RLG00000010552

Acyl-CoA N-acyltransferase with RING FYVE PHD-type zinc finger protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
2578037 .. 2579629
1593 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010552

Sequence Viewer

Length: 1593 bp
ATGAAGAAGAAGAAGAAGAACGACTCTGTTCCTCTCCGTCTCATTGTGAAACCCCGATTATGCCCCGAAGCAATTCTCGAATGGTCCAACACCACCGGCAAGATCAGCCGCTCCGATTTGACCGAAAAGGCCAGAGCTCACCTCTCCGCATTGGGCTGGAAATTTTGGTACAAAAACAAGTCCAACAACAGGATGGAGTTGCGCTACGAATCTCCCACCGGAAAAGTCTTCTACTCTCTCCGAACGGCCTGCAAGGCCTGCGTTGAAGAAGAAGGACTAGGACTGTCCCAGATTGTTAAGCACACCACCCTAAAACCTAAGGACGCCCTGGCCCTGCCTGTTGTTGACGCCGGTGACTTGGCAGTAGTACTAGTACCTCCTCCTGAAAAGCCCAAGAGATCATCAAAGAGGAAGCTTGATGCAATAGGGGAGCCGGTTCGGAATCTGAAACCGAAAAGAGGCAAGGTTCTTGCGGATTTGAAGAGAGTTAGAGATGAAAAGGAGAGGAATAGGGATGTCAAGATGAGGTCAAGTGATGATGAGAACCATGATGAGTGCAGTGTGTGTTGCTATGGAGGGGAATTGGTTCTCTGCGATGGATGTCCCTCTGCTTTTCATGCTGGCTGCATTGGTTTGTGTGAGGTGGGAGATGGTGATTGGTTCTGCCCATCTTGCTGCTGTGGGTTTTGCAGCTTAGGAATATTGGAGGATGATGGTGTTGCCTCATGTGACCAATGCAGGCAGAGGTACCACATTGGGTGTGCAAGAAATTCAGGGGAGGCTAAATTGGGTGTGGATGGGAAATTGTTTTGCAGTAGGAAATGTGAAAATGTGTGTTTGGGGATCAACAAGATTTTGGGGAAGGCTATTGTGGTTGGTCCTGATAATCTTACTTGGACTTTGCTCAAGTCCTCCTCAACTTGTGATGTGGACAACTTGACCAGGAATTACAGACAGCACAAATTGGCTGTGGAGGTGATGCATGAGTGTTTTGAGCCGACTCAGGACCCCTACACGAGAAGTGATGTGGTTGATGATGTGATTTTTAATAGGCAGAAGAAGTTTCGAGGGTTTTATACTGCGGTTTTGGAGATGAATGAGGAGGTGATTAGCGCAGCTACGGTGAGGGTTTACAGTGAGCTGGGGGAAGTGCCGCTAGTGGCGACTAAGTTTAAGCACCGGAGACTTGGGATGTGTCGGATTTTGATGAGTGAGCTTGAGAAACAGCTTGTGAAGTTGGGAATTGGGAAGCTGGTTTTGCCTTCTGCTAAAGATGCACTGGAGGCATGGACTAGTACCTCGCTTGGGTTTTCGAAGATGACTGCTGACGAAACATTACCATTGTTGAAGTATAAATTCTGGAATTTCCAAGACACTACCATGTGTCACAAGGTATTGAAGGAGCAGACGACTAGTACTGAATCTGATGGGTCTGCTGGTGCCATTTCTACAGTAGCGCAAGTAGGGGACATTGATGCAAGTGAAGAGGCTTGCGTTATGGATATTGATTATGATTATGATTTCATGTTGGAGGATGACTGTAAATTCTTGTCATGGTACAAATCTGGATCTAAAAAGATTGTGGCTCTCTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

531

Amino Acids

59.15

Weight (kDa)

8.14

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7028 PF22970 15 - 91 1.5e-27 Domain of unknown function (DUF7028)
IDM1_C PF23209 331 - 464 4.1e-40 Increased DNA methylation 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 747
