Rorug06G0372800

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003679
Physical Location & Seq
Reverse (-)
51932128 .. 51932759
632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0372800.1

Sequence Viewer

Length: 501 bp
ATGGCTGCTTCTTCTTCTACGGCTGCTGATGTTCTCCCTCAACAAAAGTATGATGTCTTTCTTAGTTTCAGAGGTGAGGCCCGCCTTAAATTTATCAGCCATCTCTATGCTGCTTTGAAGCGGAAACAAATCCTTACCTACATGGATGATAAGTCGCTTGAGAGTGGAGATGAAATTGGACCTGCCTTATCGACAGCAATCGAGCAATCCAAGCTTTCGATAATCATTTTCTCAAAACACTATGCTTCTTCTCGATGGTGCTTAGATGAACTTGTGCATATACTAAAATGTAAAGAAGCATATGGACAGCTTGTTGTACCCGTTTTCTATGACATTGATCCTTCAGATGTACGGCAGCAGAAACGGACTTATGCAGATGCATTTGCAGTTCTTGAAGAGAGATTCAAAGACAAAAAAGGGACAAGGTGTGCAAGTGGAGAAATGCTCTCACAACAGCAGCCAATTGTTGATGTCATAATTTGGTTCGACAAATACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140096 GO:0140097 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 Agenet Jas PHD

Protein Analysis

166

Amino Acids

18.96

Weight (kDa)

6.82

Isoelectric Point (pI)

