RchiOBHm_Chr6g0309551

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003679
Physical Location & Seq
Forward (+)
67210622 .. 67212571
1950 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27836

Sequence Viewer

Length: 1950 bp
ATGCTTCCAGTCGCCGTGGAACCCCAGATCTGCCCGGAGGCAGTCCGGTGGTGGATGAACGGCGTCGCCAAGTATGAGAAGAAATCTGTGAAGGTGCGTGAGAAGGCCAGAAAACACATGTCGGCCATGGGCTGGAAATTTTGGCACGCAAGGCTTCAGGGAGATAAACCGGTCGAGTTTAGGTACCAATCTCCGGCCGGGAAATTATACTACTCGCTTAAAACGGCTTGCAAAGCCTGCGTTGACCTAGACCTCACTGGTTTCGAAAGCATCGGTTCAAATAGTTCTGATCCTAATTCTCCTATGGAAGAATCTAAGGAACCAAAATCTTGGATTAATTCCCCCGAAACGAAGCCAAAAAAGAGAGGAAGGAAGAAGAAGATTGATTTATTGATGGCAAAAAAGAGAGGAAGGAAGAGGAAAACTGATTTATTAACGTGTGATCCTAGTTATGATCCTATCGAAGATTGTAAGGAATCAAAATCCTGTACTAATTTCTCCCAATCAAAGCCAAAAAAGAGAGGAAGAAAGAGGAAGATTGATTTAGTAACGCCGGAGGAGGAACAAGAGAGTCTTGAAATTAGTCCTAAGCATAAACCAGGGAAGGTTCTTGCGGAGTTGAAGAGGCTTAGACTTGAAGACGAGCCAAAGTTACAGATTCGAAGTCCGAGAACAATTCTTTCTTCTTTGATAGACAACAAGGTTGTTATGCTACATGCTAAAGTGTACTACCGTGGGAGAAGCGGTGGCAGTCCACTGGCCACGGGCCAAGTTATTCGTGAGGGGATCATGTGTGATTGTTGCGCTAAGGTGTTTGCTCTCACTGCTTTTGAAGCACATGCTGGTAGCACAAATCATAGGCCGGGTGCCAATATCGTTTTCGAGGAAGATGGGAGGACGATTTCGGATTGCCAACGACTGATGAAGAGTTTTAAGGATGAGAAGAAGGTGGTGAAGAGTAGTAATAAGATTGACAAGACTGATGATTTATGCAGTGTGTGTCATAATGAGGGTGAGCTGATTCTGTGTGATAGATGTCCTTCTGCATTCCATACTAGCTGTTTGCGTTTGAGTGAAGTGTCAGATGGCGATTGGTTCTGCCCGGCGTGTTGTTGTGGAATCTGTGGCGGTGGAAAACTTGAACAAGGAACTATTCCTGGTGAGATTAGGAAATGTGATCAGTGTGAGCGTAAGTACCATGTTGGTTGCTTGAGAAACAATGAAGTGGTTTGTGAACAGAATTGGTTTTGTAGTAGTAAATGTCAAAATATTCTGTTTGGGCTGAAAGGGCTTTTGGGACGGCCAATTTTAGTGGGTGACAACAATCTCACTTGGACACTATTGAAGTCTTCCTCCACTAATAGGGCAGACTCCAGAGAAACTCAGAAAAAGCTCAGGTCGGCTCTTAATGTGTTGCATAAGTGTTTTGAGCCTTCTATTGATCCATACACACAAAGGGACCTCGTCGAAGACATTGTTTTAAATAGAGAGTCGAATCTGAGGCGCTTGAATTTCCGAGGGTTTTACACTGTGGTTTTAGAGAGGAATAAGGAAGTGATTTGTGCGGCTACTGTGAGGATCTATGGGGAAGTGGCAGAAATACCTCTTGTGGCCACTATGTTCCGACACAGGAGACTTGGGATGTGTCGGATTTTGATGAATGAGCTGGAAAAACAGCTCAAGAAGTTGGGAGTTGAGAGACTGGTTTTGCCTTCTGCTCCTGCTGCACTGGATACATGGACTAACACTTCGATTGGGTTTTCGAAGATGCCTGAAGCTGAAAAACAACAGTTTATCAATTATTTTTTCCTGTATTTTCAAGGCACTGTCATGTGTCATAAATTTTTGAAGCAGAGGAGTGCTACAACAGAAGCAACAATCCCAGAAGAAAACATGGAACTTGATGAGTCTTCAGGTGGCGTCTCTATAATAACACAGGCAGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140096 GO:0140097 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 Agenet Jas PHD