AccB1I GGYRCC 2 cut(s) 747, 1439
AccBSI CCGCTC 1 cut(s) 111
AciI CCGC 5 cut(s) 109, 147, 473, 1082, 1154
AclWI GGATC 2 cut(s) 851, 1576
AcsI RAATTY 5 cut(s) 161, 769, 1355, 1363, 1544
AcyI GRCGYC 2 cut(s) 324, 348
AfaI GTAC 7 cut(s) 170, 369, 375, 749, 1297, 1417, 1559
AfiI CCNNNNNNNGG 3 cut(s) 189, 458, 1305
AgsI TTSAA 4 cut(s) 266, 481, 1348, 1399
AhlI ACTAGT 3 cut(s) 370, 1292, 1412
AjnI CCWGG 2 cut(s) 327, 941
AluBI AGCT 8 cut(s) 137, 415, 693, 1118, 1141, 1216, 1228, 1252
AluI AGCT 8 cut(s) 137, 415, 693, 1118, 1141, 1216, 1228, 1252
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 2 cut(s) 44, 1177
AlwI GGATC 2 cut(s) 851, 1576
AoxI GGCC 4 cut(s) 129, 246, 255, 330
ApeKI GCWGC 4 cut(s) 624, 675, 690, 1115
ApoI RAATTY 5 cut(s) 161, 769, 1355, 1363, 1544
Asp700I GAANNNNTTC 2 cut(s) 72, 585
Asp718I GGTACC 1 cut(s) 747
AspLEI GCGC 3 cut(s) 204, 1115, 1459
AspS9I GGNCC 4 cut(s) 84, 331, 878, 1006
AsuHPI GGTGA 6 cut(s) 131, 365, 665, 988, 1117, 1135
AsuII TTCGAA 1 cut(s) 1313
AvaII GGWCC 3 cut(s) 84, 878, 1006
AxyI CCTNAGG 1 cut(s) 318
BanI GGYRCC 2 cut(s) 747, 1439
BanII GRGCYC 1 cut(s) 139
BauI CACGAG 1 cut(s) 1015
BbsI GAAGAC 1 cut(s) 220
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 4 cut(s) 611, 662, 702, 1127
BccI CCATC 7 cut(s) 187, 590, 644, 676, 707, 791, 1421
BceAI ACGGC 1 cut(s) 261
BcgI CGANNNNNNTGC 2 cut(s) 231, 265
BciT130I CCWGG 2 cut(s) 329, 943
BcoDI GTCTC 2 cut(s) 44, 1177
BcuI ACTAGT 3 cut(s) 370, 1292, 1412
BfaI CTAG 5 cut(s) 278, 371, 1157, 1293, 1413
BfmI CTRYAG 1 cut(s) 1449
BglI GCCNNNNNGGC 1 cut(s) 254
BisI GCNGC 6 cut(s) 109, 625, 676, 691, 1116, 1154
BlsI GCNGC 6 cut(s) 110, 626, 677, 692, 1117, 1155
BmcAI AGTACT 2 cut(s) 369, 1417
Bme1390I CCNGG 2 cut(s) 329, 943
Bme18I GGWCC 3 cut(s) 84, 878, 1006
BmgT120I GGNCC 4 cut(s) 84, 331, 878, 1006
BmiI GGNNCC 4 cut(s) 432, 749, 1008, 1441
BmrFI CCNGG 2 cut(s) 329, 943
BmsI GCATC 4 cut(s) 409, 969, 1264, 1465
BpiI GAAGAC 1 cut(s) 220
BplI GAGNNNNNCTC 2 cut(s) 126, 158
BpmI CTGGAG 1 cut(s) 1301
Bpu10I CCTNAGC 1 cut(s) 694
Bpu14I TTCGAA 1 cut(s) 1313
