Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007283.1

Orthogroup ID

OG0003679

Physical Location & Seq

Genomic Coordinates Forward (+)

60325 .. 60939

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007283.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atgcatgagtgttttgagccgactcaggacccctacacgagaagtgatgtggttgatgatgtgatttttaataggcagaagaagtttcgagggttttatactgcggttttggagaggaatgaggaggtgattagcgcagctacagtgagggtttacagtgagctgggggaagtgccgctagtggcgactaagtttaagcaccggagacttgggatgtgtcgaattttgatgagtgagcttgagaaacagcttgtgaaattgggaattgagaagctggttttgccttctgctaaagatgcactggaggcatggactggtacctcacttgggttttcaaagatgactgctgacgaaacattaccattgttgaagtatagattctggaatttccaagacactaccatgtgtcacaaggtattgaagaagcagacgactagtactgaatctgatgggtctgctggtgccatttctacagtaacgcaaataggggacattgttgcaagtgaagaggcttgcattatggatattgattatgattatgatttcatgttggaggatgactctaaattcttgtcatggtacaaatgtggatctaaaaagattgtggctctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140096 GO:0140097 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1 Acetyltransf_10 Agenet Jas PHD

Protein Analysis

204

Amino Acids

23.2

Weight (kDa)

5.34

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63900
fragaria_vesca	FvH4_2g33101 FvH4_2g33110
malus_domestica	MD03G1066400.v1.1 MD08G1084100.v1.1 MD15G1070200.v1.1
prunus_persica	Prupe.1G423000_v2.0.a1
pyrus_communis	pycom08g06970
rosa_chinensis	RchiOBHm_Chr6g0309551 RchiOBHm_Chr6g0309571
rosa_laevigata	RLG00000010552 RLG00000010554
rosa_multiflora	Rmu_co8092108.1_g000001 Rmu_co8455997.1_g000001 Rmu_co8522085.1_g000002 Rmu_sc0007283.1_g000012 Rmu_sc0007283.1_g000014 Rmu_sc0024715.1_g000002 Rmu_sc0024715.1_g000003 Rmu_sc0030536.1_g000004 Rmu_sc0042371.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159310
rosa_rugosa	Rorug06G0372800 Rorug06G0372900
rosa_samantha	Rh6AG486200 Rh6AG486400 Rh6BG204300 Rh6BG495600 Rh6BG495800 Rh6CG500600 Rh6CG500700 Rh6DG486500 Rh6DG486600
rosa_wichuraiana	Rw6G042350 Rw6G042360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	317
AccB1I	GGYRCC	2 cut(s)	317, 461
AciI	CCGC	2 cut(s)	104, 176
AclWI	GGATC	1 cut(s)	598
AcsI	RAATTY	3 cut(s)	222, 385, 566
AfaI	GTAC	3 cut(s)	319, 439, 581
AfiI	CCNNNNNNNGG	1 cut(s)	327
AgsI	TTSAA	3 cut(s)	336, 370, 421
AhlI	ACTAGT	1 cut(s)	434
AluBI	AGCT	5 cut(s)	140, 163, 238, 250, 274
AluI	AGCT	5 cut(s)	140, 163, 238, 250, 274
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	598
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	3 cut(s)	222, 385, 566
Asp718I	GGTACC	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	139
AvaII	GGWCC	1 cut(s)	28
BaeI	ACNNNNGTAYC	2 cut(s)	571, 604
BanI	GGYRCC	2 cut(s)	317, 461
BauI	CACGAG	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	1 cut(s)	443
BcoDI	GTCTC	1 cut(s)	199