Protein Analysis

649

Amino Acids

73.54

Weight (kDa)

9.04

Isoelectric Point (pI)

52.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7028 PF22970 4 - 82 3.4e-24 Domain of unknown function (DUF7028)
TDBD PF16135 256 - 306 8.2e-19 Tify domain binding domain
PHD-1st_NSD PF23011 326 - 370 4.2e-06 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
PHD PF00628 331 - 370 2.9e-08 PHD-finger
IDM1_C PF23209 476 - 614 2.9e-50 Increased DNA methylation 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 183
AccB1I GGYRCC 2 cut(s) 183, 866
AccB7I CCANNNNNTGG 1 cut(s) 132
AciI CCGC 4 cut(s) 614, 744, 1128, 1565
AclWI GGATC 6 cut(s) 284, 437, 449, 794, 1436, 1586
AcoI YGGCCR 5 cut(s) 123, 195, 759, 1301, 1611
AcsI RAATTY 3 cut(s) 137, 1510, 1841
AcuI CTGAAG 3 cut(s) 140, 1794, 1896
AcyI GRCGYC 2 cut(s) 63, 1920
AfaI GTAC 4 cut(s) 185, 490, 728, 1196
AfiI CCNNNNNNNGG 3 cut(s) 132, 193, 1362
AflIII ACRYGT 2 cut(s) 117, 437
AgeI ACCGGT 1 cut(s) 169
AjnI CCWGG 2 cut(s) 598, 1156
AjuI GAANNNNNNNTTGG 4 cut(s) 863, 895, 1277, 1309
AluBI AGCT 6 cut(s) 1018, 1059, 1393, 1666, 1678, 1778
AluI AGCT 6 cut(s) 1018, 1059, 1393, 1666, 1678, 1778
Alw26I GTCTC 3 cut(s) 1627, 1693, 1927
AlwI GGATC 6 cut(s) 284, 437, 449, 794, 1436, 1586
AoxI GGCC 8 cut(s) 105, 123, 195, 759, 766, 860, 1301, 1611
ApeKI GCWGC 1 cut(s) 1724
ApoI RAATTY 3 cut(s) 137, 1510, 1841
ArsI GACNNNNNNTTYG 2 cut(s) 1732, 1764
AseI ATTAAT 1 cut(s) 336
AsiGI ACCGGT 1 cut(s) 169
Asp718I GGTACC 1 cut(s) 183
AspLEI GCGC 2 cut(s) 806, 1506
AspS9I GGNCC 2 cut(s) 766, 1459
AsuC2I CCSGG 4 cut(s) 35, 199, 864, 1103
AsuHPI GGTGA 4 cut(s) 964, 1025, 1172, 1328
AsuII TTCGAA 3 cut(s) 264, 661, 1763
AvaII GGWCC 1 cut(s) 1459
BalI TGGCCA 2 cut(s) 761, 1613
BanI GGYRCC 2 cut(s) 183, 866
BbsI GAAGAC 4 cut(s) 645, 1341, 1476, 1902
BbvI GCAGC 1 cut(s) 1711
BccI CCATC 3 cut(s) 388, 884, 1079
BceAI ACGGC 3 cut(s) 76, 240, 1316
BciT130I CCWGG 2 cut(s) 600, 1158
BciVI GTATCC 1 cut(s) 1726
BclI TGATCA 1 cut(s) 1177
BcnI CCSGG 4 cut(s) 35, 199, 864, 1103
BcoDI GTCTC 3 cut(s) 1627, 1693, 1927
BfaI CTAG 3 cut(s) 248, 447, 1056
BfoI RGCGCY 1 cut(s) 1507
BfuI GTATCC 1 cut(s) 1726
BglII AGATCT 1 cut(s) 27
BisI GCNGC 2 cut(s) 1566, 1725
BlsI GCNGC 2 cut(s) 1567, 1726
Bme1390I CCNGG 6 cut(s) 35, 199, 600, 864, 1103, 1158
Bme18I GGWCC 1 cut(s) 1459
BmgT120I GGNCC 2 cut(s) 766, 1459
BmiI GGNNCC 5 cut(s) 21, 185, 321, 868, 1460
BmrFI CCNGG 6 cut(s) 35, 199, 600, 864, 1103, 1158
