Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042371.1

Orthogroup ID

OG0003679

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 745

Gene Structure 745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042371.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 745 bp

caagattttggggaaggctattgtggttggtcctgataatcttacttggactttgctcaagtcctcctcaacttgtgatgtggacaacttgaccaggaattacagacagcacaaattggctgtggaggtgatgcatgagtgttttgagcctactcaggacccctacacgagaagtgatgtggttgatgatgtgatttttaataggcagaagaagtttcgagggttttataccgcggttttggagaggaatgaggaggtgattagcgcagctacggtgagggtttacagtgagctgggggaagtgccgctagtggcgactaagtttaagcaccggagacttgggatgtgtcgaattttgatgagtgagcttgagaaacagcttgtgaaattgggaattgagaagctggttttgccttctgctaaagatgcactggaggcatggactggtacctcacttgggttttcaaagatgactgctgacgaaacattaccattgttgaagtatagattctggaatttccaagacactaccatgtgtcacaaggtattgaagaagcagacgactagtactgaatctgatgggtctgctggtgccatttctacagtaacgcaagtaggggacattgatgcaagtgaagaggcttgcattatggatattggttatgattatgatttcatgttggaggatgactctaaatttttgtcatggtacaaatctggatctaaaaagattgtggctctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140096 GO:0140097 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1 Acetyltransf_10 Agenet Jas PHD

Protein Analysis

247

Amino Acids

27.9

Weight (kDa)

5.9

Isoelectric Point (pI)

