MD03G1160600.v1.1

Outer envelope protein 61

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
19275886 .. 19282514
6629 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1160600.v1.1.491

Sequence Viewer

Length: 1746 bp
ATGTTTAACGGAATGAATATGATGGATCCCGAGTTGATGAGGCTCGCTCAGGAGCAGATGAGTCGCATGTCCCCCGCCGAGTTCGCCAGGATCCAACAGCAGATGATGGCTAATCCAGAATTGATGAAGATGGCCTCGGAGGGCATGAAGAACATGAGGCCTGAAGACTTGAAACAGGCTGCAGAGCAGTTGAAGCATACACGTCCGGAAGAGATAGCTGAGATTGGTGAGAAGATGGCTAGTGCCTCGCCTGAAGAGATAGCAGCTATGCGTACCCGTGTTGATGCCCAGATCTCTTATGAACTCAAAGGAGCTCAGATGCTGAAGGATCAGGGAAATGCACTTCACAGCCAGGGCAAGTTCAATGAAGCCATGCAGAAATACTTGCTTGCAAAGAAGAACCTAAGTGGGATTCCATCTTCTAAAGGCAGGCCGCTTCTGATGGCATGCTCACTCAATTTAATGTCTTGTTACTTGAAAACAAGGCAGTATGACGAGTGTATAAAAGAAGGTTCTGAGGTTTTGGCATATGACGCAGACAATATTAAGGCTCTTTACCGTAGAGGTCAAGCGTATAAAGAAATAGGTCAATTTGAAGGTGCTGTCTCTGATCTGAGCAAGGCACATGAAGTTTCACCTGATGATGAAACTATTTCAGATGTTTTAAGGGATGCCAAAGAAAATTTGCGTAAAGAGGGTGGTTCGTCTGGACCAAGAAGAGGATTAGTAATTGAAGAACTAACTGAAGAAGTTGAGACTGTGTCATCTGCCAACCATAAAAGGTCTTCTACAGAGTATTCTGCGGCACAACCAAAGGAAACTAGCAATGCTTCTCGGACTCAAAGCGCATCAAACACTGAGTTTCTGTCAACCAATGCAGACCGTTTGCAGGATTTTAAAAGTGACCCAGAAGCTATCAGATCGTTCCAGAATTTCATTTCAAATGCTGATCCTAACACTCTGGCTGCTTTGAATCCTGGAAACTCCGAAGAGGTTCCTGCTGACATGTTTAAGACTGCCTCAAACATGATCAGCAAAATGTCACCTGAAGAACTTCAAAAAATGCTTGAATTGGCTTCCAGTTCCAATTTCAACAATTTTAATCCTGGATCGGTTCCTCCAAATGTCTCACCAGATATGCTTAAAACTGCATCTGATATGATGAGTAAAATGCCACCGGAGGAGCTACAGAAAATGTTTGGAGTAGCATCTTCTTTGAATGGGAGAGGTTCATCTTCAACACAAGGACCAGTCACTGGTAACAGAAGAAGTTCGTCAGATTATTCAGAAAGCAGTGAGAATTCTGCAGTAAATGCACCTCAGGATATGGGTGAAACTAGCTCTCAAGGAATATTTCCTAATTTTAGGAGTTCTCCTCAGTCGAGCTTCCCTGCCTCTGCTGGTGATTTGCAAGAACAAATGAGGACCCAGATGAAAGATCCTGCAATGCAGCAGATGTTCTCATCAATGATTAAAAATATGAGCCCCGACATGATGGCAAACATGGGCGAGCAGTTTGGTTTCAAGCTTTCTCGGGAAGAAGCTGCAAAAGCTCAGCAAGCAATGTCGTCTTTGTCACCGCAGGACCTGGACAGAATGATGAAATGGGCAGATAGGATTCAAAGAGGAGTGGATGGTGCAAAGAAGGTGAAAAATTGGCTACTAGGCAGATCCGGTCTGATTTTGGCAATATGCATGCTAGTTATAGCAGTAGTGCTTCATCGTTTGGGCTACATCGGTGGTTAG

Protein Analysis

582

Amino Acids

64.02

Weight (kDa)

5.46

Isoelectric Point (pI)

