Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001820

Physical Location & Seq

Genomic Coordinates Reverse (-)

26440182 .. 26442157

Gene Structure 1976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0245900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCGCCGTGGATCGCTGCAACTAGCCAACTCGCGAATATGACGCGGCTTTCCTCTCCCAAGTCCGTTACTAACGCTAAAGCCGTTTCCCTCCTCCAACGGCGAGGCCTCGCCGGCGGTGCTGATCATCATGGACCTCCAAAGGTGAACTTTTGGGAGGACCCCTTGAGTCCATCTAAATGGAAAAAAGAACATTTTGTGACCGTCTCCTTAGCGGGATGGGGGTTACTCATCTATGGGGGTTACAAGCTTTTCACTGGCGACAAGGTCAAGAAGGAATCTAAAAAGGAAGAGATCACAGTTCGAGAAGTGCCACGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003676 GO:0003677 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005815 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005873 GO:0005875 GO:0006810 GO:0006890 GO:0006928 GO:0007017 GO:0007018 GO:0007049 GO:0008150 GO:0008283 GO:0009987 GO:0015630 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019882 GO:0019884 GO:0019886 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048002 GO:0048193 GO:0051179 GO:0051234 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

106

Amino Acids

11.73

Weight (kDa)

9.99

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21990
fragaria_vesca	FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800
malus_domestica	MD03G1160600.v1.1
prunus_persica	Prupe.6G148800_v2.0.a1 Prupe.6G148800_v2.0.a1
pyrus_communis	pycom03g11290
rosa_chinensis	RchiOBHm_Chr1g0344561 RchiOBHm_Chr1g0344771 RchiOBHm_Chr1g0344781 RchiOBHm_Chr1g0344791 RchiOBHm_Chr5g0049211
rosa_laevigata	RLG00000028875 RLG00000028876 RLG00000028883 RLG00000028888 RLG00000034600
rosa_multiflora	Rmu_sc0000141.1_g000005 Rmu_sc0001074.1_g000028 Rmu_sc0004949.1_g000001 Rmu_sc0007444.1_g000001 Rmu_sc0013714.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032520 Rroxscaffold_4G00309640
rosa_rugosa	Rorug01G0174800 Rorug05G0245800 Rorug05G0245900
rosa_samantha	Rh1AG191700 Rh1BG157800 Rh1BG157900 Rh1BG158800 Rh1CG176700 Rh1DG189200 Rh1DG189300 Rh1DG189700 Rh5AG323600 Rh5BG334100 Rh5CG359100 Rh5DG346200
rosa_wichuraiana	Rw1G015740 Rw5G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	2 cut(s)	35, 46
AciI	CCGC	3 cut(s)	46, 117, 215
AclWI	GGATC	1 cut(s)	20
AcyI	GRCGYC	1 cut(s)	5
AluBI	AGCT	1 cut(s)	250
AluI	AGCT	1 cut(s)	250
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	20
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	134, 160
AsuHPI	GGTGA	1 cut(s)	157
AvaII	GGWCC	2 cut(s)	134, 160
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	2 cut(s)	181, 213
BceAI	ACGGC	2 cut(s)	68, 116
BclI	TGATCA	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	2 cut(s)	24, 319
BfoI	RGCGCY	1 cut(s)	8
BglI	GCCNNNNNGGC	1 cut(s)	114
BisI	GCNGC	2 cut(s)	18, 47
BlsI	GCNGC	2 cut(s)	19, 48
Bme18I	GGWCC	2 cut(s)	134, 160
BmgT120I	GGNCC	2 cut(s)	134, 160
BmiI	GGNNCC	2 cut(s)	6, 162
Bpu10I	CCTNAGC	1 cut(s)	211
BpuEI	CTTGAG	1 cut(s)	187
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	8
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	1 cut(s)	262
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	1 cut(s)	224
BseNI	ACTGG	1 cut(s)	262
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	4
Bsh1236I	CGCG	2 cut(s)	35, 46
BshFI	GGCC	1 cut(s)	108
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	114
BsmAI	GTCTC	1 cut(s)	211
BsmBI	CGTCTC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	108
Bsp143I	GATC	3 cut(s)	12, 124, 294
Bsp68I	TCGCGA	1 cut(s)	35
BspACI	CCGC	3 cut(s)	46, 117, 215
BspANI	GGCC	1 cut(s)	108
BspFNI	CGCG	2 cut(s)	35, 46
BspLI	GGNNCC	2 cut(s)	6, 162
BspPI	GGATC	1 cut(s)	20
BspT107I	GGYRCC	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	262
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	3 cut(s)	12, 124, 294
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	2 cut(s)	205, 301
Bst6I	CTCTTC	1 cut(s)	285
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	1 cut(s)	211
BstDSI	CCRYGG	1 cut(s)	8
BstF5I	GGATG	1 cut(s)	224
BstFNI	CGCG	2 cut(s)	35, 46
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	15, 127, 297