BmsI GCATC 2 cut(s) 279, 1758
BpiI GAAGAC 4 cut(s) 645, 1341, 1476, 1902
BpmI CTGGAG 1 cut(s) 1357
Bpu10I CCTNAGC 3 cut(s) 588, 807, 1394
Bpu14I TTCGAA 3 cut(s) 264, 661, 1763
BpuEI CTTGAG 2 cut(s) 1231, 1664
BpuMI CCSGG 4 cut(s) 35, 199, 864, 1103
BsaHI GRCGYC 2 cut(s) 63, 1920
BsaJI CCNNGG 6 cut(s) 15, 126, 599, 733, 762, 1516
BsaWI WCCGGW 2 cut(s) 45, 169
BsaXI ACNNNNNCTCC 2 cut(s) 730, 760
Bsc4I CCNNNNNNNGG 3 cut(s) 132, 193, 1362
Bse118I RCCGGY 1 cut(s) 169
Bse1I ACTGG 5 cut(s) 8, 262, 762, 1707, 1734
BseBI CCWGG 2 cut(s) 600, 1158
BseDI CCNNGG 6 cut(s) 15, 126, 599, 733, 762, 1516
BseGI GGATG 3 cut(s) 60, 943, 1647
BseLI CCNNNNNNNGG 3 cut(s) 132, 193, 1362
BseMII CTCAG 3 cut(s) 1397, 1408, 1490
BseNI ACTGG 5 cut(s) 8, 262, 762, 1707, 1734
BseRI GAGGAG 2 cut(s) 572, 1870
BseX3I CGGCCG 1 cut(s) 195
BseXI GCAGC 1 cut(s) 1711
BsgI GTGCAG 1 cut(s) 1710
Bsh1285I CGRYCG 2 cut(s) 174, 198
BshFI GGCC 8 cut(s) 107, 125, 197, 761, 768, 862, 1303, 1613
BshNI GGYRCC 2 cut(s) 183, 866
BshTI ACCGGT 1 cut(s) 169
BsiEI CGRYCG 2 cut(s) 174, 198
BsiSI CCGG 8 cut(s) 35, 46, 170, 194, 198, 554, 863, 1103
BslFI GGGAC 2 cut(s) 1311, 1472
BslI CCNNNNNNNGG 3 cut(s) 132, 193, 1362
BsmAI GTCTC 3 cut(s) 1627, 1693, 1927
BsmBI CGTCTC 1 cut(s) 1927
BsmFI GGGAC 2 cut(s) 1311, 1472
BsmI GAATGC 1 cut(s) 1046
BsnI GGCC 8 cut(s) 107, 125, 197, 761, 768, 862, 1303, 1613
Bsp119I TTCGAA 3 cut(s) 264, 661, 1763
Bsp143I GATC 8 cut(s) 27, 289, 442, 454, 786, 1177, 1441, 1578
Bsp19I CCATGG 1 cut(s) 126
BspACI CCGC 4 cut(s) 614, 744, 1128, 1565
BspANI GGCC 8 cut(s) 107, 125, 197, 761, 768, 862, 1303, 1613
BspCNI CTCAG 3 cut(s) 1396, 1407, 1491
BspLI GGNNCC 5 cut(s) 21, 185, 321, 868, 1460
BspPI GGATC 6 cut(s) 284, 437, 449, 794, 1436, 1586
BspT104I TTCGAA 3 cut(s) 264, 661, 1763
BspT107I GGYRCC 2 cut(s) 183, 866
BsrFI RCCGGY 1 cut(s) 169
BsrI ACTGG 5 cut(s) 8, 262, 762, 1707, 1734
BssAI RCCGGY 1 cut(s) 169
BssECI CCNNGG 6 cut(s) 15, 126, 599, 733, 762, 1516
BssMI GATC 8 cut(s) 27, 289, 442, 454, 786, 1177, 1441, 1578
BssNI GRCGYC 2 cut(s) 63, 1920
BssT1I CCWWGG 1 cut(s) 126
Bst2UI CCWGG 2 cut(s) 600, 1158
Bst4CI ACNGT 5 cut(s) 734, 1531, 1573, 1791, 1828
Bst6I CTCTTC 4 cut(s) 410, 617, 920, 950
BstACI GRCGYC 2 cut(s) 63, 1920
BstAPI GCANNNNNTGC 1 cut(s) 237
BstBI TTCGAA 3 cut(s) 264, 661, 1763
BstC8I GCNNGC 3 cut(s) 147, 229, 238
BstDEI CTNAG 7 cut(s) 315, 588, 629, 807, 1383, 1394, 1499