BpuEI CTTGAG 2 cut(s) 890, 1238
BsaHI GRCGYC 2 cut(s) 324, 348
BsaJI CCNNGG 1 cut(s) 327
BsaWI WCCGGW 2 cut(s) 218, 1179
Bsc4I CCNNNNNNNGG 3 cut(s) 189, 458, 1305
Bse118I RCCGGY 3 cut(s) 95, 350, 433
Bse1I ACTGG 1 cut(s) 1284
Bse21I CCTNAGG 1 cut(s) 318
BseBI CCWGG 2 cut(s) 329, 943
BseDI CCNNGG 1 cut(s) 327
BseGI GGATG 7 cut(s) 198, 520, 605, 715, 802, 1197, 1540
BseLI CCNNNNNNNGG 3 cut(s) 189, 458, 1305
BseMII CTCAG 1 cut(s) 1016
BseNI ACTGG 1 cut(s) 1284
BseRI GAGGAG 3 cut(s) 369, 904, 1115
BseXI GCAGC 4 cut(s) 611, 662, 702, 1127
BseYI CCCAGC 1 cut(s) 1141
BsgI GTGCAG 1 cut(s) 577
BshFI GGCC 4 cut(s) 131, 248, 257, 332
BshNI GGYRCC 2 cut(s) 747, 1439
BsiHKAI GWGCWC 1 cut(s) 139
BsiSI CCGG 5 cut(s) 96, 219, 351, 434, 1180
BslFI GGGAC 3 cut(s) 271, 588, 1481
BslI CCNNNNNNNGG 3 cut(s) 189, 458, 1305
BsmAI GTCTC 2 cut(s) 44, 1177
BsmBI CGTCTC 1 cut(s) 44
BsmFI GGGAC 3 cut(s) 271, 588, 1481
BsnI GGCC 4 cut(s) 131, 248, 257, 332
Bsp119I TTCGAA 1 cut(s) 1313
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 4 cut(s) 102, 398, 843, 1568
BspACI CCGC 5 cut(s) 109, 147, 473, 1082, 1154
BspANI GGCC 4 cut(s) 131, 248, 257, 332
BspCNI CTCAG 1 cut(s) 1015
BspLI GGNNCC 4 cut(s) 432, 749, 1008, 1441
BspPI GGATC 2 cut(s) 851, 1576
BspT104I TTCGAA 1 cut(s) 1313
BspT107I GGYRCC 2 cut(s) 747, 1439
BsrBI CCGCTC 1 cut(s) 111
BsrFI RCCGGY 3 cut(s) 95, 350, 433
BsrI ACTGG 1 cut(s) 1284
BssAI RCCGGY 3 cut(s) 95, 350, 433
BssECI CCNNGG 1 cut(s) 327
BssMI GATC 4 cut(s) 102, 398, 843, 1568
BssNI GRCGYC 2 cut(s) 324, 348
BssSI CACGAG 1 cut(s) 1015
Bst2BI CACGAG 1 cut(s) 1015
Bst2UI CCWGG 2 cut(s) 329, 943
Bst4CI ACNGT 5 cut(s) 285, 1123, 1136, 1453, 1541
Bst6I CTCTTC 2 cut(s) 476, 1479
BstACI GRCGYC 2 cut(s) 324, 348
BstAPI GCANNNNNTGC 1 cut(s) 258
BstBI TTCGAA 1 cut(s) 1313
BstC8I GCNNGC 5 cut(s) 250, 259, 622, 740, 1492
BstDEI CTNAG 4 cut(s) 318, 694, 1002, 1167
BstF5I GGATG 7 cut(s) 198, 520, 605, 715, 802, 1197, 1540
BstHHI GCGC 3 cut(s) 204, 1115, 1459
BstKTI GATC 4 cut(s) 105, 401, 846, 1571
BstMAI GTCTC 2 cut(s) 44, 1177
BstMBI GATC 4 cut(s) 102, 398, 843, 1568
BstMWI GCNNNNNNNGC 8 cut(s) 105, 254, 258, 617, 672, 1258, 1274, 1283