BcuI	ACTAGT	1 cut(s)	434
BfaI	CTAG	2 cut(s)	179, 435
BfmI	CTRYAG	2 cut(s)	141, 471
BisI	GCNGC	2 cut(s)	138, 176
BlsI	GCNGC	2 cut(s)	139, 177
BmcAI	AGTACT	1 cut(s)	439
Bme18I	GGWCC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	3 cut(s)	30, 319, 463
BmsI	GCATC	1 cut(s)	286
BplI	GAGNNNNNCTC	2 cut(s)	545, 577
BpmI	CTGGAG	1 cut(s)	323
BpuEI	CTTGAG	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	1 cut(s)	327
Bse1I	ACTGG	2 cut(s)	306, 319
BseGI	GGATG	2 cut(s)	219, 562
BseLI	CCNNNNNNNGG	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	2 cut(s)	306, 319
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	149
BseYI	CCCAGC	1 cut(s)	163
BshNI	GGYRCC	2 cut(s)	317, 461
BsiSI	CCGG	1 cut(s)	202
BslFI	GGGAC	1 cut(s)	503
BslI	CCNNNNNNNGG	1 cut(s)	327
BsmAI	GTCTC	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	503
Bsp143I	GATC	1 cut(s)	590
BspACI	CCGC	2 cut(s)	104, 176
BspCNI	CTCAG	1 cut(s)	37
BspLI	GGNNCC	3 cut(s)	30, 319, 463
BspPI	GGATC	1 cut(s)	598
BspT107I	GGYRCC	2 cut(s)	317, 461
BsrI	ACTGG	2 cut(s)	306, 319
BssMI	GATC	1 cut(s)	590
BssSI	CACGAG	1 cut(s)	37
Bst2BI	CACGAG	1 cut(s)	37
Bst4CI	ACNGT	3 cut(s)	145, 158, 475
Bst6I	CTCTTC	1 cut(s)	501
BstC8I	GCNNGC	1 cut(s)	514
BstDEI	CTNAG	2 cut(s)	24, 189
BstF5I	GGATG	2 cut(s)	219, 562
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	1 cut(s)	593
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	590
BstMWI	GCNNNNNNNGC	3 cut(s)	280, 296, 305
BstSFI	CTRYAG	2 cut(s)	141, 471
BstV1I	GCAGC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	590
BstYI	RGATCY	1 cut(s)	590
BtsCI	GGATG	2 cut(s)	219, 562
BtsIMutI	CAGTG	3 cut(s)	150, 163, 299
Cac8I	GCNNGC	1 cut(s)	514
CfoI	GCGC	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	28
Csp6I	GTAC	3 cut(s)	318, 438, 580
CviAII	CATG	5 cut(s)	5, 309, 403, 547, 576
CviJI	RGCY	8 cut(s)	19, 140, 163, 238, 250, 274, 512, 608
CviKI_1	RGCY	8 cut(s)	19, 140, 163, 238, 250, 274, 512, 608
CviQI	GTAC	3 cut(s)	318, 438, 580
DdeI	CTNAG	2 cut(s)	24, 189
DpnI	GATC	1 cut(s)	592
DpnII	GATC	1 cut(s)	590
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Eco47I	GGWCC	1 cut(s)	28
EcoO109I	RGGNCCY	1 cut(s)	28
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	5 cut(s)	8, 312, 406, 550, 579
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	5 cut(s)	4, 308, 402, 546, 575
Fnu4HI	GCNGC	2 cut(s)	138, 176
FokI	GGATG	2 cut(s)	226, 569
Fsp4HI	GCNGC	2 cut(s)	138, 176
FspBI	CTAG	2 cut(s)	179, 435
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	2 cut(s)	138, 176
GsaI	CCCAGC	1 cut(s)	167
GsuI	CTGGAG	1 cut(s)	323
HapII	CCGG	1 cut(s)	202
HhaI	GCGC	1 cut(s)	137
Hin1II	CATG	5 cut(s)	8, 312, 406, 550, 579
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HinfI	GANTC	4 cut(s)	22, 378, 443, 560