BstDSI CCRYGG 4 cut(s) 15, 126, 733, 762
BstF5I GGATG 3 cut(s) 60, 943, 1647
BstH2I RGCGCY 1 cut(s) 1507
BstHHI GCGC 2 cut(s) 806, 1506
BstKTI GATC 8 cut(s) 30, 292, 445, 457, 789, 1180, 1444, 1581
BstMAI GTCTC 3 cut(s) 1627, 1693, 1927
BstMBI GATC 8 cut(s) 27, 289, 442, 454, 786, 1177, 1441, 1578
BstMCI CGRYCG 2 cut(s) 174, 198
BstMWI GCNNNNNNNGC 7 cut(s) 151, 233, 237, 824, 833, 1288, 1724
BstNI CCWGG 2 cut(s) 600, 1158
BstNSI RCATGY 3 cut(s) 121, 719, 842
BstSCI CCNGG 6 cut(s) 33, 197, 598, 862, 1101, 1156
BstV1I GCAGC 1 cut(s) 1711
BstV2I GAAGAC 4 cut(s) 645, 1341, 1476, 1902
BstX2I RGATCY 2 cut(s) 27, 1578
BstXI CCANNNNNNTGG 1 cut(s) 330
BstYI RGATCY 2 cut(s) 27, 1578
BstZI CGGCCG 1 cut(s) 195
BsuI GTATCC 1 cut(s) 1726
BsuRI GGCC 8 cut(s) 107, 125, 197, 761, 768, 862, 1303, 1613
BtgI CCRYGG 4 cut(s) 15, 126, 733, 762
BtsCI GGATG 3 cut(s) 60, 943, 1647
BtsI GCAGTG 2 cut(s) 822, 1000
BtsIMutI CAGTG 8 cut(s) 255, 755, 822, 1000, 1187, 1527, 1727, 1824
Cac8I GCNNGC 3 cut(s) 147, 229, 238
CfoI GCGC 2 cut(s) 806, 1506
Cfr10I RCCGGY 1 cut(s) 169
Cfr13I GGNCC 2 cut(s) 766, 1459
CseI GACGC 2 cut(s) 52, 1909
Csp6I GTAC 4 cut(s) 184, 489, 727, 1195
CspAI ACCGGT 1 cut(s) 169
CspCI CAANNNNNGTGG 2 cut(s) 1293, 1328
CviAII CATG 9 cut(s) 118, 127, 716, 790, 839, 1199, 1737, 1831, 1894
CviQI GTAC 4 cut(s) 184, 489, 727, 1195
DdeI CTNAG 7 cut(s) 315, 588, 629, 807, 1383, 1394, 1499
DpnI GATC 8 cut(s) 29, 291, 444, 456, 788, 1179, 1443, 1580
DpnII GATC 8 cut(s) 27, 289, 442, 454, 786, 1177, 1441, 1578
DraI TTTAAA 1 cut(s) 1482
EaeI YGGCCR 5 cut(s) 123, 195, 759, 1301, 1611
EagI CGGCCG 1 cut(s) 195
Eam1104I CTCTTC 4 cut(s) 410, 617, 920, 950
EarI CTCTTC 4 cut(s) 410, 617, 920, 950
EclXI CGGCCG 1 cut(s) 195
Eco130I CCWWGG 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 1459
Eco52I CGGCCG 1 cut(s) 195
Eco57I CTGAAG 3 cut(s) 140, 1794, 1896
EcoO109I RGGNCCY 1 cut(s) 1459
EcoRII CCWGG 2 cut(s) 598, 1156
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
Esp3I CGTCTC 1 cut(s) 1927
FaeI CATG 9 cut(s) 121, 130, 719, 793, 842, 1202, 1740, 1834, 1897
FalI AAGNNNNNCTT 2 cut(s) 558, 590
FaqI GGGAC 2 cut(s) 1311, 1472
FatI CATG 9 cut(s) 117, 126, 715, 789, 838, 1198, 1736, 1830, 1893
FbaI TGATCA 1 cut(s) 1177
Fnu4HI GCNGC 2 cut(s) 1566, 1725
FokI GGATG 3 cut(s) 67, 950, 1654
Fsp4HI GCNGC 2 cut(s) 1566, 1725
FspBI CTAG 3 cut(s) 248, 447, 1056
GlaI GCGC 2 cut(s) 805, 1505
GluI GCNGC 2 cut(s) 1566, 1725