62.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_1 PF00515 183 - 215 6.6e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1256
AccIII TCCGGA 1 cut(s) 205
AciI CCGC 4 cut(s) 75, 434, 803, 1580
AclWI GGATC 9 cut(s) 20, 33, 85, 98, 336, 944, 1117, 1433, 1665
AcsI RAATTY 3 cut(s) 682, 931, 1300
AcuI CTGAAG 5 cut(s) 183, 273, 344, 765, 1068
AfaI GTAC 1 cut(s) 274
AfiI CCNNNNNNNGG 3 cut(s) 719, 889, 1256
AflIII ACRYGT 2 cut(s) 200, 1005
AjiI CACGTC 1 cut(s) 203
AjnI CCWGG 5 cut(s) 86, 351, 976, 1105, 1587
Alw21I GWGCWC 1 cut(s) 316
Alw26I GTCTC 3 cut(s) 610, 749, 1132
AlwI GGATC 9 cut(s) 20, 33, 85, 98, 336, 944, 1117, 1433, 1665
AlwNI CAGNNNCTG 3 cut(s) 322, 1256, 1588
Ama87I CYCGRG 2 cut(s) 29, 1533
Aor13HI TCCGGA 1 cut(s) 205
AoxI GGCC 3 cut(s) 132, 158, 431
ApeKI GCWGC 5 cut(s) 179, 263, 965, 1450, 1544
ApoI RAATTY 3 cut(s) 682, 931, 1300
Asp700I GAANNNNTTC 3 cut(s) 993, 1053, 1270
AspLEI GCGC 1 cut(s) 848
AspS9I GGNCC 4 cut(s) 710, 1247, 1425, 1585
AsuHPI GGTGA 8 cut(s) 239, 627, 1035, 1122, 1343, 1415, 1569, 1660
AvaI CYCGRG 2 cut(s) 29, 1533
AvaII GGWCC 4 cut(s) 710, 1247, 1425, 1585
AxyI CCTNAGG 1 cut(s) 1320
BamHI GGATCC 2 cut(s) 25, 90
BanII GRGCYC 2 cut(s) 316, 1487
BbsI GAAGAC 2 cut(s) 171, 777
Bbv12I GWGCWC 1 cut(s) 316
BbvI GCAGC 5 cut(s) 166, 275, 952, 1462, 1531
BccI CCATC 8 cut(s) 16, 100, 124, 229, 424, 436, 1489, 1628
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BciT130I CCWGG 5 cut(s) 88, 353, 978, 1107, 1589
BclI TGATCA 1 cut(s) 1029
BcoDI GTCTC 3 cut(s) 610, 749, 1132
BfaI CTAG 5 cut(s) 240, 822, 1338, 1664, 1700
BfmI CTRYAG 4 cut(s) 180, 789, 1187, 1305
BglII AGATCT 1 cut(s) 291
BisI GCNGC 7 cut(s) 180, 264, 434, 804, 966, 1451, 1545
BlpI GCTNAGC 1 cut(s) 1554
BlsI GCNGC 7 cut(s) 181, 265, 435, 805, 967, 1452, 1546
Bme1390I CCNGG 5 cut(s) 88, 353, 978, 1107, 1589
Bme18I GGWCC 4 cut(s) 710, 1247, 1425, 1585
BmeT110I CYCGRG 2 cut(s) 29, 1533
BmgBI CACGTC 1 cut(s) 203
BmgT120I GGNCC 4 cut(s) 710, 1247, 1425, 1585
BmiI GGNNCC 5 cut(s) 27, 92, 996, 1116, 1427
BmrFI CCNGG 5 cut(s) 88, 353, 978, 1107, 1589
BmsI GCATC 6 cut(s) 274, 309, 661, 857, 1160, 1217
BpiI GAAGAC 2 cut(s) 171, 777
BplI GAGNNNNNCTC 4 cut(s) 31, 63, 1360, 1392
Bpu10I CCTNAGC 1 cut(s) 48
Bpu1102I GCTNAGC 1 cut(s) 1554
BpuEI CTTGAG 1 cut(s) 1329
BsaJI CCNNGG 2 cut(s) 135, 352
BsaWI WCCGGW 3 cut(s) 205, 1177, 1673
Bsc4I CCNNNNNNNGG 3 cut(s) 719, 889, 1256
Bse1I ACTGG 3 cut(s) 1080, 1250, 1261
Bse21I CCTNAGG 1 cut(s) 1320
Bse3DI GCAATG 3 cut(s) 832, 1452, 1569
BseAI TCCGGA 1 cut(s) 205