BstNI CCWGG 2 cut(s) 329, 943
BstSCI CCNGG 2 cut(s) 327, 941
BstSFI CTRYAG 1 cut(s) 1449
BstV1I GCAGC 4 cut(s) 611, 662, 702, 1127
BstV2I GAAGAC 1 cut(s) 220
BstX2I RGATCY 1 cut(s) 1568
BstYI RGATCY 1 cut(s) 1568
Bsu36I CCTNAGG 1 cut(s) 318
BsuRI GGCC 4 cut(s) 131, 248, 257, 332
BtgZI GCGATG 1 cut(s) 609
BtsCI GGATG 7 cut(s) 198, 520, 605, 715, 802, 1197, 1540
BtsI GCAGTG 1 cut(s) 565
BtsIMutI CAGTG 3 cut(s) 565, 1141, 1277
Cac8I GCNNGC 5 cut(s) 250, 259, 622, 740, 1492
CfoI GCGC 3 cut(s) 204, 1115, 1459
Cfr10I RCCGGY 3 cut(s) 95, 350, 433
Cfr13I GGNCC 4 cut(s) 84, 331, 878, 1006
CseI GACGC 2 cut(s) 332, 356
Csp6I GTAC 7 cut(s) 169, 368, 374, 748, 1296, 1416, 1558
CviAII CATG 8 cut(s) 548, 617, 726, 983, 1287, 1381, 1525, 1554
CviQI GTAC 7 cut(s) 169, 368, 374, 748, 1296, 1416, 1558
DdeI CTNAG 4 cut(s) 318, 694, 1002, 1167
DpnI GATC 4 cut(s) 104, 400, 845, 1570
DpnII GATC 4 cut(s) 102, 398, 843, 1568
Eam1104I CTCTTC 2 cut(s) 476, 1479
EarI CTCTTC 2 cut(s) 476, 1479
Ecl136II GAGCTC 1 cut(s) 137
Eco147I AGGCCT 1 cut(s) 257
Eco24I GRGCYC 1 cut(s) 139
Eco47I GGWCC 3 cut(s) 84, 878, 1006
Eco53kI GAGCTC 1 cut(s) 137
Eco81I CCTNAGG 1 cut(s) 318
EcoICRI GAGCTC 1 cut(s) 137
EcoO109I RGGNCCY 1 cut(s) 1006
EcoRII CCWGG 2 cut(s) 327, 941
EcoT22I ATGCAT 1 cut(s) 984
EcoT38I GRGCYC 1 cut(s) 139
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 8 cut(s) 551, 620, 729, 986, 1290, 1384, 1528, 1557
FaqI GGGAC 3 cut(s) 271, 588, 1481
FatI CATG 8 cut(s) 547, 616, 725, 982, 1286, 1380, 1524, 1553
Fnu4HI GCNGC 6 cut(s) 109, 625, 676, 691, 1116, 1154
FokI GGATG 7 cut(s) 205, 527, 612, 722, 809, 1204, 1547
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 6 cut(s) 109, 625, 676, 691, 1116, 1154
FspBI CTAG 5 cut(s) 278, 371, 1157, 1293, 1413
GlaI GCGC 3 cut(s) 203, 1114, 1458
GluI GCNGC 6 cut(s) 109, 625, 676, 691, 1116, 1154
GsaI CCCAGC 1 cut(s) 1145
GsuI CTGGAG 1 cut(s) 1301
HaeIII GGCC 4 cut(s) 131, 248, 257, 332
HapII CCGG 5 cut(s) 96, 219, 351, 434, 1180
HgaI GACGC 2 cut(s) 332, 356
HhaI GCGC 3 cut(s) 204, 1115, 1459
Hin1I GRCGYC 2 cut(s) 324, 348