GsuI CTGGAG 1 cut(s) 1357
HaeII RGCGCY 1 cut(s) 1507
HaeIII GGCC 8 cut(s) 107, 125, 197, 761, 768, 862, 1303, 1613
HapII CCGG 8 cut(s) 35, 46, 170, 194, 198, 554, 863, 1103
HgaI GACGC 2 cut(s) 52, 1909
HhaI GCGC 2 cut(s) 806, 1506
Hin1I GRCGYC 2 cut(s) 63, 1920
Hin1II CATG 9 cut(s) 121, 130, 719, 793, 842, 1202, 1740, 1834, 1897
Hin6I GCGC 2 cut(s) 804, 1504
HinP1I GCGC 2 cut(s) 804, 1504
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HpaII CCGG 8 cut(s) 35, 46, 170, 194, 198, 554, 863, 1103
HphI GGTGA 4 cut(s) 964, 1025, 1172, 1328
Hpy166II GTNNAC 4 cut(s) 244, 727, 755, 1235
Hpy188I TCNGA 9 cut(s) 289, 669, 907, 1084, 1386, 1500, 1517, 1625, 1650
Hpy188III TCNNGA 4 cut(s) 575, 779, 1374, 1681
Hpy8I GTNNAC 4 cut(s) 244, 727, 755, 1235
Hpy99I CGWCG 2 cut(s) 68, 1469
HpyAV CCTTC 9 cut(s) 85, 97, 363, 405, 598, 940, 1050, 1443, 1722
HpyCH4III ACNGT 5 cut(s) 734, 1531, 1573, 1791, 1828
HpyCH4IV ACGT 1 cut(s) 437
HpyCH4V TGCA 5 cut(s) 231, 993, 1046, 1417, 1727
HpyF10VI GCNNNNNNNGC 7 cut(s) 151, 233, 237, 824, 833, 1288, 1724
HpyF3I CTNAG 7 cut(s) 315, 588, 629, 807, 1383, 1394, 1499
HpySE526I ACGT 1 cut(s) 437
Hsp92I GRCGYC 2 cut(s) 63, 1920
Hsp92II CATG 9 cut(s) 121, 130, 719, 793, 842, 1202, 1740, 1834, 1897
HspAI GCGC 2 cut(s) 804, 1504
KpnI GGTACC 1 cut(s) 187
Ksp22I TGATCA 1 cut(s) 1177
Kzo9I GATC 8 cut(s) 27, 289, 442, 454, 786, 1177, 1441, 1578
LmnI GCTCC 1 cut(s) 1723
Lsp1109I GCAGC 1 cut(s) 1711
LweI GCATC 2 cut(s) 279, 1758
MaeI CTAG 3 cut(s) 248, 447, 1056
MaeII ACGT 1 cut(s) 437
MaeIII GTNAC 3 cut(s) 547, 651, 1316
MalI GATC 8 cut(s) 29, 291, 444, 456, 788, 1179, 1443, 1580
MboI GATC 8 cut(s) 27, 289, 442, 454, 786, 1177, 1441, 1578
MflI RGATCY 2 cut(s) 27, 1578
MlsI TGGCCA 2 cut(s) 761, 1613
MluNI TGGCCA 2 cut(s) 761, 1613
MlyI GAGTC 4 cut(s) 580, 1364, 1499, 1916
MmeI TCCRAC 2 cut(s) 1628, 1648
Mox20I TGGCCA 2 cut(s) 761, 1613
MscI TGGCCA 2 cut(s) 761, 1613
MseI TTAA 6 cut(s) 219, 336, 434, 933, 1407, 1481
MslI CAYNNNNRTG 1 cut(s) 1829
Msp20I TGGCCA 2 cut(s) 761, 1613
MspI CCGG 8 cut(s) 35, 46, 170, 194, 198, 554, 863, 1103
MspR9I CCNGG 6 cut(s) 35, 199, 600, 864, 1103, 1158
Mva1269I GAATGC 1 cut(s) 1046
MvaI CCWGG 2 cut(s) 600, 1158
MwoI GCNNNNNNNGC 7 cut(s) 151, 233, 237, 824, 833, 1288, 1724
NciI CCSGG 4 cut(s) 35, 199, 864, 1103
NcoI CCATGG 1 cut(s) 126
NdeII GATC 8 cut(s) 27, 289, 442, 454, 786, 1177, 1441, 1578
NlaIII CATG 9 cut(s) 121, 130, 719, 793, 842, 1202, 1740, 1834, 1897