36.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63900
fragaria_vesca	FvH4_2g33101 FvH4_2g33110
malus_domestica	MD03G1066400.v1.1 MD08G1084100.v1.1 MD15G1070200.v1.1
prunus_persica	Prupe.1G423000_v2.0.a1
pyrus_communis	pycom08g06970
rosa_chinensis	RchiOBHm_Chr6g0309551 RchiOBHm_Chr6g0309571
rosa_laevigata	RLG00000010552 RLG00000010554
rosa_multiflora	Rmu_co8092108.1_g000001 Rmu_co8455997.1_g000001 Rmu_co8522085.1_g000002 Rmu_sc0007283.1_g000012 Rmu_sc0007283.1_g000014 Rmu_sc0024715.1_g000002 Rmu_sc0024715.1_g000003 Rmu_sc0030536.1_g000004 Rmu_sc0042371.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159310
rosa_rugosa	Rorug06G0372800 Rorug06G0372900
rosa_samantha	Rh6AG486200 Rh6AG486400 Rh6BG204300 Rh6BG495600 Rh6BG495800 Rh6CG500600 Rh6CG500700 Rh6DG486500 Rh6DG486600
rosa_wichuraiana	Rw6G042350 Rw6G042360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	447
AccB1I	GGYRCC	2 cut(s)	447, 591
AccII	CGCG	1 cut(s)	234
AciI	CCGC	3 cut(s)	232, 234, 306
AclWI	GGATC	1 cut(s)	728
AcsI	RAATTY	3 cut(s)	352, 515, 696
AfaI	GTAC	3 cut(s)	449, 569, 711
AfiI	CCNNNNNNNGG	1 cut(s)	457
AgsI	TTSAA	3 cut(s)	466, 500, 551
AhlI	ACTAGT	1 cut(s)	564
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	5 cut(s)	270, 293, 368, 380, 404
AluI	AGCT	5 cut(s)	270, 293, 368, 380, 404
Alw26I	GTCTC	1 cut(s)	329
AlwI	GGATC	1 cut(s)	728
ApeKI	GCWGC	1 cut(s)	267
ApoI	RAATTY	3 cut(s)	352, 515, 696
Asp718I	GGTACC	1 cut(s)	447
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	2 cut(s)	30, 158
AsuHPI	GGTGA	3 cut(s)	140, 269, 287
AvaII	GGWCC	2 cut(s)	30, 158
BanI	GGYRCC	2 cut(s)	447, 591
BauI	CACGAG	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	279
BccI	CCATC	1 cut(s)	573
BciT130I	CCWGG	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	329
BcuI	ACTAGT	1 cut(s)	564
BfaI	CTAG	2 cut(s)	309, 565
BfmI	CTRYAG	1 cut(s)	601
BisI	GCNGC	2 cut(s)	268, 306
BlsI	GCNGC	2 cut(s)	269, 307
BmcAI	AGTACT	1 cut(s)	569
Bme1390I	CCNGG	1 cut(s)	95
Bme18I	GGWCC	2 cut(s)	30, 158
BmgT120I	GGNCC	2 cut(s)	30, 158
BmiI	GGNNCC	3 cut(s)	160, 449, 593
BmrFI	CCNGG	1 cut(s)	95
BmsI	GCATC	3 cut(s)	121, 416, 617
BplI	GAGNNNNNCTC	2 cut(s)	675, 707
BpmI	CTGGAG	1 cut(s)	453
BpuEI	CTTGAG	2 cut(s)	42, 390
BsaJI	CCNNGG	1 cut(s)	232
BsaWI	WCCGGW	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
Bse1I	ACTGG	2 cut(s)	436, 449
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	2 cut(s)	349, 692
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	2 cut(s)	436, 449
BseRI	GAGGAG	2 cut(s)	56, 267
BseXI	GCAGC	1 cut(s)	279
BseYI	CCCAGC	1 cut(s)	293
Bsh1236I	CGCG	1 cut(s)	234
BshNI	GGYRCC	2 cut(s)	447, 591
BsiSI	CCGG	1 cut(s)	332
BslFI	GGGAC	1 cut(s)	633
BslI	CCNNNNNNNGG	1 cut(s)	457
BsmAI	GTCTC	1 cut(s)	329
BsmFI	GGGAC	1 cut(s)	633
Bsp143I	GATC	1 cut(s)	720
BspACI	CCGC	3 cut(s)	232, 234, 306
BspCNI	CTCAG	1 cut(s)	167
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	3 cut(s)	160, 449, 593
BspPI	GGATC	1 cut(s)	728
BspT107I	GGYRCC	2 cut(s)	447, 591
BsrI	ACTGG	2 cut(s)	436, 449
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	1 cut(s)	720
BssSI	CACGAG	1 cut(s)	167
Bst2BI	CACGAG	1 cut(s)	167
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	3 cut(s)	275, 288, 605
Bst6I	CTCTTC	1 cut(s)	631
BstC8I	GCNNGC	1 cut(s)	644
BstDEI	CTNAG	2 cut(s)	154, 319
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	2 cut(s)	349, 692
BstFNI	CGCG	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	1 cut(s)	723
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	1 cut(s)	720
BstMWI	GCNNNNNNNGC	3 cut(s)	410, 426, 435
BstNI	CCWGG	1 cut(s)	95
BstSCI	CCNGG	1 cut(s)	93
BstSFI	CTRYAG	1 cut(s)	601
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	720
BstYI	RGATCY	1 cut(s)	720
BtgI	CCRYGG	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	349, 692
BtsIMutI	CAGTG	2 cut(s)	293, 429
Cac8I	GCNNGC	1 cut(s)	644
CfoI	GCGC	1 cut(s)	267
Cfr13I	GGNCC	2 cut(s)	30, 158
Cfr42I	CCGCGG	1 cut(s)	235
Csp6I	GTAC	3 cut(s)	448, 568, 710