Hin1II CATG 8 cut(s) 551, 620, 729, 986, 1290, 1384, 1528, 1557
Hin6I GCGC 3 cut(s) 202, 1113, 1457
HinP1I GCGC 3 cut(s) 202, 1113, 1457
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HindIII AAGCTT 1 cut(s) 413
HinfI GANTC 5 cut(s) 23, 209, 442, 1000, 1421
HpaII CCGG 5 cut(s) 96, 219, 351, 434, 1180
HphI GGTGA 6 cut(s) 131, 365, 665, 988, 1117, 1135
Hpy166II GTNNAC 3 cut(s) 346, 931, 1132
Hpy188I TCNGA 6 cut(s) 115, 242, 441, 447, 1200, 1426
Hpy188III TCNNGA 7 cut(s) 77, 383, 520, 881, 1004, 1360, 1566
Hpy8I GTNNAC 3 cut(s) 346, 931, 1132
HpyAV CCTTC 4 cut(s) 266, 856, 1272, 1393
HpyCH4III ACNGT 5 cut(s) 285, 1123, 1136, 1453, 1541
HpyF10VI GCNNNNNNNGC 8 cut(s) 105, 254, 258, 617, 672, 1258, 1274, 1283
HpyF3I CTNAG 4 cut(s) 318, 694, 1002, 1167
Hsp92I GRCGYC 2 cut(s) 324, 348
Hsp92II CATG 8 cut(s) 551, 620, 729, 986, 1290, 1384, 1528, 1557
HspAI GCGC 3 cut(s) 202, 1113, 1457
KpnI GGTACC 1 cut(s) 751
Kzo9I GATC 4 cut(s) 102, 398, 843, 1568
LmnI GCTCC 3 cut(s) 116, 430, 1402
Lsp1109I GCAGC 4 cut(s) 611, 662, 702, 1127
LweI GCATC 4 cut(s) 409, 969, 1264, 1465
MaeI CTAG 5 cut(s) 278, 371, 1157, 1293, 1413
MaeIII GTNAC 3 cut(s) 353, 728, 1385
MalI GATC 4 cut(s) 104, 400, 845, 1570
MbiI CCGCTC 1 cut(s) 111
MboI GATC 4 cut(s) 102, 398, 843, 1568
MflI RGATCY 1 cut(s) 1568
MhlI GDGCHC 1 cut(s) 139
MlyI GAGTC 2 cut(s) 17, 994
MmeI TCCRAC 4 cut(s) 111, 207, 1178, 1509
Mph1103I ATGCAT 1 cut(s) 984
MroXI GAANNNNTTC 2 cut(s) 72, 585
MseI TTAA 3 cut(s) 297, 1047, 1173
MslI CAYNNNNRTG 1 cut(s) 1379
MspI CCGG 5 cut(s) 96, 219, 351, 434, 1180
MspR9I CCNGG 2 cut(s) 329, 943
MvaI CCWGG 2 cut(s) 329, 943
MwoI GCNNNNNNNGC 8 cut(s) 105, 254, 258, 617, 672, 1258, 1274, 1283
NdeII GATC 4 cut(s) 102, 398, 843, 1568
NlaIII CATG 8 cut(s) 551, 620, 729, 986, 1290, 1384, 1528, 1557
NlaIV GGNNCC 4 cut(s) 432, 749, 1008, 1441
NmuCI GTSAC 3 cut(s) 353, 728, 1385
NsiI ATGCAT 1 cut(s) 984
NspV TTCGAA 1 cut(s) 1313
PceI AGGCCT 1 cut(s) 257
PdmI GAANNNNTTC 2 cut(s) 72, 585
PfeI GAWTC 3 cut(s) 209, 442, 1421
PkrI GCNGC 6 cut(s) 110, 626, 677, 692, 1117, 1155
PleI GAGTC 2 cut(s) 17, 994
PpsI GAGTC 2 cut(s) 17, 994
PpuMI RGGWCCY 1 cut(s) 1006
