Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8092108.1

Orthogroup ID

OG0003679

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 594

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8092108.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 587 bp

gcctgttgttgacgccggtgacttggcagtagtactagtacctcctcctgaaaagcccaagagatcatcaaggaggaagcttgattcaataggggagccggttcggaatccgaaaccgaaaagaggcaaggttcttgcggatttgaagagagttagagatgaaaaggagaggaatagggatgtcgagatgaggtctagtgatgatgagaaccatgatgagtgcagtgtgtgttgctatggaggggaattggttctctgtgatggatgtccctctgcttttcatgctggctgcattggtttgggtgaggtgggagatggtgattggttctgcccatcttgctgctgtgggttttgcaacttaggaatattggaggatgatggtgttgcctcatgtgaccaatgcaggcagaggtaccacattgggtgtgcaagaaattcaggggaggctaagttgggtgtggatgggaaattgttttgcagtaggaaatgtgaaaatgtgtgtctgggaatcaacaagattttggggaaggctattgtggttggtcctgataatcttacttggactttgctcaagtcctcctcaactt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140096 GO:0140097 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1 Acetyltransf_10 Agenet Jas PHD

Protein Analysis

195

Amino Acids

21.09

Weight (kDa)

6.39

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63900
fragaria_vesca	FvH4_2g33101 FvH4_2g33110
malus_domestica	MD03G1066400.v1.1 MD08G1084100.v1.1 MD15G1070200.v1.1
prunus_persica	Prupe.1G423000_v2.0.a1
pyrus_communis	pycom08g06970
rosa_chinensis	RchiOBHm_Chr6g0309551 RchiOBHm_Chr6g0309571
rosa_laevigata	RLG00000010552 RLG00000010554
rosa_multiflora	Rmu_co8092108.1_g000001 Rmu_co8455997.1_g000001 Rmu_co8522085.1_g000002 Rmu_sc0007283.1_g000012 Rmu_sc0007283.1_g000014 Rmu_sc0024715.1_g000002 Rmu_sc0024715.1_g000003 Rmu_sc0030536.1_g000004 Rmu_sc0042371.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159310
rosa_rugosa	Rorug06G0372800 Rorug06G0372900
rosa_samantha	Rh6AG486200 Rh6AG486400 Rh6BG204300 Rh6BG495600 Rh6BG495800 Rh6CG500600 Rh6CG500700 Rh6DG486500 Rh6DG486600
rosa_wichuraiana	Rw6G042350 Rw6G042360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	412
AccB1I	GGYRCC	1 cut(s)	412
AciI	CCGC	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	434
AcyI	GRCGYC	1 cut(s)	13
AfaI	GTAC	3 cut(s)	34, 40, 414
AfiI	CCNNNNNNNGG	1 cut(s)	123
AgsI	TTSAA	2 cut(s)	88, 146
AhlI	ACTAGT	1 cut(s)	35
AluBI	AGCT	1 cut(s)	80
AluI	AGCT	1 cut(s)	80
ApeKI	GCWGC	2 cut(s)	289, 340
ApoI	RAATTY	1 cut(s)	434
Asp700I	GAANNNNTTC	1 cut(s)	250
Asp718I	GGTACC	1 cut(s)	412
AspS9I	GGNCC	1 cut(s)	543
AsuHPI	GGTGA	3 cut(s)	30, 315, 330
AvaII	GGWCC	1 cut(s)	543
BanI	GGYRCC	1 cut(s)	412
BbvI	GCAGC	2 cut(s)	276, 327
BccI	CCATC	5 cut(s)	255, 309, 341, 372, 456
BcuI	ACTAGT	1 cut(s)	35
BfaI	CTAG	2 cut(s)	36, 196
BisI	GCNGC	2 cut(s)	290, 341
BlsI	GCNGC	2 cut(s)	291, 342
BmcAI	AGTACT	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	543
BmgT120I	GGNCC	1 cut(s)	543
BmiI	GGNNCC	2 cut(s)	97, 414
BpuEI	CTTGAG	1 cut(s)	555
BsaHI	GRCGYC	1 cut(s)	13
BsaXI	ACNNNNNCTCC	2 cut(s)	435, 465
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse118I	RCCGGY	2 cut(s)	15, 98
BseGI	GGATG	4 cut(s)	185, 270, 380, 467
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseRI	GAGGAG	2 cut(s)	34, 569
BseXI	GCAGC	2 cut(s)	276, 327
BsgI	GTGCAG	1 cut(s)	242
BshNI	GGYRCC	1 cut(s)	412
BsiSI	CCGG	2 cut(s)	16, 99
BslFI	GGGAC	1 cut(s)	253
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmFI	GGGAC	1 cut(s)	253
Bsp143I	GATC	1 cut(s)	63
BspACI	CCGC	1 cut(s)	138
BspLI	GGNNCC	2 cut(s)	97, 414
BspT107I	GGYRCC	1 cut(s)	412