BseBI CCWGG 5 cut(s) 88, 353, 978, 1107, 1589
BseDI CCNNGG 2 cut(s) 135, 352
BseGI GGATG 2 cut(s) 676, 1639
BseLI CCNNNNNNNGG 3 cut(s) 719, 889, 1256
BseMI GCAATG 3 cut(s) 832, 1452, 1569
BseMII CTCAG 9 cut(s) 62, 210, 329, 507, 605, 849, 1334, 1391, 1568
BseNI ACTGG 3 cut(s) 1080, 1250, 1261
BseRI GAGGAG 3 cut(s) 1196, 1365, 1641
BseXI GCAGC 5 cut(s) 166, 275, 952, 1462, 1531
BshFI GGCC 3 cut(s) 134, 160, 433
BsiHKAI GWGCWC 1 cut(s) 316
BsiHKCI CYCGRG 2 cut(s) 29, 1533
BsiSI CCGG 3 cut(s) 206, 1178, 1674
BslFI GGGAC 1 cut(s) 55
BslI CCNNNNNNNGG 3 cut(s) 719, 889, 1256
BsmAI GTCTC 3 cut(s) 610, 749, 1132
BsmFI GGGAC 1 cut(s) 55
BsnI GGCC 3 cut(s) 134, 160, 433
BsoBI CYCGRG 2 cut(s) 29, 1533
Bsp1286I GDGCHC 2 cut(s) 316, 1487
Bsp13I TCCGGA 1 cut(s) 205
Bsp1720I GCTNAGC 1 cut(s) 1554
BspACI CCGC 4 cut(s) 75, 434, 803, 1580
BspANI GGCC 3 cut(s) 134, 160, 433
BspCNI CTCAG 9 cut(s) 61, 211, 328, 508, 606, 850, 1333, 1390, 1567
BspEI TCCGGA 1 cut(s) 205
BspLI GGNNCC 5 cut(s) 27, 92, 996, 1116, 1427
BspMAI CTGCAG 2 cut(s) 184, 1309
BspPI GGATC 9 cut(s) 20, 33, 85, 98, 336, 944, 1117, 1433, 1665
BsrDI GCAATG 3 cut(s) 832, 1452, 1569
BsrI ACTGG 3 cut(s) 1080, 1250, 1261
BssECI CCNNGG 2 cut(s) 135, 352
Bst2UI CCWGG 5 cut(s) 88, 353, 978, 1107, 1589
Bst4CI ACNGT 3 cut(s) 560, 760, 884
Bst6I CTCTTC 4 cut(s) 204, 249, 712, 984
BstAPI GCANNNNNTGC 1 cut(s) 1313
BstC8I GCNNGC 7 cut(s) 45, 390, 431, 448, 1511, 1560, 1697
BstF5I GGATG 2 cut(s) 676, 1639
BstHHI GCGC 1 cut(s) 848
BstMAI GTCTC 3 cut(s) 610, 749, 1132
BstMWI GCNNNNNNNGC 6 cut(s) 83, 193, 533, 1313, 1550, 1559
BstNI CCWGG 5 cut(s) 88, 353, 978, 1107, 1589
BstNSI RCATGY 4 cut(s) 70, 450, 1009, 1699
BstSCI CCNGG 5 cut(s) 86, 351, 976, 1105, 1587
BstSFI CTRYAG 4 cut(s) 180, 789, 1187, 1305
BstV1I GCAGC 5 cut(s) 166, 275, 952, 1462, 1531
BstV2I GAAGAC 2 cut(s) 171, 777
BstX2I RGATCY 5 cut(s) 25, 90, 291, 1438, 1670
BstYI RGATCY 5 cut(s) 25, 90, 291, 1438, 1670
Bsu36I CCTNAGG 1 cut(s) 1320
BsuRI GGCC 3 cut(s) 134, 160, 433
BtrI CACGTC 1 cut(s) 203
BtsCI GGATG 2 cut(s) 676, 1639
BtsI GCAGTG 1 cut(s) 1300
BtsIMutI CAGTG 3 cut(s) 855, 1254, 1300
Cac8I GCNNGC 7 cut(s) 45, 390, 431, 448, 1511, 1560, 1697
CaiI CAGNNNCTG 3 cut(s) 322, 1256, 1588
CfoI GCGC 1 cut(s) 848
Cfr13I GGNCC 4 cut(s) 710, 1247, 1425, 1585
CseI GACGC 1 cut(s) 542
Csp6I GTAC 1 cut(s) 273
CviQI GTAC 1 cut(s) 273
DraI TTTAAA 1 cut(s) 898
Eam1104I CTCTTC 4 cut(s) 204, 249, 712, 984
EarI CTCTTC 4 cut(s) 204, 249, 712, 984
Ecl136II GAGCTC 1 cut(s) 314
Eco147I AGGCCT 1 cut(s) 160
Eco24I GRGCYC 2 cut(s) 316, 1487