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	3 cut(s)	12, 124, 294
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 119
BstUI	CGCG	2 cut(s)	35, 46
BstV1I	GCAGC	1 cut(s)	4
BstXI	CCANNNNNNTGG	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	108
BtgI	CCRYGG	1 cut(s)	8
BtsCI	GGATG	1 cut(s)	224
BtsIMutI	CAGTG	1 cut(s)	255
BtuMI	TCGCGA	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	115
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	2 cut(s)	134, 160
CseI	GACGC	1 cut(s)	52
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	5 cut(s)	27, 49, 83, 108, 250
CviKI_1	RGCY	5 cut(s)	27, 49, 83, 108, 250
DdeI	CTNAG	1 cut(s)	211
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	3 cut(s)	14, 126, 296
DpnII	GATC	3 cut(s)	12, 124, 294
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco147I	AGGCCT	1 cut(s)	108
Eco47I	GGWCC	2 cut(s)	134, 160
EcoO109I	RGGNCCY	1 cut(s)	160
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	1 cut(s)	134
FaiI	YATR	3 cut(s)	41, 132, 237
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FatI	CATG	1 cut(s)	130
FauI	CCCGC	1 cut(s)	208
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	2 cut(s)	18, 47
FokI	GGATG	1 cut(s)	231
Fsp4HI	GCNGC	2 cut(s)	18, 47
FspBI	CTAG	2 cut(s)	24, 319
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	18, 47
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	1 cut(s)	114
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	134
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	2 cut(s)	169, 278
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188III	TCNNGA	3 cut(s)	34, 271, 305
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	2 cut(s)	205, 301
HpyCH4V	TGCA	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 119
HpyF3I	CTNAG	1 cut(s)	211
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	134
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	12, 124, 294
LpnPI	CCDG	2 cut(s)	127, 243
Lsp1109I	GCAGC	1 cut(s)	4
MaeI	CTAG	2 cut(s)	24, 319
MaeIII	GTNAC	4 cut(s)	67, 199, 225, 242
MalI	GATC	3 cut(s)	14, 126, 296
MboI	GATC	3 cut(s)	12, 124, 294
MboII	GAAGA	1 cut(s)	302
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	178
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	7 cut(s)	64, 98, 101, 104, 119, 147, 151
MreI	CGCCGGCG	1 cut(s)	113
MroNI	GCCGGC	1 cut(s)	113
MslI	CAYNNNNRTG	1 cut(s)	178
MspI	CCGG	1 cut(s)	114
MvnI	CGCG	2 cut(s)	35, 46
MwoI	GCNNNNNNNGC	2 cut(s)	114, 119
NaeI	GCCGGC	1 cut(s)	115
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	3 cut(s)	12, 124, 294
NgoMIV	GCCGGC	1 cut(s)	113
NlaIII	CATG	1 cut(s)	134
NlaIV	GGNNCC	2 cut(s)	6, 162
NmuCI	GTSAC	1 cut(s)	199
NruI	TCGCGA	1 cut(s)	35
PceI	AGGCCT	1 cut(s)	108
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PdiI	GCCGGC	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	278
PflFI	GACNNNGTC	1 cut(s)	266
PkrI	GCNGC	2 cut(s)	19, 48
PleI	GAGTC	1 cut(s)	177
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	177
PpuMI	RGGWCCY	1 cut(s)	160
Psp5II	RGGWCCY	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	6, 162
PspPI	GGNCC	2 cut(s)	134, 160
PspPPI	RGGWCCY	1 cut(s)	160
PsyI	GACNNNGTC	1 cut(s)	266
RruI	TCGCGA	1 cut(s)	35
RseI	CAYNNNNRTG	1 cut(s)	178
SatI	GCNGC	2 cut(s)	18, 47
Sau3AI	GATC	3 cut(s)	12, 124, 294
Sau96I	GGNCC	2 cut(s)	134, 160
SchI	GAGTC	1 cut(s)	178
SetI	ASST	4 cut(s)	139, 147, 252, 270
SfoI	GGCGCC	1 cut(s)	6
SgrAI	CRCCGGYG	1 cut(s)	113
SinI	GGWCC	2 cut(s)	134, 160
SmiMI	CAYNNNNRTG	1 cut(s)	178
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
SseBI	AGGCCT	1 cut(s)	108
SsiI	CCGC	3 cut(s)	46, 117, 215
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	24, 319
StuI	AGGCCT	1 cut(s)	108
TaaI	ACNGT	2 cut(s)	205, 301
TaqI	TCGA	1 cut(s)	304
TauI	GCSGC	1 cut(s)	49
TfiI	GAWTC	1 cut(s)	278
TscAI	CASTG	1 cut(s)	262
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	199
TspGWI	ACGGA	1 cut(s)	55
TspRI	CASTG	1 cut(s)	262
Tth111I	GACNNNGTC	1 cut(s)	266
VpaK11BI	GGWCC	2 cut(s)	134, 160
XspI	CTAG	2 cut(s)	24, 319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.