC	5 cut(s)	26, 59, 86, 275, 412
HaeIII	GGCC	4 cut(s)	274, 297, 414, 423
HapII	CCGG	2 cut(s)	262, 385
HgaI	GACGC	1 cut(s)	112
HhaI	GCGC	2 cut(s)	63, 370
Hin1I	GRCGYC	1 cut(s)	104
Hin1II	CATG	1 cut(s)	77
Hin6I	GCGC	2 cut(s)	61, 368
HinP1I	GCGC	2 cut(s)	61, 368
HinfI	GANTC	2 cut(s)	189, 375
HpaII	CCGG	2 cut(s)	262, 385
HphI	GGTGA	1 cut(s)	297
Hpy188I	TCNGA	2 cut(s)	281, 408
Hpy188III	TCNNGA	2 cut(s)	164, 243
HpyCH4V	TGCA	3 cut(s)	11, 51, 418
HpyF10VI	GCNNNNNNNGC	3 cut(s)	271, 420, 424
Hsp92I	GRCGYC	1 cut(s)	104
Hsp92II	CATG	1 cut(s)	77
HspAI	GCGC	2 cut(s)	61, 368
Kzo9I	GATC	2 cut(s)	15, 268
LmnI	GCTCC	2 cut(s)	93, 282
LpnPI	CCDG	8 cut(s)	67, 154, 275, 308, 311, 341, 398, 428
LweI	GCATC	1 cut(s)	68
MalI	GATC	2 cut(s)	17, 270
MbiI	CCGCTC	2 cut(s)	277, 411
MboI	GATC	2 cut(s)	15, 268
MboII	GAAGA	8 cut(s)	48, 168, 182, 185, 188, 191, 194, 386
MhlI	GDGCHC	2 cut(s)	73, 305
MluCI	AATT	2 cut(s)	238, 327
MlyI	GAGTC	1 cut(s)	183
MmeI	TCCRAC	2 cut(s)	277, 373
MnlI	CCTC	4 cut(s)	48, 208, 214, 318
MspA1I	CMGCKG	1 cut(s)	25
MspI	CCGG	2 cut(s)	262, 385
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	3 cut(s)	271, 420, 424
NdeII	GATC	2 cut(s)	15, 268
NlaIII	CATG	1 cut(s)	77
NlaIV	GGNNCC	1 cut(s)	89
PceI	AGGCCT	1 cut(s)	423
PcsI	WCGNNNNNNNCGW	1 cut(s)	277
PfeI	GAWTC	1 cut(s)	375
PkrI	GCNGC	5 cut(s)	27, 60, 87, 276, 413
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
Psp124BI	GAGCTC	1 cut(s)	305
PspN4I	GGNNCC	1 cut(s)	89
PspPI	GGNCC	2 cut(s)	111, 250
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
SacI	GAGCTC	1 cut(s)	305
SatI	GCNGC	5 cut(s)	26, 59, 86, 275, 412
Sau3AI	GATC	2 cut(s)	15, 268
Sau96I	GGNCC	2 cut(s)	111, 250
SchI	GAGTC	1 cut(s)	183
SduI	GDGCHC	2 cut(s)	73, 305
SetI	ASST	3 cut(s)	116, 305, 310
SfaNI	GCATC	1 cut(s)	68
SfiI	GGCCNNNNNGGCC	1 cut(s)	420
SinI	GGWCC	2 cut(s)	111, 250
Sse9I	AATT	2 cut(s)	238, 327
SseBI	AGGCCT	1 cut(s)	423
SsiI	CCGC	6 cut(s)	25, 58, 85, 275, 313, 411
SstI	GAGCTC	1 cut(s)	305
StuI	AGGCCT	1 cut(s)	423
StyI	CCWWGG	1 cut(s)	107
TaqI	TCGA	1 cut(s)	244
TaqII	GACCGA	1 cut(s)	303
TasI	AATT	2 cut(s)	238, 327
TauI	GCSGC	5 cut(s)	28, 61, 88, 277, 414
TfiI	GAWTC	1 cut(s)	375
TspDTI	ATGAA	1 cut(s)	183
VpaK11BI	GGWCC	2 cut(s)	111, 250
XapI	RAATTY	1 cut(s)	327
XcmI	CCANNNNNNNNNTGG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.