Eco47I GGWCC 4 cut(s) 710, 1247, 1425, 1585
Eco53kI GAGCTC 1 cut(s) 314
Eco57I CTGAAG 5 cut(s) 183, 273, 344, 765, 1068
Eco81I CCTNAGG 1 cut(s) 1320
Eco88I CYCGRG 2 cut(s) 29, 1533
EcoICRI GAGCTC 1 cut(s) 314
EcoO109I RGGNCCY 2 cut(s) 1425, 1585
EcoRI GAATTC 1 cut(s) 1300
EcoRII CCWGG 5 cut(s) 86, 351, 976, 1105, 1587
EcoT22I ATGCAT 1 cut(s) 1697
EcoT38I GRGCYC 2 cut(s) 316, 1487
FaqI GGGAC 1 cut(s) 55
FauI CCCGC 1 cut(s) 82
FauNDI CATATG 1 cut(s) 529
FbaI TGATCA 1 cut(s) 1029
Fnu4HI GCNGC 7 cut(s) 180, 264, 434, 804, 966, 1451, 1545
FokI GGATG 2 cut(s) 683, 1646
FriOI GRGCYC 2 cut(s) 316, 1487
Fsp4HI GCNGC 7 cut(s) 180, 264, 434, 804, 966, 1451, 1545
FspBI CTAG 5 cut(s) 240, 822, 1338, 1664, 1700
GlaI GCGC 1 cut(s) 847
GluI GCNGC 7 cut(s) 180, 264, 434, 804, 966, 1451, 1545
HaeIII GGCC 3 cut(s) 134, 160, 433
HapII CCGG 3 cut(s) 206, 1178, 1674
HgaI GACGC 1 cut(s) 542
HhaI GCGC 1 cut(s) 848
Hin6I GCGC 1 cut(s) 846
HinP1I GCGC 1 cut(s) 846
HincII GTYRAC 1 cut(s) 870
HindII GTYRAC 1 cut(s) 870
HindIII AAGCTT 1 cut(s) 1526
HinfI GANTC 5 cut(s) 61, 412, 838, 973, 1618
HpaII CCGG 3 cut(s) 206, 1178, 1674
HphI GGTGA 8 cut(s) 239, 627, 1035, 1122, 1343, 1415, 1569, 1660
Hpy166II GTNNAC 1 cut(s) 870
Hpy188III TCNNGA 8 cut(s) 29, 50, 116, 206, 708, 928, 1322, 1535
Hpy8I GTNNAC 1 cut(s) 870
HpyAV CCTTC 4 cut(s) 319, 503, 590, 1639
HpyCH4III ACNGT 3 cut(s) 560, 760, 884
HpyCH4IV ACGT 1 cut(s) 202
HpyF10VI GCNNNNNNNGC 6 cut(s) 83, 193, 533, 1313, 1550, 1559
HpySE526I ACGT 1 cut(s) 202
HspAI GCGC 1 cut(s) 846
Kpn2I TCCGGA 1 cut(s) 205
Ksp22I TGATCA 1 cut(s) 1029
LmnI GCTCC 3 cut(s) 52, 311, 1183
Lsp1109I GCAGC 5 cut(s) 166, 275, 952, 1462, 1531
LweI GCATC 6 cut(s) 274, 309, 661, 857, 1160, 1217
MaeI CTAG 5 cut(s) 240, 822, 1338, 1664, 1700
MaeII ACGT 1 cut(s) 202
MaeIII GTNAC 6 cut(s) 470, 902, 1041, 1252, 1259, 1575
MflI RGATCY 5 cut(s) 25, 90, 291, 1438, 1670
MhlI GDGCHC 2 cut(s) 316, 1487
MlyI GAGTC 2 cut(s) 70, 832
MmeI TCCRAC 1 cut(s) 118
Mph1103I ATGCAT 1 cut(s) 1697
MroI TCCGGA 1 cut(s) 205
MroXI GAANNNNTTC 3 cut(s) 993, 1053, 1270
MseI TTAA 9 cut(s) 6, 461, 546, 665, 897, 1011, 1101, 1143, 1473
MspI CCGG 3 cut(s) 206, 1178, 1674
MspR9I CCNGG 5 cut(s) 88, 353, 978, 1107, 1589
MvaI CCWGG 5 cut(s) 88, 353, 978, 1107, 1589
MwoI GCNNNNNNNGC 6 cut(s) 83, 193, 533, 1313, 1550, 1559
NdeI CATATG 1 cut(s) 529
NlaIV GGNNCC 5 cut(s) 27, 92, 996, 1116, 1427
NmeAIII GCCGAG 1 cut(s) 103
NmuCI GTSAC 4 cut(s) 902, 1041, 1252, 1575
NsiI ATGCAT 1 cut(s) 1697
NspI RCATGY 4 cut(s) 70, 450, 1009, 1699
