Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001820

Physical Location & Seq

Genomic Coordinates Forward (+)

29696885 .. 29697957

Gene Structure 1073 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028883

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGCAGAAGTACGTACTTGCAAAGACAAATTTGAATGGCCATCCATCCTCTAAAGGAAGATCACTACTGATGGCATGCTCACTCAATTTAATGTCATGTTTCTTGAAAACAAGGCAGTATGATGAATGTATAAAAGAAGGTTCTGAGGTACTGACATGTGATGCACAGAATGTGAAAGCTCTCTATCGGAGAGGTCAAGCATATAAAGAATTTGGTCAATTGGAAGATGCTGTCTCTGACCTGAGCATGGCACATGAAGTGTCCCCTGATGATGAAACTATTGCGGATGTTCTAAGGGAAGCTAAGGAAAATTCGGAAACCAGAGACATTCCCAAGACTCAAATTGCAGCCGACTCTGAGGTTCTGTCAAACAATTCAGAGCGTTTGCAGGCTTTAAAAAATGACCCAGCTACTCTCAGAGATTCATCTCCAACACTAGCATCATTCACTGCTTACAGACAAGGTTCATCAAAGTATTGCCGTGAAATCTCTTTTGTAAATGTGGCACATGATGAAGGTGAAAGTAGTTCTCATGGAATATTAACAAATATGAGAAGTACTCCTCAGTCGAGCTTCCCTGCTGCCTCTGCTGTTGATTTCCAAGAACAAATGAGAAACCAAATGAAAGATCCTGCAATGCGGAAGATGTTATCATCAATGATGAAGAATATGAGTCCAAACATATTGGCAAACCTGAGTGAGCAATGTGGTTTGAATCTTTCCCGGGAAGATGCGGAAAAAGCTCATCAAGCAATGTCTTCATTTTCACCAGAGTCCTTAGACAAAATGATGCAATGGATGGATAGGATTCAAAAAGGAGTGGAACGTGCAAGGAAGACAAAGAATTGGCTGCTGGGGAAATCCGGTTTGATTTTGGCAGTAGTAATTATCATTCTTGCTGTAATCCTTCATTGGTTGGGATACATTAGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006810 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0012505 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0046967 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098588 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2

Protein Analysis

312

Amino Acids

34.66

Weight (kDa)

6.61

Isoelectric Point (pI)