Psp124BI GAGCTC 1 cut(s) 139
Psp5II RGGWCCY 1 cut(s) 1006
Psp6I CCWGG 2 cut(s) 327, 941
PspFI CCCAGC 1 cut(s) 1141
PspGI CCWGG 2 cut(s) 327, 941
PspN4I GGNNCC 4 cut(s) 432, 749, 1008, 1441
PspPI GGNCC 4 cut(s) 84, 331, 878, 1006
PspPPI RGGWCCY 1 cut(s) 1006
PsuI RGATCY 1 cut(s) 1568
RsaI GTAC 7 cut(s) 170, 369, 375, 749, 1297, 1417, 1559
RsaNI GTAC 7 cut(s) 169, 368, 374, 748, 1296, 1416, 1558
RseI CAYNNNNRTG 1 cut(s) 1379
SacI GAGCTC 1 cut(s) 139
SaqAI TTAA 3 cut(s) 297, 1047, 1173
SatI GCNGC 6 cut(s) 109, 625, 676, 691, 1116, 1154
Sau3AI GATC 4 cut(s) 102, 398, 843, 1568
Sau96I GGNCC 4 cut(s) 84, 331, 878, 1006
ScaI AGTACT 2 cut(s) 369, 1417
SchI GAGTC 2 cut(s) 17, 994
ScrFI CCNGG 2 cut(s) 329, 943
SduI GDGCHC 1 cut(s) 139
SfaNI GCATC 4 cut(s) 409, 969, 1264, 1465
SfcI CTRYAG 1 cut(s) 1449
SfiI GGCCNNNNNGGCC 1 cut(s) 254
SfuI TTCGAA 1 cut(s) 1313
SgrAI CRCCGGYG 1 cut(s) 350
SinI GGWCC 3 cut(s) 84, 878, 1006
SmiMI CAYNNNNRTG 1 cut(s) 1379
SmlI CTYRAG 2 cut(s) 905, 1217
SmoI CTYRAG 2 cut(s) 905, 1217
SpeI ACTAGT 3 cut(s) 370, 1292, 1412
SseBI AGGCCT 1 cut(s) 257
SsiI CCGC 5 cut(s) 109, 147, 473, 1082, 1154
SspI AATATT 1 cut(s) 702
SspMI CTAG 5 cut(s) 278, 371, 1157, 1293, 1413
SstI GAGCTC 1 cut(s) 139
StuI AGGCCT 1 cut(s) 257
StyD4I CCNGG 2 cut(s) 327, 941
TaaI ACNGT 5 cut(s) 285, 1123, 1136, 1453, 1541
TaqI TCGA 3 cut(s) 78, 1066, 1313
TaqII GACCGA 1 cut(s) 137
TatI WGTACW 2 cut(s) 367, 1415
TauI GCSGC 2 cut(s) 111, 1156
TfiI GAWTC 3 cut(s) 209, 442, 1421
Tru1I TTAA 3 cut(s) 297, 1047, 1173
Tru9I TTAA 3 cut(s) 297, 1047, 1173
TscAI CASTG 3 cut(s) 565, 1141, 1284
TseFI GTSAC 3 cut(s) 353, 728, 1385
TseI GCWGC 4 cut(s) 624, 675, 690, 1115
Tsp45I GTSAC 3 cut(s) 353, 728, 1385
TspDTI ATGAA 5 cut(s) 17, 510, 605, 1109, 1513
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 3 cut(s) 565, 1141, 1284
VpaK11BI GGWCC 3 cut(s) 84, 878, 1006
XapI RAATTY 5 cut(s) 161, 769, 1355, 1363, 1544
XcmI CCANNNNNNNNNTGG 1 cut(s) 190
XmnI GAANNNNTTC 2 cut(s) 72, 585
XspI CTAG 5 cut(s) 278, 371, 1157, 1293, 1413
ZrmI AGTACT 2 cut(s) 369, 1417
Zsp2I ATGCAT 1 cut(s) 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.