HpaII	CCGG	1 cut(s)	202
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	1 cut(s)	448
Hpy188III	TCNNGA	2 cut(s)	26, 382
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	1 cut(s)	294
HpyCH4III	ACNGT	3 cut(s)	145, 158, 475
HpyCH4V	TGCA	4 cut(s)	4, 299, 500, 516
HpyF10VI	GCNNNNNNNGC	3 cut(s)	280, 296, 305
HpyF3I	CTNAG	2 cut(s)	24, 189
Hsp92II	CATG	5 cut(s)	8, 312, 406, 550, 579
HspAI	GCGC	1 cut(s)	135
KpnI	GGTACC	1 cut(s)	321
Kzo9I	GATC	1 cut(s)	590
LpnPI	CCDG	8 cut(s)	11, 149, 215, 260, 287, 300, 367, 444
Lsp1109I	GCAGC	1 cut(s)	149
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	2 cut(s)	179, 435
MaeIII	GTNAC	2 cut(s)	407, 475
MalI	GATC	1 cut(s)	592
MboI	GATC	1 cut(s)	590
MboII	GAAGA	3 cut(s)	91, 433, 518
MflI	RGATCY	1 cut(s)	590
MluCI	AATT	5 cut(s)	222, 257, 264, 385, 566
MlyI	GAGTC	2 cut(s)	16, 554
MmeI	TCCRAC	1 cut(s)	531
MnlI	CCTC	9 cut(s)	83, 108, 115, 118, 141, 298, 331, 502, 547
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	69, 195
MslI	CAYNNNNRTG	1 cut(s)	401
MspI	CCGG	1 cut(s)	202
MwoI	GCNNNNNNNGC	3 cut(s)	280, 296, 305
NdeII	GATC	1 cut(s)	590
NlaIII	CATG	5 cut(s)	8, 312, 406, 550, 579
NlaIV	GGNNCC	3 cut(s)	30, 319, 463
NmuCI	GTSAC	1 cut(s)	407
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	2 cut(s)	378, 443
PkrI	GCNGC	2 cut(s)	139, 177
PleI	GAGTC	2 cut(s)	16, 554
PpsI	GAGTC	2 cut(s)	16, 554
PpuMI	RGGWCCY	1 cut(s)	28
Psp5II	RGGWCCY	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	163
PspN4I	GGNNCC	3 cut(s)	30, 319, 463
PspPI	GGNCC	1 cut(s)	28
PspPPI	RGGWCCY	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	590
RsaI	GTAC	3 cut(s)	319, 439, 581
RsaNI	GTAC	3 cut(s)	318, 438, 580
RseI	CAYNNNNRTG	1 cut(s)	401
SaqAI	TTAA	2 cut(s)	69, 195
SatI	GCNGC	2 cut(s)	138, 176
Sau3AI	GATC	1 cut(s)	590
Sau96I	GGNCC	1 cut(s)	28
ScaI	AGTACT	1 cut(s)	439
SchI	GAGTC	2 cut(s)	16, 554
SetI	ASST	8 cut(s)	129, 142, 165, 240, 252, 276, 323, 417
SfaNI	GCATC	1 cut(s)	286
SfcI	CTRYAG	2 cut(s)	141, 471
SinI	GGWCC	1 cut(s)	28
SmiMI	CAYNNNNRTG	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
SpeI	ACTAGT	1 cut(s)	434
Sse9I	AATT	5 cut(s)	222, 257, 264, 385, 566
SsiI	CCGC	2 cut(s)	104, 176
SspMI	CTAG	2 cut(s)	179, 435
TaaI	ACNGT	3 cut(s)	145, 158, 475
TaqI	TCGA	2 cut(s)	88, 220
TasI	AATT	5 cut(s)	222, 257, 264, 385, 566
TatI	WGTACW	1 cut(s)	437
TauI	GCSGC	1 cut(s)	178
TfiI	GAWTC	2 cut(s)	378, 443
Tru1I	TTAA	2 cut(s)	69, 195
Tru9I	TTAA	2 cut(s)	69, 195
TscAI	CASTG	3 cut(s)	150, 163, 306
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	1 cut(s)	535
TspRI	CASTG	3 cut(s)	150, 163, 306
VpaK11BI	GGWCC	1 cut(s)	28
XapI	RAATTY	3 cut(s)	222, 385, 566
XspI	CTAG	2 cut(s)	179, 435
ZrmI	AGTACT	1 cut(s)	439
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.