NlaIV GGNNCC 5 cut(s) 21, 185, 321, 868, 1460
NmuCI GTSAC 1 cut(s) 1316
NspI RCATGY 3 cut(s) 121, 719, 842
NspV TTCGAA 3 cut(s) 264, 661, 1763
PciI ACATGT 1 cut(s) 117
PctI GAATGC 1 cut(s) 1046
PfeI GAWTC 6 cut(s) 311, 476, 658, 1021, 1119, 1495
PflFI GACNNNGTC 1 cut(s) 1463
PflMI CCANNNNNTGG 1 cut(s) 132
PinAI ACCGGT 1 cut(s) 169
PkrI GCNGC 2 cut(s) 1567, 1726
PleI GAGTC 4 cut(s) 579, 1364, 1498, 1915
PpsI GAGTC 4 cut(s) 579, 1364, 1498, 1915
PpuMI RGGWCCY 1 cut(s) 1459
PscI ACATGT 1 cut(s) 117
PshBI ATTAAT 1 cut(s) 336
Psp5II RGGWCCY 1 cut(s) 1459
Psp6I CCWGG 2 cut(s) 598, 1156
PspGI CCWGG 2 cut(s) 598, 1156
PspN4I GGNNCC 5 cut(s) 21, 185, 321, 868, 1460
PspPI GGNCC 2 cut(s) 766, 1459
PspPPI RGGWCCY 1 cut(s) 1459
PsuI RGATCY 2 cut(s) 27, 1578
PsyI GACNNNGTC 1 cut(s) 1463
RsaI GTAC 4 cut(s) 185, 490, 728, 1196
RsaNI GTAC 4 cut(s) 184, 489, 727, 1195
RseI CAYNNNNRTG 1 cut(s) 1829
SaqAI TTAA 6 cut(s) 219, 336, 434, 933, 1407, 1481
SatI GCNGC 2 cut(s) 1566, 1725
Sau3AI GATC 8 cut(s) 27, 289, 442, 454, 786, 1177, 1441, 1578
Sau96I GGNCC 2 cut(s) 766, 1459
SchI GAGTC 4 cut(s) 580, 1364, 1499, 1916
ScrFI CCNGG 6 cut(s) 35, 199, 600, 864, 1103, 1158
SfaNI GCATC 2 cut(s) 279, 1758
SfuI TTCGAA 3 cut(s) 264, 661, 1763
SinI GGWCC 1 cut(s) 1459
SmiMI CAYNNNNRTG 1 cut(s) 1829
SmlI CTYRAG 2 cut(s) 1210, 1679
SmoI CTYRAG 2 cut(s) 1210, 1679
SsiI CCGC 4 cut(s) 614, 744, 1128, 1565
SspI AATATT 1 cut(s) 1270
SspMI CTAG 3 cut(s) 248, 447, 1056
StyD4I CCNGG 6 cut(s) 33, 197, 598, 862, 1101, 1156
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 5 cut(s) 734, 1531, 1573, 1791, 1828
TaiI ACGT 1 cut(s) 440
TaqI TCGA 9 cut(s) 174, 264, 462, 661, 882, 1467, 1493, 1751, 1763
TatI WGTACW 2 cut(s) 488, 726
TauI GCSGC 1 cut(s) 1568
TfiI GAWTC 6 cut(s) 311, 476, 658, 1021, 1119, 1495
Tru1I TTAA 6 cut(s) 219, 336, 434, 933, 1407, 1481
Tru9I TTAA 6 cut(s) 219, 336, 434, 933, 1407, 1481
TscAI CASTG 8 cut(s) 262, 762, 829, 1000, 1187, 1534, 1734, 1831
TseFI GTSAC 1 cut(s) 1316
TseI GCWGC 1 cut(s) 1724
Tsp45I GTSAC 1 cut(s) 1316
TspDTI ATGAA 4 cut(s) 71, 938, 1236, 1673
TspRI CASTG 8 cut(s) 262, 762, 829, 1000, 1187, 1534, 1734, 1831
Tth111I GACNNNGTC 1 cut(s) 1463
Van91I CCANNNNNTGG 1 cut(s) 132
VpaK11BI GGWCC 1 cut(s) 1459
VspI ATTAAT 1 cut(s) 336
XapI RAATTY 3 cut(s) 137, 1510, 1841
XceI RCATGY 3 cut(s) 121, 719, 842
XspI CTAG 3 cut(s) 248, 447, 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.