CviAII	CATG	5 cut(s)	135, 439, 533, 677, 706
CviQI	GTAC	3 cut(s)	448, 568, 710
DdeI	CTNAG	2 cut(s)	154, 319
DpnI	GATC	1 cut(s)	722
DpnII	GATC	1 cut(s)	720
Eam1104I	CTCTTC	1 cut(s)	631
EarI	CTCTTC	1 cut(s)	631
Eco47I	GGWCC	2 cut(s)	30, 158
EcoO109I	RGGNCCY	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	93
EcoT22I	ATGCAT	1 cut(s)	136
FaeI	CATG	5 cut(s)	138, 442, 536, 680, 709
FaqI	GGGAC	1 cut(s)	633
FatI	CATG	5 cut(s)	134, 438, 532, 676, 705
Fnu4HI	GCNGC	2 cut(s)	268, 306
FokI	GGATG	2 cut(s)	356, 699
Fsp4HI	GCNGC	2 cut(s)	268, 306
FspBI	CTAG	2 cut(s)	309, 565
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	2 cut(s)	268, 306
GsaI	CCCAGC	1 cut(s)	297
GsuI	CTGGAG	1 cut(s)	453
HapII	CCGG	1 cut(s)	332
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	5 cut(s)	138, 442, 536, 680, 709
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HinfI	GANTC	3 cut(s)	508, 573, 690
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	3 cut(s)	140, 269, 287
Hpy166II	GTNNAC	2 cut(s)	83, 284
Hpy188I	TCNGA	1 cut(s)	578
Hpy188III	TCNNGA	4 cut(s)	33, 156, 512, 718
Hpy8I	GTNNAC	2 cut(s)	83, 284
HpyAV	CCTTC	2 cut(s)	8, 424
HpyCH4III	ACNGT	3 cut(s)	275, 288, 605
HpyCH4V	TGCA	4 cut(s)	134, 429, 630, 646
HpyF10VI	GCNNNNNNNGC	3 cut(s)	410, 426, 435
HpyF3I	CTNAG	2 cut(s)	154, 319
Hsp92II	CATG	5 cut(s)	138, 442, 536, 680, 709
HspAI	GCGC	1 cut(s)	265
KpnI	GGTACC	1 cut(s)	451
KspI	CCGCGG	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	720
Lsp1109I	GCAGC	1 cut(s)	279
LweI	GCATC	3 cut(s)	121, 416, 617
MaeI	CTAG	2 cut(s)	309, 565
MaeIII	GTNAC	2 cut(s)	537, 605
MalI	GATC	1 cut(s)	722
MboI	GATC	1 cut(s)	720
MboII	GAAGA	3 cut(s)	221, 563, 648
MflI	RGATCY	1 cut(s)	720
MluCI	AATT	7 cut(s)	98, 114, 352, 387, 394, 515, 696
MlyI	GAGTC	1 cut(s)	684
MmeI	TCCRAC	1 cut(s)	661
Mph1103I	ATGCAT	1 cut(s)	136
MseI	TTAA	2 cut(s)	199, 325
MslI	CAYNNNNRTG	1 cut(s)	531
MspA1I	CMGCKG	1 cut(s)	234
MspI	CCGG	1 cut(s)	332
MspR9I	CCNGG	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	95
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	3 cut(s)	410, 426, 435
NdeII	GATC	1 cut(s)	720
NlaIII	CATG	5 cut(s)	138, 442, 536, 680, 709
NlaIV	GGNNCC	3 cut(s)	160, 449, 593
NmuCI	GTSAC	1 cut(s)	537
NsiI	ATGCAT	1 cut(s)	136
PfeI	GAWTC	2 cut(s)	508, 573
PkrI	GCNGC	2 cut(s)	269, 307
PleI	GAGTC	1 cut(s)	684
PpsI	GAGTC	1 cut(s)	684
PpuMI	RGGWCCY	1 cut(s)	158
Psp5II	RGGWCCY	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	93
PspFI	CCCAGC	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	3 cut(s)	160, 449, 593
PspPI	GGNCC	2 cut(s)	30, 158
PspPPI	RGGWCCY	1 cut(s)	158
PsuI	RGATCY	1 cut(s)	720
RsaI	GTAC	3 cut(s)	449, 569, 711
RsaNI	GTAC	3 cut(s)	448, 568, 710
RseI	CAYNNNNRTG	1 cut(s)	531
SacII	CCGCGG	1 cut(s)	235
SaqAI	TTAA	2 cut(s)	199, 325
SatI	GCNGC	2 cut(s)	268, 306
Sau3AI	GATC	1 cut(s)	720
Sau96I	GGNCC	2 cut(s)	30, 158
ScaI	AGTACT	1 cut(s)	569
SchI	GAGTC	1 cut(s)	684
ScrFI	CCNGG	1 cut(s)	95
SetI	ASST	9 cut(s)	130, 259, 272, 295, 370, 382, 406, 453, 547
SfaNI	GCATC	3 cut(s)	121, 416, 617
SfcI	CTRYAG	1 cut(s)	601
Sfr303I	CCGCGG	1 cut(s)	235
SgrBI	CCGCGG	1 cut(s)	235
SinI	GGWCC	2 cut(s)	30, 158
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	2 cut(s)	57, 369
SmoI	CTYRAG	2 cut(s)	57, 369
SpeI	ACTAGT	1 cut(s)	564
Sse9I	AATT	7 cut(s)	98, 114, 352, 387, 394, 515, 696
SsiI	CCGC	3 cut(s)	232, 234, 306
SspMI	CTAG	2 cut(s)	309, 565
StyD4I	CCNGG	1 cut(s)	93
TaaI	ACNGT	3 cut(s)	275, 288, 605
TaqI	TCGA	2 cut(s)	218, 350
TasI	AATT	7 cut(s)	98, 114, 352, 387, 394, 515, 696
TatI	WGTACW	1 cut(s)	567
TauI	GCSGC	1 cut(s)	308
TfiI	GAWTC	2 cut(s)	508, 573
Tru1I	TTAA	2 cut(s)	199, 325
Tru9I	TTAA	2 cut(s)	199, 325
TscAI	CASTG	2 cut(s)	293, 436
TseFI	GTSAC	1 cut(s)	537
TseI	GCWGC	1 cut(s)	267
Tsp45I	GTSAC	1 cut(s)	537
TspDTI	ATGAA	1 cut(s)	665
TspRI	CASTG	2 cut(s)	293, 436
VpaK11BI	GGWCC	2 cut(s)	30, 158
XapI	RAATTY	3 cut(s)	352, 515, 696
XspI	CTAG	2 cut(s)	309, 565
ZrmI	AGTACT	1 cut(s)	569
Zsp2I	ATGCAT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.