51.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21990
fragaria_vesca	FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800
malus_domestica	MD03G1160600.v1.1
prunus_persica	Prupe.6G148800_v2.0.a1 Prupe.6G148800_v2.0.a1
pyrus_communis	pycom03g11290
rosa_chinensis	RchiOBHm_Chr1g0344561 RchiOBHm_Chr1g0344771 RchiOBHm_Chr1g0344781 RchiOBHm_Chr1g0344791 RchiOBHm_Chr5g0049211
rosa_laevigata	RLG00000028875 RLG00000028876 RLG00000028883 RLG00000028888 RLG00000034600
rosa_multiflora	Rmu_sc0000141.1_g000005 Rmu_sc0001074.1_g000028 Rmu_sc0004949.1_g000001 Rmu_sc0007444.1_g000001 Rmu_sc0013714.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032520 Rroxscaffold_4G00309640
rosa_rugosa	Rorug01G0174800 Rorug05G0245800 Rorug05G0245900
rosa_samantha	Rh1AG191700 Rh1BG157800 Rh1BG157900 Rh1BG158800 Rh1CG176700 Rh1DG189200 Rh1DG189300 Rh1DG189700 Rh5AG323600 Rh5BG334100 Rh5CG359100 Rh5DG346200
rosa_wichuraiana	Rw1G015740 Rw5G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	284, 640, 734
AclWI	GGATC	1 cut(s)	623
AcoI	YGGCCR	1 cut(s)	37
AcsI	RAATTY	3 cut(s)	28, 209, 310
AfaI	GTAC	4 cut(s)	11, 15, 150, 559
AfiI	CCNNNNNNNGG	1 cut(s)	247
AflIII	ACRYGT	1 cut(s)	155
AgsI	TTSAA	4 cut(s)	34, 106, 715, 812
AluBI	AGCT	5 cut(s)	179, 302, 410, 573, 743
AluI	AGCT	5 cut(s)	179, 302, 410, 573, 743
Alw26I	GTCTC	2 cut(s)	238, 318
AlwI	GGATC	1 cut(s)	623
Ama87I	CYCGRG	1 cut(s)	723
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	3 cut(s)	347, 581, 850
ApoI	RAATTY	3 cut(s)	28, 209, 310
AsuC2I	CCSGG	2 cut(s)	724, 725
AsuHPI	GGTGA	2 cut(s)	530, 759
AvaI	CYCGRG	1 cut(s)	723
BaeI	ACNNNNGTAYC	1 cut(s)	913
BalI	TGGCCA	1 cut(s)	39
BbsI	GAAGAC	2 cut(s)	750, 842
BbvI	GCAGC	3 cut(s)	359, 568, 837
BccI	CCATC	4 cut(s)	48, 52, 64, 793
BceAI	ACGGC	1 cut(s)	465
BciVI	GTATCC	1 cut(s)	914
BcnI	CCSGG	2 cut(s)	724, 725
BcoDI	GTCTC	2 cut(s)	238, 318
BfaI	CTAG	1 cut(s)	437
BfuI	GTATCC	1 cut(s)	914
BisI	GCNGC	3 cut(s)	348, 582, 851
BlsI	GCNGC	3 cut(s)	349, 583, 852
BmcAI	AGTACT	1 cut(s)	559
Bme1390I	CCNGG	2 cut(s)	724, 725
BmeT110I	CYCGRG	1 cut(s)	723
BmrFI	CCNGG	2 cut(s)	724, 725
BmsI	GCATC	5 cut(s)	151, 217, 449, 721, 780
BpiI	GAAGAC	2 cut(s)	750, 842
BplI	GAGNNNNNCTC	2 cut(s)	544, 576
Bpu10I	CCTNAGC	2 cut(s)	242, 303
BpuMI	CCSGG	2 cut(s)	724, 725
BsaAI	YACGTR	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	723
BsaWI	WCCGGW	1 cut(s)	863
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse3DI	GCAATG	4 cut(s)	642, 710, 759, 800
BseDI	CCNNGG	1 cut(s)	723
BseGI	GGATG	4 cut(s)	40, 44, 292, 804
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMI	GCAATG	4 cut(s)	642, 710, 759, 800