BsrFI	RCCGGY	2 cut(s)	15, 98
BssAI	RCCGGY	2 cut(s)	15, 98
BssMI	GATC	1 cut(s)	63
BssNI	GRCGYC	1 cut(s)	13
Bst6I	CTCTTC	1 cut(s)	141
BstACI	GRCGYC	1 cut(s)	13
BstC8I	GCNNGC	2 cut(s)	287, 405
BstDEI	CTNAG	2 cut(s)	359, 448
BstF5I	GGATG	4 cut(s)	185, 270, 380, 467
BstKTI	GATC	1 cut(s)	66
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	2 cut(s)	282, 337
BstV1I	GCAGC	2 cut(s)	276, 327
BtsCI	GGATG	4 cut(s)	185, 270, 380, 467
BtsI	GCAGTG	1 cut(s)	230
BtsIMutI	CAGTG	1 cut(s)	230
Cac8I	GCNNGC	2 cut(s)	287, 405
Cfr10I	RCCGGY	2 cut(s)	15, 98
Cfr13I	GGNCC	1 cut(s)	543
CseI	GACGC	1 cut(s)	21
Csp6I	GTAC	3 cut(s)	33, 39, 413
CviAII	CATG	3 cut(s)	213, 282, 391
CviJI	RGCY	6 cut(s)	56, 80, 98, 289, 447, 531
CviKI_1	RGCY	6 cut(s)	56, 80, 98, 289, 447, 531
CviQI	GTAC	3 cut(s)	33, 39, 413
DdeI	CTNAG	2 cut(s)	359, 448
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	543
FaeI	CATG	3 cut(s)	216, 285, 394
FaiI	YATR	4 cut(s)	214, 238, 283, 392
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	3 cut(s)	212, 281, 390
Fnu4HI	GCNGC	2 cut(s)	290, 341
FokI	GGATG	4 cut(s)	192, 277, 387, 474
Fsp4HI	GCNGC	2 cut(s)	290, 341
FspBI	CTAG	2 cut(s)	36, 196
GluI	GCNGC	2 cut(s)	290, 341
HapII	CCGG	2 cut(s)	16, 99
HgaI	GACGC	1 cut(s)	21
Hin1I	GRCGYC	1 cut(s)	13
Hin1II	CATG	3 cut(s)	216, 285, 394
HincII	GTYRAC	1 cut(s)	11
HindII	GTYRAC	1 cut(s)	11
HindIII	AAGCTT	1 cut(s)	78
HinfI	GANTC	3 cut(s)	84, 107, 508
HpaII	CCGG	2 cut(s)	16, 99
HphI	GGTGA	3 cut(s)	30, 315, 330
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	2 cut(s)	106, 112
Hpy188III	TCNNGA	3 cut(s)	48, 185, 546
Hpy8I	GTNNAC	1 cut(s)	11
HpyAV	CCTTC	1 cut(s)	521
HpyCH4V	TGCA	6 cut(s)	223, 292, 355, 403, 429, 478
HpyF10VI	GCNNNNNNNGC	2 cut(s)	282, 337
HpyF3I	CTNAG	2 cut(s)	359, 448
Hsp92I	GRCGYC	1 cut(s)	13
Hsp92II	CATG	3 cut(s)	216, 285, 394
KpnI	GGTACC	1 cut(s)	416
Kzo9I	GATC	1 cut(s)	63
LmnI	GCTCC	1 cut(s)	95
LpnPI	CCDG	9 cut(s)	16, 29, 61, 112, 271, 389, 424, 489, 559
Lsp1109I	GCAGC	2 cut(s)	276, 327
MaeI	CTAG	2 cut(s)	36, 196
MaeIII	GTNAC	2 cut(s)	18, 393
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	1 cut(s)	158
MluCI	AATT	3 cut(s)	246, 434, 468
MroXI	GAANNNNTTC	1 cut(s)	250
MspI	CCGG	2 cut(s)	16, 99
MwoI	GCNNNNNNNGC	2 cut(s)	282, 337
NdeII	GATC	1 cut(s)	63
NlaIII	CATG	3 cut(s)	216, 285, 394
NlaIV	GGNNCC	2 cut(s)	97, 414
NmuCI	GTSAC	2 cut(s)	18, 393
PdmI	GAANNNNTTC	1 cut(s)	250
PfeI	GAWTC	3 cut(s)	84, 107, 508
PkrI	GCNGC	2 cut(s)	291, 342
PspN4I	GGNNCC	2 cut(s)	97, 414
PspPI	GGNCC	1 cut(s)	543
RsaI	GTAC	3 cut(s)	34, 40, 414
RsaNI	GTAC	3 cut(s)	33, 39, 413
SatI	GCNGC	2 cut(s)	290, 341
Sau3AI	GATC	1 cut(s)	63
Sau96I	GGNCC	1 cut(s)	543
ScaI	AGTACT	1 cut(s)	34
SetI	ASST	6 cut(s)	44, 82, 133, 195, 310, 414
SgrAI	CRCCGGYG	1 cut(s)	15
SinI	GGWCC	1 cut(s)	543
SmlI	CTYRAG	1 cut(s)	570
SmoI	CTYRAG	1 cut(s)	570
SpeI	ACTAGT	1 cut(s)	35
Sse9I	AATT	3 cut(s)	246, 434, 468
SsiI	CCGC	1 cut(s)	138
SspI	AATATT	1 cut(s)	367
SspMI	CTAG	2 cut(s)	36, 196
TaqI	TCGA	1 cut(s)	184
TasI	AATT	3 cut(s)	246, 434, 468
TatI	WGTACW	1 cut(s)	32
TfiI	GAWTC	3 cut(s)	84, 107, 508
TscAI	CASTG	1 cut(s)	230
TseFI	GTSAC	2 cut(s)	18, 393
TseI	GCWGC	2 cut(s)	289, 340
Tsp45I	GTSAC	2 cut(s)	18, 393
TspDTI	ATGAA	2 cut(s)	175, 270
TspRI	CASTG	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	543
XapI	RAATTY	1 cut(s)	434
XmnI	GAANNNNTTC	1 cut(s)	250
XspI	CTAG	2 cut(s)	36, 196
ZrmI	AGTACT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.