PaeI GCATGC 2 cut(s) 450, 1699
PceI AGGCCT 1 cut(s) 160
PciI ACATGT 1 cut(s) 1005
PdmI GAANNNNTTC 3 cut(s) 993, 1053, 1270
PfeI GAWTC 3 cut(s) 412, 973, 1618
PflFI GACNNNGTC 1 cut(s) 760
PflMI CCANNNNNTGG 1 cut(s) 1256
PfoI TCCNGGA 2 cut(s) 976, 1105
PkrI GCNGC 7 cut(s) 181, 265, 435, 805, 967, 1452, 1546
PleI GAGTC 2 cut(s) 69, 832
PpsI GAGTC 2 cut(s) 69, 832
PpuMI RGGWCCY 2 cut(s) 1425, 1585
PscI ACATGT 1 cut(s) 1005
Psp124BI GAGCTC 1 cut(s) 316
Psp5II RGGWCCY 2 cut(s) 1425, 1585
Psp6I CCWGG 5 cut(s) 86, 351, 976, 1105, 1587
PspGI CCWGG 5 cut(s) 86, 351, 976, 1105, 1587
PspN4I GGNNCC 5 cut(s) 27, 92, 996, 1116, 1427
PspPI GGNCC 4 cut(s) 710, 1247, 1425, 1585
PspPPI RGGWCCY 2 cut(s) 1425, 1585
PstI CTGCAG 2 cut(s) 184, 1309
PstNI CAGNNNCTG 3 cut(s) 322, 1256, 1588
PsuI RGATCY 5 cut(s) 25, 90, 291, 1438, 1670
PsyI GACNNNGTC 1 cut(s) 760
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
SacI GAGCTC 1 cut(s) 316
SaqAI TTAA 9 cut(s) 6, 461, 546, 665, 897, 1011, 1101, 1143, 1473
SatI GCNGC 7 cut(s) 180, 264, 434, 804, 966, 1451, 1545
Sau96I GGNCC 4 cut(s) 710, 1247, 1425, 1585
SchI GAGTC 2 cut(s) 70, 832
ScrFI CCNGG 5 cut(s) 88, 353, 978, 1107, 1589
SduI GDGCHC 2 cut(s) 316, 1487
SfaNI GCATC 6 cut(s) 274, 309, 661, 857, 1160, 1217
SfcI CTRYAG 4 cut(s) 180, 789, 1187, 1305
SinI GGWCC 4 cut(s) 710, 1247, 1425, 1585
SmlI CTYRAG 1 cut(s) 1344
SmoI CTYRAG 1 cut(s) 1344
SphI GCATGC 2 cut(s) 450, 1699
SseBI AGGCCT 1 cut(s) 160
SsiI CCGC 4 cut(s) 75, 434, 803, 1580
SspI AATATT 2 cut(s) 544, 1353
SspMI CTAG 5 cut(s) 240, 822, 1338, 1664, 1700
SstI GAGCTC 1 cut(s) 316
StuI AGGCCT 1 cut(s) 160
StyD4I CCNGG 5 cut(s) 86, 351, 976, 1105, 1587
TaaI ACNGT 3 cut(s) 560, 760, 884
TaiI ACGT 1 cut(s) 205
TaqI TCGA 1 cut(s) 1382
TauI GCSGC 2 cut(s) 436, 806
TfiI GAWTC 3 cut(s) 412, 973, 1618
Tru1I TTAA 9 cut(s) 6, 461, 546, 665, 897, 1011, 1101, 1143, 1473
Tru9I TTAA 9 cut(s) 6, 461, 546, 665, 897, 1011, 1101, 1143, 1473
TscAI CASTG 3 cut(s) 862, 1261, 1300
TseFI GTSAC 4 cut(s) 902, 1041, 1252, 1575
TseI GCWGC 5 cut(s) 179, 263, 965, 1450, 1544
Tsp45I GTSAC 4 cut(s) 902, 1041, 1252, 1575
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 3 cut(s) 862, 1261, 1300
Tth111I GACNNNGTC 1 cut(s) 760
Van91I CCANNNNNTGG 1 cut(s) 1256
VpaK11BI GGWCC 4 cut(s) 710, 1247, 1425, 1585
XapI RAATTY 3 cut(s) 682, 931, 1300
XceI RCATGY 4 cut(s) 70, 450, 1009, 1699
XmnI GAANNNNTTC 3 cut(s) 993, 1053, 1270
XspI CTAG 5 cut(s) 240, 822, 1338, 1664, 1700
Zsp2I ATGCAT 1 cut(s) 1697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.