BseMII	CTCAG	6 cut(s)	135, 233, 348, 430, 578, 686
BseRI	GAGGAG	1 cut(s)	552
BseXI	GCAGC	3 cut(s)	359, 568, 837
BseYI	CCCAGC	2 cut(s)	406, 853
BshFI	GGCC	1 cut(s)	39
BsiHKCI	CYCGRG	1 cut(s)	723
BsiSI	CCGG	2 cut(s)	724, 864
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmAI	GTCTC	2 cut(s)	238, 318
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	39
BsoBI	CYCGRG	1 cut(s)	723
Bsp143I	GATC	2 cut(s)	59, 628
BspACI	CCGC	3 cut(s)	284, 640, 734
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	6 cut(s)	136, 234, 349, 429, 577, 687
BspPI	GGATC	1 cut(s)	623
BsrDI	GCAATG	4 cut(s)	642, 710, 759, 800
BssECI	CCNNGG	1 cut(s)	723
BssMI	GATC	2 cut(s)	59, 628
BstBAI	YACGTR	1 cut(s)	13
BstC8I	GCNNGC	2 cut(s)	76, 390
BstDEI	CTNAG	9 cut(s)	144, 242, 293, 303, 357, 416, 564, 695, 778
BstF5I	GGATG	4 cut(s)	40, 44, 292, 804
BstKTI	GATC	2 cut(s)	62, 631
BstMAI	GTCTC	2 cut(s)	238, 318
BstMBI	GATC	2 cut(s)	59, 628
BstMWI	GCNNNNNNNGC	3 cut(s)	587, 740, 749
BstNSI	RCATGY	2 cut(s)	78, 159
BstSCI	CCNGG	2 cut(s)	722, 723
BstSNI	TACGTA	1 cut(s)	13
BstV1I	GCAGC	3 cut(s)	359, 568, 837
BstV2I	GAAGAC	2 cut(s)	750, 842
BstX2I	RGATCY	1 cut(s)	628
BstYI	RGATCY	1 cut(s)	628
BsuI	GTATCC	1 cut(s)	914
BsuRI	GGCC	1 cut(s)	39
BtsCI	GGATG	4 cut(s)	40, 44, 292, 804
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	1 cut(s)	447
Cac8I	GCNNGC	2 cut(s)	76, 390
Cfr9I	CCCGGG	1 cut(s)	723
Csp6I	GTAC	4 cut(s)	10, 14, 149, 558
CviAII	CATG	7 cut(s)	75, 96, 156, 247, 254, 509, 533
CviJI	RGCY	9 cut(s)	39, 179, 302, 350, 392, 410, 573, 743, 850
CviKI_1	RGCY	9 cut(s)	39, 179, 302, 350, 392, 410, 573, 743, 850
CviQI	GTAC	4 cut(s)	10, 14, 149, 558
DdeI	CTNAG	9 cut(s)	144, 242, 293, 303, 357, 416, 564, 695, 778
DpnI	GATC	2 cut(s)	61, 630
DpnII	GATC	2 cut(s)	59, 628
DraI	TTTAAA	1 cut(s)	396
EaeI	YGGCCR	1 cut(s)	37
Eco105I	TACGTA	1 cut(s)	13
Eco88I	CYCGRG	1 cut(s)	723
FaeI	CATG	7 cut(s)	78, 99, 159, 250, 257, 512, 536
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	7 cut(s)	74, 95, 155, 246, 253, 508, 532
Fnu4HI	GCNGC	3 cut(s)	348, 582, 851
FokI	GGATG	4 cut(s)	27, 31, 299, 811
Fsp4HI	GCNGC	3 cut(s)	348, 582, 851
FspBI	CTAG	1 cut(s)	437
GluI	GCNGC	3 cut(s)	348, 582, 851
GsaI	CCCAGC	2 cut(s)	410, 857
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	2 cut(s)	724, 864
Hin1II	CATG	7 cut(s)	78, 99, 159, 250, 257, 512, 536
HinfI	GANTC	7 cut(s)	337, 353, 422, 673, 715, 773, 808
HpaII	CCGG	2 cut(s)	724, 864
HphI	GGTGA	2 cut(s)	530, 759
Hpy188I	TCNGA	7 cut(s)	145, 189, 238, 316, 358, 379, 419
Hpy188III	TCNNGA	1 cut(s)	103
HpyAV	CCTTC	3 cut(s)	131, 509, 917