61.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 16 - 138 2.1e-39 TIR domain
TIR_2 PF13676 19 - 128 2.8e-17 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 190
AciI CCGC 2 cut(s) 82, 121
AclWI GGATC 1 cut(s) 332
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 1 cut(s) 327
AfaI GTAC 2 cut(s) 318, 351
AgsI TTSAA 3 cut(s) 118, 395, 406
AluBI AGCT 2 cut(s) 214, 310
AluI AGCT 2 cut(s) 214, 310
AlwI GGATC 1 cut(s) 332
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 5 cut(s) 5, 23, 110, 355, 457
ApoI RAATTY 1 cut(s) 89
AspS9I GGNCC 2 cut(s) 79, 179
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 1 cut(s) 179
BbvI GCAGC 4 cut(s) 10, 97, 367, 469
BccI CCATC 2 cut(s) 108, 249
BceAI ACGGC 2 cut(s) 36, 368
BfuAI ACCTGC 1 cut(s) 190
BisI GCNGC 5 cut(s) 6, 24, 111, 356, 458
BlsI GCNGC 5 cut(s) 7, 25, 112, 357, 459
Bme18I GGWCC 1 cut(s) 179
BmgT120I GGNCC 2 cut(s) 79, 179
BmsI GCATC 1 cut(s) 367
BplI GAGNNNNNCTC 2 cut(s) 429, 461
BpuEI CTTGAG 1 cut(s) 179
BseGI GGATG 1 cut(s) 151
BseXI GCAGC 4 cut(s) 10, 97, 367, 469
BshFI GGCC 1 cut(s) 80
BslFI GGGAC 1 cut(s) 433
BsmFI GGGAC 1 cut(s) 433
BsnI GGCC 1 cut(s) 80
Bsp143I GATC 1 cut(s) 337
BspACI CCGC 2 cut(s) 82, 121
BspANI GGCC 1 cut(s) 80
BspMI ACCTGC 1 cut(s) 190
BspPI GGATC 1 cut(s) 332
BssMI GATC 1 cut(s) 337
Bst6I CTCTTC 1 cut(s) 390
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 2 cut(s) 62, 262
BstF5I GGATG 1 cut(s) 151
BstKTI GATC 1 cut(s) 340
BstMBI GATC 1 cut(s) 337
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstV1I GCAGC 4 cut(s) 10, 97, 367, 469
BsuRI GGCC 1 cut(s) 80
BtsCI GGATG 1 cut(s) 151
BveI ACCTGC 1 cut(s) 190
Cac8I GCNNGC 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 79, 179
Csp6I GTAC 2 cut(s) 317, 350
CviAII CATG 1 cut(s) 142
CviJI RGCY 7 cut(s) 5, 23, 80, 99, 214, 310, 460
CviKI_1 RGCY 7 cut(s) 5, 23, 80, 99, 214, 310, 460
CviQI GTAC 2 cut(s) 317, 350
DdeI CTNAG 2 cut(s) 62, 262
DpnI GATC 1 cut(s) 339
DpnII GATC 1 cut(s) 337
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Eco47I GGWCC 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 327
EcoT22I ATGCAT 1 cut(s) 382
FaeI CATG 1 cut(s) 145
FaqI GGGAC 1 cut(s) 433
FatI CATG 1 cut(s) 141
FauI CCCGC 1 cut(s) 89
FauNDI CATATG 1 cut(s) 301
Fnu4HI GCNGC 5 cut(s) 6, 24, 111, 356, 458
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 5 cut(s) 6, 24, 111, 356, 458
GluI GCNGC 5 cut(s) 6, 24, 111, 356, 458
HaeIII GGCC 1 cut(s) 80
Hin1II CATG 1 cut(s) 145
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 1 cut(s) 402
HphI GGTGA 1 cut(s) 86
Hpy188I TCNGA 2 cut(s) 71, 346
Hpy188III TCNNGA 2 cut(s) 252, 392
HpyAV CCTTC 1 cut(s) 351
HpyCH4V TGCA 5 cut(s) 277, 374, 380, 386, 431
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
HpyF3I CTNAG 2 cut(s) 62, 262
Hsp92II CATG 1 cut(s) 145
Kzo9I GATC 1 cut(s) 337
LpnPI CCDG 1 cut(s) 195
Lsp1109I GCAGC 4 cut(s) 10, 97, 367, 469
LweI GCATC 1 cut(s) 367
MalI GATC 1 cut(s) 339
MboI GATC 1 cut(s) 337
MboII GAAGA 4 cut(s) 3, 6, 240, 407
MfeI CAATTG 1 cut(s) 462
MluCI AATT 4 cut(s) 89, 174, 462, 477
MnlI CCTC 3 cut(s) 48, 65, 70
Mph1103I ATGCAT 1 cut(s) 382
MseI TTAA 1 cut(s) 87
MslI CAYNNNNRTG 1 cut(s) 105
MunI CAATTG 1 cut(s) 462
MwoI GCNNNNNNNGC 1 cut(s) 211
NdeI CATATG 1 cut(s) 301
NdeII GATC 1 cut(s) 337
NlaIII CATG 1 cut(s) 145
NsiI ATGCAT 1 cut(s) 382
PfeI GAWTC 1 cut(s) 402
PkrI GCNGC 5 cut(s) 7, 25, 112, 357, 459
PspPI GGNCC 2 cut(s) 79, 179
RsaI GTAC 2 cut(s) 318, 351
RsaNI GTAC 2 cut(s) 317, 350
RseI CAYNNNNRTG 1 cut(s) 105
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 5 cut(s) 6, 24, 111, 356, 458
Sau3AI GATC 1 cut(s) 337
Sau96I GGNCC 2 cut(s) 79, 179
SetI ASST 6 cut(s) 76, 140, 184, 216, 312, 428
SfaNI GCATC 1 cut(s) 367
SinI GGWCC 1 cut(s) 179
SmiMI CAYNNNNRTG 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 4 cut(s) 89, 174, 462, 477
SsiI CCGC 2 cut(s) 82, 121
TaqI TCGA 5 cut(s) 191, 201, 218, 253, 486
TasI AATT 4 cut(s) 89, 174, 462, 477
TfiI GAWTC 1 cut(s) 402
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TseI GCWGC 5 cut(s) 5, 23, 110, 355, 457
TspDTI ATGAA 2 cut(s) 186, 282
TspGWI ACGGA 1 cut(s) 379
VpaK11BI GGWCC 1 cut(s) 179
XapI RAATTY 1 cut(s) 89
Zsp2I ATGCAT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.