HpyCH4IV	ACGT	2 cut(s)	12, 826
HpyCH4V	TGCA	8 cut(s)	4, 20, 164, 347, 388, 635, 793, 830
HpyF10VI	GCNNNNNNNGC	3 cut(s)	587, 740, 749
HpyF3I	CTNAG	9 cut(s)	144, 242, 293, 303, 357, 416, 564, 695, 778
HpySE526I	ACGT	2 cut(s)	12, 826
Hsp92II	CATG	7 cut(s)	78, 99, 159, 250, 257, 512, 536
Kzo9I	GATC	2 cut(s)	59, 628
Lsp1109I	GCAGC	3 cut(s)	359, 568, 837
LweI	GCATC	5 cut(s)	151, 217, 449, 721, 780
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	2 cut(s)	12, 826
MalI	GATC	2 cut(s)	61, 630
MboI	GATC	2 cut(s)	59, 628
MboII	GAAGA	7 cut(s)	69, 236, 655, 676, 740, 750, 847
MfeI	CAATTG	1 cut(s)	218
MflI	RGATCY	1 cut(s)	628
MlsI	TGGCCA	1 cut(s)	39
MluCI	AATT	9 cut(s)	28, 85, 209, 218, 310, 342, 373, 844, 885
MluNI	TGGCCA	1 cut(s)	39
MlyI	GAGTC	4 cut(s)	331, 347, 682, 782
MmeI	TCCRAC	1 cut(s)	455
MnlI	CCTC	6 cut(s)	58, 139, 185, 352, 573, 595
Mox20I	TGGCCA	1 cut(s)	39
MscI	TGGCCA	1 cut(s)	39
MseI	TTAA	3 cut(s)	89, 395, 542
Msp20I	TGGCCA	1 cut(s)	39
MspI	CCGG	2 cut(s)	724, 864
MspR9I	CCNGG	2 cut(s)	724, 725
MunI	CAATTG	1 cut(s)	218
MwoI	GCNNNNNNNGC	3 cut(s)	587, 740, 749
NciI	CCSGG	2 cut(s)	724, 725
NdeII	GATC	2 cut(s)	59, 628
NlaIII	CATG	7 cut(s)	78, 99, 159, 250, 257, 512, 536
NspI	RCATGY	2 cut(s)	78, 159
PaeI	GCATGC	1 cut(s)	78
PciI	ACATGT	1 cut(s)	155
PfeI	GAWTC	3 cut(s)	422, 715, 808
PkrI	GCNGC	3 cut(s)	349, 583, 852
PleI	GAGTC	4 cut(s)	331, 347, 681, 781
PpsI	GAGTC	4 cut(s)	331, 347, 681, 781
Ppu21I	YACGTR	1 cut(s)	13
PscI	ACATGT	1 cut(s)	155
PspFI	CCCAGC	2 cut(s)	406, 853
PsuI	RGATCY	1 cut(s)	628
RsaI	GTAC	4 cut(s)	11, 15, 150, 559
RsaNI	GTAC	4 cut(s)	10, 14, 149, 558
SaqAI	TTAA	3 cut(s)	89, 395, 542
SatI	GCNGC	3 cut(s)	348, 582, 851
Sau3AI	GATC	2 cut(s)	59, 628
ScaI	AGTACT	1 cut(s)	559
SchI	GAGTC	4 cut(s)	331, 347, 682, 782
ScrFI	CCNGG	2 cut(s)	724, 725
SfaNI	GCATC	5 cut(s)	151, 217, 449, 721, 780
SmaI	CCCGGG	1 cut(s)	725
SnaBI	TACGTA	1 cut(s)	13
SphI	GCATGC	1 cut(s)	78
Sse9I	AATT	9 cut(s)	28, 85, 209, 218, 310, 342, 373, 844, 885
SsiI	CCGC	3 cut(s)	284, 640, 734
SspI	AATATT	1 cut(s)	540
SspMI	CTAG	1 cut(s)	437
StyD4I	CCNGG	2 cut(s)	722, 723
TaiI	ACGT	2 cut(s)	15, 829
TaqI	TCGA	1 cut(s)	569
TasI	AATT	9 cut(s)	28, 85, 209, 218, 310, 342, 373, 844, 885
TatI	WGTACW	1 cut(s)	557
TfiI	GAWTC	3 cut(s)	422, 715, 808
Tru1I	TTAA	3 cut(s)	89, 395, 542
Tru9I	TTAA	3 cut(s)	89, 395, 542
TscAI	CASTG	1 cut(s)	454
TseI	GCWGC	3 cut(s)	347, 581, 850
TspMI	CCCGGG	1 cut(s)	723
TspRI	CASTG	1 cut(s)	454
XapI	RAATTY	3 cut(s)	28, 209, 310
XceI	RCATGY	2 cut(s)	78, 159
XmaI	CCCGGG	1 cut(s)	723
XspI	CTAG	1 cut(s)	437
ZrmI	AGTACT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.